LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
CLASV/__init__.py
CLASV/cli.py
CLASV/core.py
CLASV/install_nextclade.py
CLASV/pipeline.py
CLASV/predict_lineage.smk
CLASV/requirements.txt
CLASV.egg-info/PKG-INFO
CLASV.egg-info/SOURCES.txt
CLASV.egg-info/dependency_links.txt
CLASV.egg-info/entry_points.txt
CLASV.egg-info/requires.txt
CLASV.egg-info/top_level.txt
CLASV/__pycache__/__init__.cpython-311.pyc
CLASV/__pycache__/install_nextclade.cpython-311.pyc
CLASV/config/NC_004296.fasta
CLASV/config/RF_LASV_lineage_n1000_aa.joblib
CLASV/config/configs.yaml
CLASV/raw_data/Adesina_et_al_2023_EMI.csv
CLASV/raw_data/Adesina_et_al_2023_EMI.fasta
CLASV/raw_data/All_LASV_06_07_24.csv
CLASV/raw_data/All_LASV_06_07_24.fasta
CLASV/raw_data/Bangura_et_al_2024_EMI.csv
CLASV/raw_data/Bangura_et_al_2024_EMI.fasta