MANIFEST.in
README.md
setup.py
CIRI_long/__init__.py
CIRI_long/align.py
CIRI_long/collapse.py
CIRI_long/env.py
CIRI_long/find_bsj.py
CIRI_long/find_ccs.py
CIRI_long/logger.py
CIRI_long/main.py
CIRI_long/pipeline.py
CIRI_long/utils.py
CIRI_long/version.py
CIRI_long.egg-info/PKG-INFO
CIRI_long.egg-info/SOURCES.txt
CIRI_long.egg-info/dependency_links.txt
CIRI_long.egg-info/entry_points.txt
CIRI_long.egg-info/not-zip-safe
CIRI_long.egg-info/requires.txt
CIRI_long.egg-info/top_level.txt
libs/__init__.py
libs/ccs
libs/striped_smith_waterman/__init__.py
libs/striped_smith_waterman/libssw.so
libs/striped_smith_waterman/pyssw.py
libs/striped_smith_waterman/ssw_wrap.py