Metadata-Version: 1.0
Name: cimcb-lite
Version: 0.0.17
Summary: This is a pre-release.
Home-page: https://github.com/KevinMMendez/cimcb_lite
Author: UNKNOWN
Author-email: UNKNOWN
License: http://www.apache.org/licenses/LICENSE-2.0.html
Description: ![image](cimcb_logo.jpg)
        ### cimcb lite 
        cimcb_lite is a lite version of the cimcb package containing the necessary tools for the statistical analysis of untargeted and targeted metabolomics data **(currently for binary classification)**. 
        
        ## Installation
        
        ### Dependencies
        cimcb_lite requires:
        - Python(>=3.5)
        - Bokeh(>=1.0.0)
        - NumPy
        - SciPy
        - scikit-learn
        - Statsmodels
        - tqdm
        
        ### User installation
        The recommend way to install cimcb_lite and dependencies is to using ``conda``:
        ```console
        conda install -c cimcb cimcb_lite
        ```
        or ``pip``:
        ```console
        pip install cimcb_lite
        ```
        Alternatively, to install directly from github:
        ```console
        pip install https://github.com/KevinMMendez/cimcb_lite/archive/master.zip
        ```
        
        ### Quick Start
        
        
        ### Tutorial
        Open with Binders:  
        
        [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/KevinMMendez/BinderTutorial_Workflow/master?filepath=BinderTutorial_Workflow.ipynb)
        
        ### API
        For futher detail on the usage refer to the docstring.
        
        #### cimcb_lite.model
        - [PLS_SIMPLS](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/model/PLS_SIMPLS.py)
        
        #### cimcb_lite.plot
        - [boxplot](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/boxplot.py)
        - [distribution](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/distribution.py)
        - [pca](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/pca.py)
        - [permutation_test](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/permutation_test.py)
        - [roc](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/roc.py)
        - [scatter](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/scattern.py)
        - [scatterCI](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/plot/scatterCI.py)
        
        #### cimcb_lite.cross_val
        - [kfold](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/cross_val/kfold.py)
        
        #### cimcb_lite.bootstrap
        - [Perc](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/bootstrap/Perc.py)
        - [BC](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/bootstrap/BC.py)
        - [BCA](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/bootstrap/BCA.py)
        
        #### cimcb_lite.utils
        - [binary_metrics](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/binary_metrics.py)
        - [ci95_ellipse](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/ci95_ellipse.py)
        - [binary_metrics](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/binary_metrics.py)
        - [knnimpute](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/knnimpute.py)
        - [load_dataXL](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/load_dataXL.py)
        - [nested_getattr](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/nested_getattr.py)
        - [scale](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/scale.py)
        - [table_check](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/table_check.py)
        - [univariate_2class](https://github.com/KevinMMendez/cimcb_lite/blob/master/cimcb_lite/utils/univariate_2class.py)
        
        ### License
        cimcb_lite is licensed under the ___ license. 
        
        ### Authors
        - Kevin Mendez
        - [David Broadhurst](https://scholar.google.ca/citations?user=M3_zZwUAAAAJ&hl=en)
        
        ### Correspondence
        Professor David Broadhurst, Director of the Centre for Integrative Metabolomics & Computation Biology at Edith Cowan University.  
        E-mail: d.broadhurst@ecu.edu.au
        
        ### Citation
        If you would cite cimcb_lite in a scientific publication, you can use the following: ___
        
Platform: UNKNOWN
