LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
CIAlign/CIAlign
CIAlign/CIAlign.py
CIAlign/__init__.py
CIAlign/_version.py
CIAlign/argP.py
CIAlign/consensusSeq.py
CIAlign/cropSeq.py
CIAlign/miniAlignments.py
CIAlign/palettes.py
CIAlign/parsingFunctions.py
CIAlign/ranges.txt
CIAlign/runCIAlign.py
CIAlign/similarityMatrix.py
CIAlign/utilityFunctions.py
cialign.egg-info/PKG-INFO
cialign.egg-info/SOURCES.txt
cialign.egg-info/dependency_links.txt
cialign.egg-info/requires.txt
cialign.egg-info/requires.txt~
cialign.egg-info/top_level.txt
tests/__init__.py
tests/consensusSeqTest.py
tests/cropSeqTest.py
tests/helperFunctions.py
tests/miniAlignmentsTest.py
tests/parsingFunctionsTest.py
tests/similarityMatrixTest.py
tests/utilityFunctionsTest.py