README.md
setup.py
CIAlign/CIAlign
CIAlign/CIAlign.py
CIAlign/__init__.py
CIAlign/consensusSeq.py
CIAlign/cropSeq.py
CIAlign/miniAlignments.py
CIAlign/parsingFunctions.py
CIAlign/similarityMatrix.py
CIAlign/utilityFunctions.py
cialign.egg-info/PKG-INFO
cialign.egg-info/SOURCES.txt
cialign.egg-info/dependency_links.txt
cialign.egg-info/requires.txt
cialign.egg-info/top_level.txt