LICENSE
README.md
pyproject.toml
src/chimera_metagenome_generator.egg-info/PKG-INFO
src/chimera_metagenome_generator.egg-info/SOURCES.txt
src/chimera_metagenome_generator.egg-info/dependency_links.txt
src/chimera_metagenome_generator.egg-info/entry_points.txt
src/chimera_metagenome_generator.egg-info/requires.txt
src/chimera_metagenome_generator.egg-info/top_level.txt
src/metagenome_generator/__init__.py
src/metagenome_generator/__main__.py
src/metagenome_generator/accession_snapshot.py
src/metagenome_generator/benchmark_recipe.py
src/metagenome_generator/blastn_filter.py
src/metagenome_generator/chunk_genomes.py
src/metagenome_generator/cli.py
src/metagenome_generator/download_genomes.py
src/metagenome_generator/genome_layout.py
src/metagenome_generator/ncbi_search.py
src/metagenome_generator/similarity_filter.py
src/metagenome_generator/temporal_split.py
src/metagenome_generator/viral_taxonomy.py
tests/test_benchmark_recipe_diversity.py
tests/test_cli_flag_coverage.py
tests/test_cli_validation.py
tests/test_download_cache.py
tests/test_viral_db_manifest.py