AUTHORS.rst
CONTRIBUTING.rst
LICENSE
MANIFEST.in
README.rst
setup.py
chemicalchecker/__init__.py
chemicalchecker.egg-info/PKG-INFO
chemicalchecker.egg-info/SOURCES.txt
chemicalchecker.egg-info/dependency_links.txt
chemicalchecker.egg-info/not-zip-safe
chemicalchecker.egg-info/requires.txt
chemicalchecker.egg-info/top_level.txt
chemicalchecker/core/__init__.py
chemicalchecker/core/chemcheck.py
chemicalchecker/core/clus.py
chemicalchecker/core/data.py
chemicalchecker/core/diagnostics.py
chemicalchecker/core/examples.py
chemicalchecker/core/molkit.py
chemicalchecker/core/neig.py
chemicalchecker/core/preprocess.py
chemicalchecker/core/proj.py
chemicalchecker/core/sign0.py
chemicalchecker/core/sign1.py
chemicalchecker/core/sign2.py
chemicalchecker/core/sign3.py
chemicalchecker/core/sign4.py
chemicalchecker/core/signature_base.py
chemicalchecker/core/signature_data.py
chemicalchecker/core/validation.py
chemicalchecker/core/examples/ctrp_auc.csv
chemicalchecker/core/examples/fps.pkl
chemicalchecker/core/examples/pharmacodb_targets.tsv
chemicalchecker/core/examples/toy_matrix.pkl
chemicalchecker/core/examples/toy_pairs.pkl
chemicalchecker/core/examples/validation_sets/atc_validation.tsv
chemicalchecker/core/examples/validation_sets/moa_validation.tsv
chemicalchecker/core/projector/__init__.py
chemicalchecker/core/projector/default.py
chemicalchecker/core/projector/pca.py
chemicalchecker/core/projector/tsne.py
chemicalchecker/core/projector/umap_.py
chemicalchecker/database/__init__.py
chemicalchecker/database/calcdata.py
chemicalchecker/database/database.py
chemicalchecker/database/dataset.py
chemicalchecker/database/datasource.py
chemicalchecker/database/molecule.py
chemicalchecker/database/molrepo.py
chemicalchecker/database/pubchem.py
chemicalchecker/database/uniprotkb.py
chemicalchecker/tool/__init__.py
chemicalchecker/tool/adanet/__init__.py
chemicalchecker/tool/adanet/adanet_wrap.py
chemicalchecker/tool/adanet/cnn_generator.py
chemicalchecker/tool/adanet/dnn_extend_generator.py
chemicalchecker/tool/adanet/dnn_stack_generator.py
chemicalchecker/tool/autoencoder/__init__.py
chemicalchecker/tool/autoencoder/autoencoder.py
chemicalchecker/tool/autoencoder/autoencoder_siamese.py
chemicalchecker/tool/classifier/__init__.py
chemicalchecker/tool/classifier/imbalanced/__init__.py
chemicalchecker/tool/classifier/imbalanced/imbalanced.py
chemicalchecker/tool/classifier/multitask/__init__.py
chemicalchecker/tool/classifier/multitask/binarymultitask.py
chemicalchecker/tool/deepchem/__init__.py
chemicalchecker/tool/deepchem/feat/__init__.py
chemicalchecker/tool/deepchem/feat/base_classes.py
chemicalchecker/tool/deepchem/feat/graph_features.py
chemicalchecker/tool/deepchem/feat/mol_graphs.py
chemicalchecker/tool/graphconv/__init__.py
chemicalchecker/tool/graphconv/graph_smiles_sign.py
chemicalchecker/tool/hotnet/__init__.py
chemicalchecker/tool/hotnet/hotnet.py
chemicalchecker/tool/node2vec/__init__.py
chemicalchecker/tool/node2vec/node2vec.py
chemicalchecker/tool/node2vec/word2vec.py
chemicalchecker/tool/siamese/__init__.py
chemicalchecker/tool/siamese/callbacks.py
chemicalchecker/tool/siamese/siamese.py
chemicalchecker/tool/siamese/siamese_triplets.py
chemicalchecker/tool/smilespred/__init__.py
chemicalchecker/tool/smilespred/apppred.py
chemicalchecker/tool/smilespred/smilespred.py
chemicalchecker/tool/targetmate/__init__.py
chemicalchecker/tool/targetmate/base.py
chemicalchecker/tool/targetmate/io.py
chemicalchecker/tool/targetmate/ml.py
chemicalchecker/tool/targetmate/multi.py
chemicalchecker/tool/targetmate/run.py
chemicalchecker/tool/targetmate/signaturizer.py
chemicalchecker/tool/targetmate/tmsetup.py
chemicalchecker/tool/targetmate/datasets/__init__.py
chemicalchecker/tool/targetmate/datasets/chembl/__init__.py
chemicalchecker/tool/targetmate/datasets/chembl/fetch_chembl.py
chemicalchecker/tool/targetmate/datasets/drugbank/__init__.py
chemicalchecker/tool/targetmate/datasets/drugbank/fetch_drugbank.py
chemicalchecker/tool/targetmate/datasets/moleculenet/__init__.py
chemicalchecker/tool/targetmate/datasets/moleculenet/fetch_moleculenet.py
chemicalchecker/tool/targetmate/evaluation/__init__.py
chemicalchecker/tool/targetmate/evaluation/prediction.py
chemicalchecker/tool/targetmate/evaluation/score.py
chemicalchecker/tool/targetmate/evaluation/validation.py
chemicalchecker/tool/targetmate/examples/__init__.py
chemicalchecker/tool/targetmate/examples/example.py
chemicalchecker/tool/targetmate/models/__init__.py
chemicalchecker/tool/targetmate/models/autosklearnconfigs.py
chemicalchecker/tool/targetmate/models/gridconfigs.py
chemicalchecker/tool/targetmate/models/hyperoptconfigs.py
chemicalchecker/tool/targetmate/models/tpotconfigs.py
chemicalchecker/tool/targetmate/models/vanillaconfigs.py
chemicalchecker/tool/targetmate/nonconformist/__init__.py
chemicalchecker/tool/targetmate/nonconformist/acp.py
chemicalchecker/tool/targetmate/nonconformist/base.py
chemicalchecker/tool/targetmate/nonconformist/cp.py
chemicalchecker/tool/targetmate/nonconformist/evaluation.py
chemicalchecker/tool/targetmate/nonconformist/icp.py
chemicalchecker/tool/targetmate/nonconformist/nc.py
chemicalchecker/tool/targetmate/nonconformist/util.py
chemicalchecker/tool/targetmate/universes/__init__.py
chemicalchecker/tool/targetmate/universes/univs.py
chemicalchecker/tool/targetmate/utils/__init__.py
chemicalchecker/tool/targetmate/utils/chemistry.py
chemicalchecker/tool/targetmate/utils/conformal.py
chemicalchecker/tool/targetmate/utils/hpc.py
chemicalchecker/tool/targetmate/utils/log.py
chemicalchecker/tool/targetmate/utils/metrics.py
chemicalchecker/tool/targetmate/utils/pairs.py
chemicalchecker/tool/targetmate/utils/plots.py
chemicalchecker/tool/targetmate/utils/reportcard.py
chemicalchecker/tool/targetmate/utils/splitters.py
chemicalchecker/tool/targetmate/utils/tasks.py
chemicalchecker/tool/targetmate/utils/topped.py
chemicalchecker/util/__init__.py
chemicalchecker/util/aggregate/__init__.py
chemicalchecker/util/aggregate/aggregate.py
chemicalchecker/util/config/__init__.py
chemicalchecker/util/config/cc_config.json
chemicalchecker/util/config/config.py
chemicalchecker/util/decomposition/__init__.py
chemicalchecker/util/decomposition/correlation.py
chemicalchecker/util/decorator/__init__.py
chemicalchecker/util/decorator/profilehooks.py
chemicalchecker/util/decorator/property.py
chemicalchecker/util/decorator/safe.py
chemicalchecker/util/decorator/timeout.py
chemicalchecker/util/download/__init__.py
chemicalchecker/util/download/download.py
chemicalchecker/util/hpc/__init__.py
chemicalchecker/util/hpc/hpc.py
chemicalchecker/util/hpc/local.py
chemicalchecker/util/hpc/sge.py
chemicalchecker/util/hpc/slurm.py
chemicalchecker/util/hpc/test_script.py
chemicalchecker/util/keytype/__init__.py
chemicalchecker/util/keytype/detect.py
chemicalchecker/util/logging/__init__.py
chemicalchecker/util/logging/logging_conf.ini
chemicalchecker/util/logging/our_logging.py
chemicalchecker/util/mol2svg/__init__.py
chemicalchecker/util/mol2svg/mol2svg.py
chemicalchecker/util/network/__init__.py
chemicalchecker/util/network/network.py
chemicalchecker/util/parser/__init__.py
chemicalchecker/util/parser/converter.py
chemicalchecker/util/parser/data_calculator.py
chemicalchecker/util/parser/parser.py
chemicalchecker/util/performance/__init__.py
chemicalchecker/util/performance/linkprediction.py
chemicalchecker/util/performance/performance.py
chemicalchecker/util/pipeline/__init__.py
chemicalchecker/util/pipeline/pipeline.py
chemicalchecker/util/pipeline/task_base.py
chemicalchecker/util/pipeline/tasks/__init__.py
chemicalchecker/util/pipeline/tasks/python_callable_task.py
chemicalchecker/util/pipeline/tasks/task_cc_fit.py
chemicalchecker/util/pipeline/tasks/task_cc_predict.py
chemicalchecker/util/pipeline/tasks_web/__init__.py
chemicalchecker/util/pipeline/tasks_web/task_web_coordinates.py
chemicalchecker/util/pipeline/tasks_web/task_web_libraries.py
chemicalchecker/util/pipeline/tasks_web/task_web_molinfo.py
chemicalchecker/util/pipeline/tasks_web/task_web_plots.py
chemicalchecker/util/pipeline/tasks_web/task_web_projections.py
chemicalchecker/util/pipeline/tasks_web/task_web_pubchem.py
chemicalchecker/util/pipeline/tasks_web/task_web_showtargets.py
chemicalchecker/util/pipeline/tasks_web/task_web_similars.py
chemicalchecker/util/plot/__init__.py
chemicalchecker/util/plot/diagnosticsplot.py
chemicalchecker/util/plot/multiccplot.py
chemicalchecker/util/plot/multiplot.py
chemicalchecker/util/plot/plot.py
chemicalchecker/util/plot/util.py
chemicalchecker/util/psql/__init__.py
chemicalchecker/util/psql/psql.py
chemicalchecker/util/remove_near_duplicates/__init__.py
chemicalchecker/util/remove_near_duplicates/remove_near_duplicates.py
chemicalchecker/util/sampler/__init__.py
chemicalchecker/util/sampler/triplets.py
chemicalchecker/util/sanitize/__init__.py
chemicalchecker/util/sanitize/sanitizer.py
chemicalchecker/util/splitter/__init__.py
chemicalchecker/util/splitter/ae_siam_traintest.py
chemicalchecker/util/splitter/globalneighbortriplets.py
chemicalchecker/util/splitter/neighborerror.py
chemicalchecker/util/splitter/neighborpair.py
chemicalchecker/util/splitter/neighbortriplet.py
chemicalchecker/util/splitter/pairtraintest.py
chemicalchecker/util/splitter/traintest.py
chemicalchecker/util/transform/__init__.py
chemicalchecker/util/transform/base.py
chemicalchecker/util/transform/gaussian_scale_impute.py
chemicalchecker/util/transform/gaussianize.py
chemicalchecker/util/transform/lsi.py
chemicalchecker/util/transform/metric_learn.py
chemicalchecker/util/transform/pca.py
chemicalchecker/util/transform/scale.py
docs/Makefile
docs/conf.py
docs/index.rst
docs/make.bat
docs/manifesto.rst
docs/signaturization.rst
docs/sources.rst
docs/_static/css/logo.css
docs/_static/css/overrides.css
docs/_templates/custom-class-template.rst
docs/_templates/custom-module-template.rst
docs/img/favicon.ico
docs/img/logo.svg
docs/img/preprocessing.png