AUTHORS
CHANGELOG.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
chanjo/__init__.py
chanjo/cli.py
chanjo/compat.py
chanjo/exc.py
chanjo/log.py
chanjo.egg-info/PKG-INFO
chanjo.egg-info/SOURCES.txt
chanjo.egg-info/dependency_links.txt
chanjo.egg-info/entry_points.txt
chanjo.egg-info/not-zip-safe
chanjo.egg-info/requires.txt
chanjo.egg-info/top_level.txt
chanjo/calculate/__init__.py
chanjo/calculate/cli.py
chanjo/calculate/mixins.py
chanjo/calculate/utils.py
chanjo/init/__init__.py
chanjo/init/bootstrap.py
chanjo/init/cli.py
chanjo/init/demo.py
chanjo/init/demo-files/ccds.min.bed
chanjo/init/demo-files/sample1.coverage.bed
chanjo/init/demo-files/sample2.coverage.bed
chanjo/init/demo-files/sample3.coverage.bed
chanjo/init/demo-files/sample4.coverage.bed
chanjo/init/demo-files/sample5.coverage.bed
chanjo/load/__init__.py
chanjo/load/cli.py
chanjo/load/link.py
chanjo/load/sambamba.py
chanjo/load/utils.py
chanjo/load/parse/__init__.py
chanjo/load/parse/bed.py
chanjo/load/parse/sambamba.py
chanjo/sambamba/__init__.py
chanjo/sambamba/cli.py
chanjo/sambamba/run.py
chanjo/sex/__init__.py
chanjo/sex/cli.py
chanjo/sex/core.py
chanjo/store/__init__.py
chanjo/store/api.py
chanjo/store/cli.py
chanjo/store/constants.py
chanjo/store/models.py
tests/conftest.py
tests/test_cli.py
tests/calculate/test_calculate_cli.py
tests/calculate/test_calculate_mixins.py
tests/calculate/test_calculate_utils.py
tests/fixtures/ccds-mini.bed
tests/fixtures/ccds-mini.sorted.bam
tests/fixtures/ccds-mini.sorted.bam.bai
tests/fixtures/sambamba.depth.bed
tests/init/test_init_bootstrap.py
tests/init/test_init_cli.py
tests/init/test_init_demo.py
tests/init/test_utils.py
tests/load/test_load_cli.py
tests/load/test_load_link.py
tests/load/test_load_sambamba.py
tests/load/test_load_utils.py
tests/load/parse/test_load_parse_bed.py
tests/load/parse/test_load_parse_sambamba.py
tests/sambamba/test_sambamba_cli.py
tests/sambamba/test_sambamba_run.py
tests/sex/test_sex_cli.py
tests/sex/test_sex_core.py
tests/store/test_store_api.py
tests/store/test_store_cli.py
tests/store/test_store_models.py