MANIFEST.in
README.md
requirements.txt
setup.py
cgstats/__init__.py
cgstats/cli.py
cgstats/initialize.py
cgstats/settings.py
cgstats/xparseunaligned.py
cgstats.egg-info/PKG-INFO
cgstats.egg-info/SOURCES.txt
cgstats.egg-info/dependency_links.txt
cgstats.egg-info/entry_points.txt
cgstats.egg-info/not-zip-safe
cgstats.egg-info/requires.txt
cgstats.egg-info/top_level.txt
cgstats/analysis/__init__.py
cgstats/analysis/api.py
cgstats/analysis/cli.py
cgstats/analysis/export.py
cgstats/analysis/mip.py
cgstats/analysis/models.py
cgstats/db/__init__.py
cgstats/db/api.py
cgstats/db/cli.py
cgstats/db/models.py
cgstats/db/parse.py
cgstats/db/xparse.py
cgstats/utils/__init__.py
cgstats/utils/stats.py
cgstats/utils/utils.py
cgstats/utils/xstats.py
clinstatsweb/__init__.py
clinstatsweb/app.py
tests/conftest.py
tests/cgstats/db/test_db.py
tests/cgstats/db/test_parse.py
tests/cgstats/db/test_xparse.py
tests/cgstats/utils/test_stats.py
tests/cgstats/utils/test_utils.py
tests/cgstats/utils/test_xstats.py
tests/fixtures/family_qc_sampleInfo.yaml
tests/fixtures/family_qcmetrics.yaml
tests/fixtures/qc_pedigree.yaml
tests/fixtures/test_config.yaml
tests/fixtures/150114_D00134_0168_AHB07NADXX/SampleSheet.csv
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/DemultiplexConfig.xml
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/DemultiplexedBustardConfig.xml
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/DemultiplexedBustardSummary.xml
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/support.txt
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/Basecall_Stats_HB07NADXX/BustardSummary.xml
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/Basecall_Stats_HB07NADXX/BustardSummary.xsl
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/Basecall_Stats_HB07NADXX/Demultiplex_Stats.htm
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/Basecall_Stats_HB07NADXX/Flowcell_demux_summary.xml
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/Basecall_Stats_HB07NADXX/config.xml
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/Project_454557/.gitignore
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/Project_504910/.gitignore
tests/fixtures/150114_D00134_0168_AHB07NADXX/Unaligned/Project_959191/.gitignore
tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/SampleSheet.csv
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tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/Unaligned/.gitignore
tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/l1t11/Stats/ConversionStats.xml
tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/l1t11/Stats/DemultiplexingStats.xml
tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/l1t21/Stats/ConversionStats.xml
tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/l1t21/Stats/DemultiplexingStats.xml
tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/l2t11/Stats/ConversionStats.xml
tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/l2t11/Stats/DemultiplexingStats.xml
tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/l2t21/Stats/ConversionStats.xml
tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/l2t21/Stats/DemultiplexingStats.xml
tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/l3t11/Stats/ConversionStats.xml
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tests/fixtures/161125_ST-E00269_0150_AH37GVALXX/l4t21/Stats/ConversionStats.xml
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