"""utilities package."""

from cgexplore._internal.utilities.chemiscope_interface import (
    write_chemiscope_json,
)
from cgexplore._internal.utilities.databases import AtomliteDatabase
from cgexplore._internal.utilities.errors import (
    ForceFieldUnavailableError,
    ForceFieldUnitError,
)
from cgexplore._internal.utilities.generation_utilities import (
    optimise_ligand,
    run_constrained_optimisation,
    run_optimisation,
    run_soft_md_cycle,
    shift_beads,
    soften_forcefield,
    yield_near_models,
    yield_shifted_models,
)
from cgexplore._internal.utilities.spindry_utilities import (
    get_supramolecule,
    get_unforced_supramolecule,
)
from cgexplore._internal.utilities.utilities import (
    check_directory,
    convert_pyramid_angle,
    draw_pie,
    extract_property,
)
from cgexplore._internal.utilities.visualisation import (
    Pymol,
    add_structure_to_ax,
    add_text_to_ax,
)

__all__ = [
    "Pymol",
    "ForceFieldUnavailableError",
    "ForceFieldUnitError",
    "check_directory",
    "draw_pie",
    "AtomliteDatabase",
    "write_chemiscope_json",
    "convert_pyramid_angle",
    "optimise_ligand",
    "run_constrained_optimisation",
    "run_optimisation",
    "run_soft_md_cycle",
    "shift_beads",
    "soften_forcefield",
    "yield_near_models",
    "yield_shifted_models",
    "add_structure_to_ax",
    "add_text_to_ax",
    "get_supramolecule",
    "get_unforced_supramolecule",
    "extract_property",
]
