Metadata-Version: 1.1
Name: cgatshowcase
Version: 0.1.3
Summary: cgatshowcase : the Computational Genomics Analysis Toolkit example pipeline/workflow
Home-page: https://github.com/cgat-developers/cgat-showcase
Author: Adam Cribbs
Author-email: adam.cribbs@imm.ox.ac.uk
License: MIT
Description: # cgat-showcase
        
        cgat-showcase is a showcase example pipeline constructed using our [cgat-core](https://github.com/cgat-developers/cgat-core) workflow management system.
        
        Within this repository we have an example of one [pipeline](https://github.com/cgat-developers/cgat-showcase/blob/master/cgatshowcase/pipeline_transdiffexprs.py) that performs pseudoalignment
        with kallisto and differential expression using deseq2. It can be ran locally or distributed across a cluster.
        
        Documentation on how to run this pipeline can be found [here](https://cgat-showcase.readthedocs.io/en/latest/) and documentation on how
        to build a workflow from scratch can be found [here](https://cgat-core.readthedocs.io/en/latest/defining_workflow/Tutorial.html).
        
        Installation
        ------------
        
        The following sections describe how to install the cgat-showcase pipeline.
        
        We recommend installing using conda and the steps are described below::
        
           `conda install -c cgat cgatshowcase`
        
        Alternatively, the pipeline can be installed using pip::
        
           `pip install cgatshowcase`
        
        However, you will require certain software to run the pipeline. More detail on installation can be found on the [Installation](https://cgat-showcase.readthedocs.io/en/latest/getting_started/Installation.html) documentation.
        
Keywords: computational genomics
Platform: any
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved
Classifier: Programming Language :: Python
Classifier: Topic :: Software Development
Classifier: Topic :: Scientific/Engineering
Classifier: Operating System :: POSIX
Classifier: Operating System :: Unix
Classifier: Operating System :: MacOS
