INSTALL
KNOWN_BUGS
LICENSE
MANIFEST.in
README.rst
README.txt
THANKS.txt
requires.txt
setup.cfg
setup.py
CGATReport/Cache.py
CGATReport/Component.py
CGATReport/Config.py
CGATReport/CorrespondenceAnalysis.py
CGATReport/DataTree.py
CGATReport/DataTypes.py
CGATReport/Dispatcher.py
CGATReport/Histogram.py
CGATReport/Logger.py
CGATReport/Logger_test.py
CGATReport/ResultBlock.py
CGATReport/SQLDatabase.py
CGATReport/Stats.py
CGATReport/Tracker.py
CGATReport/Utils.py
CGATReport/__init__.py
CGATReport/build.py
CGATReport/clean.py
CGATReport/errors_directive.py
CGATReport/gallery.py
CGATReport/get.py
CGATReport/only_directives.py
CGATReport/profile.py
CGATReport/quickstart.py
CGATReport/report_directive.py
CGATReport/roles.py
CGATReport/serve.py
CGATReport/test.py
CGATReport/warnings_directive.py
CGATReport.egg-info/PKG-INFO
CGATReport.egg-info/SOURCES.txt
CGATReport.egg-info/dependency_links.txt
CGATReport.egg-info/entry_points.txt
CGATReport.egg-info/not-zip-safe
CGATReport.egg-info/requires.txt
CGATReport.egg-info/top_level.txt
CGATReport/images/fail.png
CGATReport/images/not_available.png
CGATReport/images/pass.png
CGATReport/images/warning.png
CGATReport/templates/Makefile
CGATReport/templates/PipelineTest.rst
CGATReport/templates/Results.rst
CGATReport/templates/Trackers.py
CGATReport/templates/analysis.rst
CGATReport/templates/cgat.css_t
CGATReport/templates/cgatreport.ini
CGATReport/templates/conf.py
CGATReport/templates/contents.rst
CGATReport/templates/data_table.html
CGATReport/templates/indexsidebar.html
CGATReport/templates/layout.html
CGATReport/templates/pipeline.rst
CGATReport/templates/search.html
CGATReport/templates/server.py
CGATReport/templates/theme.conf
CGATReport/templates/usage.rst
CGATReportPlugins/BokehPlotter.py
CGATReportPlugins/GGPlotter.py
CGATReportPlugins/PandasPlotter.py
CGATReportPlugins/Plotter.py
CGATReportPlugins/RPlotter.py
CGATReportPlugins/Renderer.py
CGATReportPlugins/Seaborn.py
CGATReportPlugins/SlideShow.py
CGATReportPlugins/Transformer.py
CGATReportPlugins/TransformersGeneLists.py
CGATReportPlugins/__init__.py
CGATReportPlugins/BokehPlugin/__init__.py
CGATReportPlugins/HTMLPlugin/__init__.py
CGATReportPlugins/MatplotlibPlugin/__init__.py
CGATReportPlugins/RPlotPlugin/__init__.py
CGATReportPlugins/RSTPlugin/__init__.py
CGATReportPlugins/XLSPlugin/__init__.py
doc/Advanced.rst
doc/Background.rst
doc/ComplexDocuments.rst
doc/DataMapping.rst
doc/DataTypes.rst
doc/Developing.rst
doc/Errors.rst
doc/Examples.rst
doc/FAQ.rst
doc/GalleryBarplots.rst
doc/GalleryBokeh.rst
doc/GalleryBoxPlots.rst
doc/GalleryConfig.rst
doc/GalleryDataframe.rst
doc/GalleryDebug.rst
doc/GalleryGGPlot.rst
doc/GalleryGallery.rst
doc/GalleryHistograms.rst
doc/GalleryLayout.rst
doc/GalleryLegends.rst
doc/GalleryLinePlots.rst
doc/GalleryMatplotlibPlots.rst
doc/GalleryMatrices.rst
doc/GalleryOptions.rst
doc/GalleryPDPlot.rst
doc/GalleryPiePlots.rst
doc/GalleryR.rst
doc/GalleryRPlots.rst
doc/GalleryScatterPlots.rst
doc/GallerySeaborn.rst
doc/GallerySeabornBoxPlots.rst
doc/GallerySeabornDensityPlots.rst
doc/GallerySeabornHeatmapPlots.rst
doc/GallerySeabornScatterPlots.rst
doc/GallerySlideShowPlot.rst
doc/GallerySpecial.rst
doc/GalleryStatus.rst
doc/GalleryTables.rst
doc/GalleryTabular.rst
doc/GalleryUser.rst
doc/GalleryVenn.rst
doc/GalleryViolinPlots.rst
doc/GeneLists.rst
doc/GenomeInformatics2014Example.rst
doc/Glossary.rst
doc/Introduction.rst
doc/Makefile
doc/Overview.rst
doc/Plotter.rst
doc/Reference.rst
doc/Renderer.rst
doc/Renderers.rst
doc/Roadmap.rst
doc/Roles.rst
doc/Running.rst
doc/Server.rst
doc/Test.rst
doc/TestConfig.rst
doc/TestErrors.rst
doc/TestExceptions.rst
doc/TestHistogram.rst
doc/TestLargeMatrix.rst
doc/TestLayout.rst
doc/TestLegend.rst
doc/TestMatrix.rst
doc/TestMultiHistogram.rst
doc/TestMultilinePlot.rst
doc/TestParameter.rst
doc/TestRRendering.rst
doc/TestSandbox.rst
doc/TestStatus.rst
doc/TestTable.rst
doc/TestUser.rst
doc/TipsTricks.rst
doc/Tracker.rst
doc/TrackerSQL.rst
doc/Trackers.rst
doc/TrackersOld.rst
doc/Transformations.rst
doc/Transformer.rst
doc/Tutorial1.rst
doc/Tutorial10.rst
doc/Tutorial11.rst
doc/Tutorial12.rst
doc/Tutorial13.rst
doc/Tutorial14.rst
doc/Tutorial15.rst
doc/Tutorial16.rst
doc/Tutorial1Demo.rst
doc/Tutorial2.rst
doc/Tutorial2Demo.rst
doc/Tutorial3.rst
doc/Tutorial3Demo.rst
doc/Tutorial4.rst
doc/Tutorial4Demo.rst
doc/Tutorial5.rst
doc/Tutorial5Demo.rst
doc/Tutorial6.rst
doc/Tutorial6Demo.rst
doc/Tutorial7.rst
doc/Tutorial8.rst
doc/Tutorial9.rst
doc/Tutorials.rst
doc/UseCase.rst
doc/Utilities.rst
doc/conf.py
doc/contents.rst
doc/fill.py
doc/server.py
doc/_templates/CGATReport.png
doc/_templates/index.html
doc/_templates/layout.html
doc/trackers/DataMapping.py
doc/trackers/Genelists.py
doc/trackers/MyPlots.py
doc/trackers/TestCases.py
doc/trackers/Trackers.py
doc/trackers/Trackers_test.py
doc/trackers/Transformers.py
doc/trackers/Tutorial1.py
doc/trackers/Tutorial10.py
doc/trackers/Tutorial2.py
doc/trackers/Tutorial3.py
doc/trackers/Tutorial4.py
doc/trackers/Tutorial5.py
doc/trackers/Tutorial8.py
doc/trackers/Tutorial9.py
doc/trackers/UserTrackers.py
tests/SphinxReport_test.py
tests/TestTrackers.py
tests/__init__.py
tests/test_conversion.py
tests/test_writing.py