# latest setutools required for automatic cythonization
#
# AH: removed dependencies not required for scripts
setuptools>=1.1
pyparsing>=1.5.7
cython>=0.19
numpy>=1.7
MySQL-python>1.2.3
PyYAML>=3.1.0
alignlib-lite>=0.2.3
biopython>=1.61
# AH: drmaa>=0.5
# AH: hgapi>=1.3.0
# AH: matplotlib-venn>=0.5
matplotlib>=1.3.0
networkx>=1.8.1
# AH: openpyxl>=1.5.7
pandas>=0.12.0
pysam>=0.8.3
rdflib>=0.4.1
psycopg2>=2.5
rpy2>=2.4,<2.5
ruffus>=2.4
scipy>=0.11
#https://bitbucket.org/james_taylor/bx-python/get/tip.tar.bz2
#-e hg+http://bitbucket.org/james_taylor/bx-python#egg=bx-python-0.7.2
sphinx>=1.0.5
# AH: sphinxcontrib-programoutput>=0.8
# AH: sqlalchemy>=0.7.0
# AH: threadpool>=1.2.7
# AH: web.py>=0.37
weblogo>=3.0
ggplot>=0.6.5
# xlwt>=0.7.4
pybedtools>=0.6.5
pep8>=1.4.0
# CGATReport>=0.2.1
