setuptools>=1.1
pyparsing>=1.5.7
cython>=0.19
numpy>=1.7
MySQL-python>1.2.3
PyYAML>=3.1.0
alignlib-lite>=0.2.3
biopython>=1.61
matplotlib>=1.3.0
networkx>=1.8.1
pandas>=0.12.0
pysam>=0.8.3
rdflib>=0.4.1
psycopg2>=2.5
rpy2>=2.4,<2.5
ruffus>=2.4
scipy>=0.11
sphinx>=1.0.5
weblogo>=3.0
ggplot>=0.6.5
pybedtools>=0.6.5
pep8>=1.4.0
web.py>=0.37
xlwt>=0.7.4
matplotlib-venn>=0.5
