MySQL-python>1.2.3
PyGreSQL>=4.1.1
PyYAML>=3.1.0
SphinxReport>=2.0
alignlib-lite>=0.2
biopython>=1.61
drmaa>=0.5
hgapi>=1.3.0
matplotlib-venn>=0.5
matplotlib>=1.3.0
networkx>=1.8.1
numpy>=1.7
openpyxl>=1.5.7
pandas>=0.12.0
pysam>=0.7.6
rdflib>=0.4.1
rpy2>=2.3.4
ruffus>=2.2
scipy>=0.11
# latest setutools required for automatic cythonization
setuptools>=1.1
sphinx>=1.0.5
sphinxcontrib-programoutput>=0.8
sqlalchemy>=0.7.0
threadpool>=1.2.7
web.py>=0.37
weblogo>=3.0
xlwt>=0.7.4
