\relax 
\providecommand\hyper@newdestlabel[2]{}
\@nameuse{bbl@beforestart}
\providecommand\HyperFirstAtBeginDocument{\AtBeginDocument}
\HyperFirstAtBeginDocument{\ifx\hyper@anchor\@undefined
\global\let\oldcontentsline\contentsline
\gdef\contentsline#1#2#3#4{\oldcontentsline{#1}{#2}{#3}}
\global\let\oldnewlabel\newlabel
\gdef\newlabel#1#2{\newlabelxx{#1}#2}
\gdef\newlabelxx#1#2#3#4#5#6{\oldnewlabel{#1}{{#2}{#3}}}
\AtEndDocument{\ifx\hyper@anchor\@undefined
\let\contentsline\oldcontentsline
\let\newlabel\oldnewlabel
\fi}
\fi}
\global\let\hyper@last\relax 
\gdef\HyperFirstAtBeginDocument#1{#1}
\providecommand\HyField@AuxAddToFields[1]{}
\providecommand\HyField@AuxAddToCoFields[2]{}
\babel@aux{english}{}
\newlabel{index::doc}{{}{1}{}{section*.2}{}}
\@writefile{toc}{\contentsline {chapter}{\numberline {1}Contents}{3}{chapter.1}\protected@file@percent }
\@writefile{lof}{\addvspace {10\p@ }}
\@writefile{lot}{\addvspace {10\p@ }}
\newlabel{index:contents}{{1}{3}{Contents}{chapter.1}{}}
\@writefile{toc}{\contentsline {section}{\numberline {1.1}Getting started with hpc\sphinxhyphen {}tools}{3}{section.1.1}\protected@file@percent }
\newlabel{getting_started:getting-started-with-hpc-tools}{{1.1}{3}{Getting started with hpc\sphinxhyphen {}tools}{section.1.1}{}}
\newlabel{getting_started::doc}{{1.1}{3}{Getting started with hpc\sphinxhyphen {}tools}{section.1.1}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.1.1}Installation instructions}{3}{subsection.1.1.1}\protected@file@percent }
\newlabel{getting_started:installation-instructions}{{1.1.1}{3}{Installation instructions}{subsection.1.1.1}{}}
\@writefile{toc}{\contentsline {subsubsection}{Installation not using any conda dependencies}{3}{subsubsection*.3}\protected@file@percent }
\newlabel{getting_started:installation-not-using-any-conda-dependencies}{{1.1.1}{3}{Installation not using any conda dependencies}{subsubsection*.3}{}}
\@writefile{toc}{\contentsline {subsubsection}{Installation using conda}{4}{subsubsection*.4}\protected@file@percent }
\newlabel{getting_started:installation-using-conda}{{1.1.1}{4}{Installation using conda}{subsubsection*.4}{}}
\@writefile{toc}{\contentsline {subsubsection}{Post Python install}{4}{subsubsection*.5}\protected@file@percent }
\newlabel{getting_started:post-python-install}{{1.1.1}{4}{Post Python install}{subsubsection*.5}{}}
\@writefile{toc}{\contentsline {paragraph}{Setup a mapping file}{4}{paragraph*.6}\protected@file@percent }
\newlabel{getting_started:setup-a-mapping-file}{{1.1.1}{4}{Setup a mapping file}{paragraph*.6}{}}
\@writefile{toc}{\contentsline {paragraph}{Add the \sphinxstyleliteralintitle {\sphinxupquote {bin}} directory to your \sphinxstyleliteralintitle {\sphinxupquote {PATH}}}{5}{paragraph*.7}\protected@file@percent }
\newlabel{getting_started:add-the-bin-directory-to-your-path}{{1.1.1}{5}{Add the \sphinxstyleliteralintitle {\sphinxupquote {bin}} directory to your \sphinxstyleliteralintitle {\sphinxupquote {PATH}}}{paragraph*.7}{}}
\@writefile{toc}{\contentsline {section}{\numberline {1.2}General Workflow}{5}{section.1.2}\protected@file@percent }
\newlabel{workflow:general-workflow}{{1.2}{5}{General Workflow}{section.1.2}{}}
\newlabel{workflow::doc}{{1.2}{5}{General Workflow}{section.1.2}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.2.1}Array Jobs}{5}{subsection.1.2.1}\protected@file@percent }
\newlabel{workflow:array-jobs}{{1.2.1}{5}{Array Jobs}{subsection.1.2.1}{}}
\@writefile{toc}{\contentsline {section}{\numberline {1.3}Example job array}{7}{section.1.3}\protected@file@percent }
\newlabel{example_job_array:example-job-array}{{1.3}{7}{Example job array}{section.1.3}{}}
\newlabel{example_job_array::doc}{{1.3}{7}{Example job array}{section.1.3}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.3.1}Creating example files}{7}{subsection.1.3.1}\protected@file@percent }
\newlabel{example_job_array:creating-example-files}{{1.3.1}{7}{Creating example files}{subsection.1.3.1}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.3.2}Creating a job array file}{7}{subsection.1.3.2}\protected@file@percent }
\newlabel{example_job_array:creating-a-job-array-file}{{1.3.2}{7}{Creating a job array file}{subsection.1.3.2}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.3.3}Testing the task script}{9}{subsection.1.3.3}\protected@file@percent }
\newlabel{example_job_array:testing-the-task-script}{{1.3.3}{9}{Testing the task script}{subsection.1.3.3}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.3.4}Job array arguments}{10}{subsection.1.3.4}\protected@file@percent }
\newlabel{example_job_array:job-array-arguments}{{1.3.4}{10}{Job array arguments}{subsection.1.3.4}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.3.5}Running the jobs}{11}{subsection.1.3.5}\protected@file@percent }
\newlabel{example_job_array:running-the-jobs}{{1.3.5}{11}{Running the jobs}{subsection.1.3.5}{}}
\@writefile{toc}{\contentsline {section}{\numberline {1.4}Command\sphinxhyphen {}line endpoints}{15}{section.1.4}\protected@file@percent }
\newlabel{scripts:command-line-endpoints}{{1.4}{15}{Command\sphinxhyphen {}line endpoints}{section.1.4}{}}
\newlabel{scripts::doc}{{1.4}{15}{Command\sphinxhyphen {}line endpoints}{section.1.4}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.4.1}\sphinxstyleliteralintitle {\sphinxupquote {pyjasub}}}{15}{subsection.1.4.1}\protected@file@percent }
\newlabel{scripts/pyjasub:pyjasub}{{1.4.1}{15}{\sphinxstyleliteralintitle {\sphinxupquote {pyjasub}}}{subsection.1.4.1}{}}
\newlabel{scripts/pyjasub::doc}{{1.4.1}{15}{\sphinxstyleliteralintitle {\sphinxupquote {pyjasub}}}{subsection.1.4.1}{}}
\@writefile{toc}{\contentsline {subsubsection}{Setup}{15}{subsubsection*.8}\protected@file@percent }
\newlabel{scripts/pyjasub:setup}{{1.4.1}{15}{Setup}{subsubsection*.8}{}}
\@writefile{toc}{\contentsline {subsubsection}{Usage}{16}{subsubsection*.9}\protected@file@percent }
\newlabel{scripts/pyjasub:usage}{{1.4.1}{16}{Usage}{subsubsection*.9}{}}
\@writefile{toc}{\contentsline {paragraph}{Positional Arguments}{16}{paragraph*.10}\protected@file@percent }
\newlabel{scripts/pyjasub:Positional Arguments}{{1.4.1}{16}{Positional Arguments}{paragraph*.10}{}}
\@writefile{toc}{\contentsline {paragraph}{Named Arguments}{16}{paragraph*.11}\protected@file@percent }
\newlabel{scripts/pyjasub:Named Arguments}{{1.4.1}{16}{Named Arguments}{paragraph*.11}{}}
\@writefile{toc}{\contentsline {subsubsection}{Job submission workflow}{17}{subsubsection*.12}\protected@file@percent }
\newlabel{scripts/pyjasub:job-submission-workflow}{{1.4.1}{17}{Job submission workflow}{subsubsection*.12}{}}
\@writefile{toc}{\contentsline {subsubsection}{Checks on the job array file}{20}{subsubsection*.13}\protected@file@percent }
\newlabel{scripts/pyjasub:checks-on-the-job-array-file}{{1.4.1}{20}{Checks on the job array file}{subsubsection*.13}{}}
\@writefile{toc}{\contentsline {subsubsection}{Defining a completed job}{20}{subsubsection*.14}\protected@file@percent }
\newlabel{scripts/pyjasub:defining-a-completed-job}{{1.4.1}{20}{Defining a completed job}{subsubsection*.14}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.4.2}\sphinxstyleliteralintitle {\sphinxupquote {make\sphinxhyphen {}jaf}}}{20}{subsection.1.4.2}\protected@file@percent }
\newlabel{scripts/make_jaf:make-jaf}{{1.4.2}{20}{\sphinxstyleliteralintitle {\sphinxupquote {make\sphinxhyphen {}jaf}}}{subsection.1.4.2}{}}
\newlabel{scripts/make_jaf::doc}{{1.4.2}{20}{\sphinxstyleliteralintitle {\sphinxupquote {make\sphinxhyphen {}jaf}}}{subsection.1.4.2}{}}
\@writefile{toc}{\contentsline {subsubsection}{Usage}{20}{subsubsection*.15}\protected@file@percent }
\newlabel{scripts/make_jaf:usage}{{1.4.2}{20}{Usage}{subsubsection*.15}{}}
\@writefile{toc}{\contentsline {paragraph}{Positional Arguments}{20}{paragraph*.16}\protected@file@percent }
\newlabel{scripts/make_jaf:Positional Arguments}{{1.4.2}{20}{Positional Arguments}{paragraph*.16}{}}
\@writefile{toc}{\contentsline {paragraph}{Named Arguments}{21}{paragraph*.17}\protected@file@percent }
\newlabel{scripts/make_jaf:Named Arguments}{{1.4.2}{21}{Named Arguments}{paragraph*.17}{}}
\@writefile{toc}{\contentsline {subsubsection}{Output file}{21}{subsubsection*.18}\protected@file@percent }
\newlabel{scripts/make_jaf:output-file}{{1.4.2}{21}{Output file}{subsubsection*.18}{}}
\@writefile{toc}{\contentsline {subsubsection}{Basic API usage}{22}{subsubsection*.19}\protected@file@percent }
\newlabel{scripts/make_jaf:basic-api-usage}{{1.4.2}{22}{Basic API usage}{subsubsection*.19}{}}
\@writefile{toc}{\contentsline {section}{\numberline {1.5}Contributing to the project}{22}{section.1.5}\protected@file@percent }
\newlabel{contributing:contributing-to-the-project}{{1.5}{22}{Contributing to the project}{section.1.5}{}}
\newlabel{contributing::doc}{{1.5}{22}{Contributing to the project}{section.1.5}{}}
\@writefile{toc}{\contentsline {section}{\numberline {1.6}Package management}{23}{section.1.6}\protected@file@percent }
\newlabel{package_management:package-management}{{1.6}{23}{Package management}{section.1.6}{}}
\newlabel{package_management::doc}{{1.6}{23}{Package management}{section.1.6}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.6.1}Versioning}{23}{subsection.1.6.1}\protected@file@percent }
\newlabel{package_management:versioning}{{1.6.1}{23}{Versioning}{subsection.1.6.1}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.6.2}Building the documentation}{25}{subsection.1.6.2}\protected@file@percent }
\newlabel{package_management:building-the-documentation}{{1.6.2}{25}{Building the documentation}{subsection.1.6.2}{}}
\@writefile{toc}{\contentsline {subsubsection}{Initialisation}{26}{subsubsection*.20}\protected@file@percent }
\newlabel{package_management:initialisation}{{1.6.2}{26}{Initialisation}{subsubsection*.20}{}}
\@writefile{toc}{\contentsline {subsubsection}{Configuration}{27}{subsubsection*.21}\protected@file@percent }
\newlabel{package_management:configuration}{{1.6.2}{27}{Configuration}{subsubsection*.21}{}}
\@writefile{toc}{\contentsline {subsubsection}{Building HTML}{27}{subsubsection*.22}\protected@file@percent }
\newlabel{package_management:building-html}{{1.6.2}{27}{Building HTML}{subsubsection*.22}{}}
\@writefile{toc}{\contentsline {subsubsection}{Building PDF}{27}{subsubsection*.23}\protected@file@percent }
\newlabel{package_management:building-pdf}{{1.6.2}{27}{Building PDF}{subsubsection*.23}{}}
\@writefile{toc}{\contentsline {subsubsection}{Helper script}{27}{subsubsection*.24}\protected@file@percent }
\newlabel{package_management:helper-script}{{1.6.2}{27}{Helper script}{subsubsection*.24}{}}
\@writefile{toc}{\contentsline {chapter}{\numberline {2}Indices and tables}{29}{chapter.2}\protected@file@percent }
\@writefile{lof}{\addvspace {10\p@ }}
\@writefile{lot}{\addvspace {10\p@ }}
\newlabel{index:indices-and-tables}{{2}{29}{Indices and tables}{chapter.2}{}}
