LICENSE.md
MANIFEST.in
README.md
setup.cfg
setup.py
cfdna/__init__.py
cfdna/__main__.py
cfdna.egg-info/PKG-INFO
cfdna.egg-info/SOURCES.txt
cfdna.egg-info/dependency_links.txt
cfdna.egg-info/not-zip-safe
cfdna.egg-info/requires.txt
cfdna.egg-info/top_level.txt
cfdna/commandline/__init__.py
cfdna/commandline/commands.py
cfdna/core/__init__.py
cfdna/core/cfDNA.py
cfdna/io/__init__.py
cfdna/io/read/__init__.py
cfdna/io/read/read_bam.py
cfdna/io/read/read_h5.py
cfdna/io/write/__init__.py
cfdna/io/write/write_h5.py
cfdna/io/write/write_text.py
cfdna/plot/__init__.py
cfdna/plot/plot_bokeh.py
cfdna/plot/plot_plt.py
cfdna/processing/__init__.py
cfdna/processing/cnv/__init__.py
cfdna/processing/cnv/segmentation.py
cfdna/processing/fragmentation/__init__.py
cfdna/processing/fragmentation/frag_pattern.py
cfdna/processing/nucleosome/__init__.py
cfdna/processing/nucleosome/nfr.py
cfdna/processing/nucleosome/wps.py
cfdna/processing/summarize/__init__.py
cfdna/processing/summarize/summarize.py
cfdna/utilities/__init__.py
cfdna/utilities/h5_utilities.py
data/hg19_CTCF.bed
data/hg19_TSS.bed
data/hg19_centro.txt
data/hg19_chrom_sizes.txt
data/hg19_detail_genes.txt
data/hg19_ucsc_bin100000.h5