.gitignore
CHANGELOG.md
LICENSE.md
MANIFEST.in
README.md
THIRD_PARTY_LICENSES.txt
build-docs.sh
dev-requirements.txt
pyproject.toml
requirements.txt
uv.lock
cemento/__init__.py
cemento/main.py
cemento.egg-info/PKG-INFO
cemento.egg-info/SOURCES.txt
cemento.egg-info/dependency_links.txt
cemento.egg-info/entry_points.txt
cemento.egg-info/requires.txt
cemento.egg-info/top_level.txt
cemento/axioms/__init__.py
cemento/axioms/constants.py
cemento/axioms/extract_axioms.py
cemento/axioms/modules/__init__.py
cemento/axioms/modules/ms.py
cemento/cli/__init__.py
cemento/cli/constants.py
cemento/cli/download.py
cemento/cli/drawio_rdf.py
cemento/cli/drawio_ttl.py
cemento/cli/rdf_drawio.py
cemento/cli/ttl_drawio.py
cemento/data/default_prefixes.json
cemento/data/defaults/owl.ttl
cemento/data/defaults/rdf.ttl
cemento/data/defaults/rdfs.ttl
cemento/data/defaults/skos.ttl
cemento/data/references/cco.ttl
cemento/data/references/mds_onto.ttl
cemento/data/reserved/ms.ttl
cemento/draw_io/__init__.py
cemento/draw_io/constants.py
cemento/draw_io/io.py
cemento/draw_io/preprocessing.py
cemento/draw_io/read_diagram.py
cemento/draw_io/transforms.py
cemento/draw_io/write_diagram.py
cemento/pun/__init__.py
cemento/pun/resolve_puns.py
cemento/rdf/__init__.py
cemento/rdf/constants.py
cemento/rdf/drawio_to_rdf.py
cemento/rdf/io.py
cemento/rdf/preprocessing.py
cemento/rdf/rdf_to_drawio.py
cemento/rdf/rdf_to_graph.py
cemento/rdf/transforms.py
cemento/templates/circle.xml
cemento/templates/class.xml
cemento/templates/connector.xml
cemento/templates/instance.xml
cemento/templates/line.xml
cemento/templates/literal.xml
cemento/templates/scaffold.xml
cemento/templates/shape.xml
cemento/term_matching/constants.py
cemento/term_matching/io.py
cemento/term_matching/preprocessing.py
cemento/term_matching/transforms.py
cemento/utils/__init__.py
cemento/utils/constants.py
cemento/utils/io.py
cemento/utils/utils.py
docs/.nojekyll
docs/about.html
docs/cemento.cli.html
docs/cemento.draw_io.html
docs/cemento.html
docs/cemento.rdf.html
docs/cemento.utils.html
docs/changelog.html
docs/faqs.html
docs/genindex.html
docs/index.html
docs/licenses.html
docs/modules.html
docs/objects.inv
docs/py-modindex.html
docs/quickstart.html
docs/robots.txt
docs/search.html
docs/searchindex.js
docs/sitemap.xml
docs/usage.html
docs/user-guide.html
docs-src/Makefile
docs-src/make.bat
docs-src/build/doctest/output.txt
docs-src/build/doctest/_sphinx_design_static/design-tabs.js
docs-src/build/doctest/_sphinx_design_static/sphinx-design.min.css
docs-src/build/doctest/_static/_sphinx_iframe.css
docs-src/build/doctest/_static/h5p-resizer.js
docs-src/build/doctest/_static/sphinx_iframe.css
docs-src/build/doctrees/about.doctree
docs-src/build/doctrees/cemento.cli.doctree
docs-src/build/doctrees/cemento.doctree
docs-src/build/doctrees/cemento.draw_io.doctree
docs-src/build/doctrees/cemento.rdf.doctree
docs-src/build/doctrees/cemento.utils.doctree
docs-src/build/doctrees/changelog.doctree
docs-src/build/doctrees/environment.pickle
docs-src/build/doctrees/faqs.doctree
docs-src/build/doctrees/index.doctree
docs-src/build/doctrees/licenses.doctree
docs-src/build/doctrees/modules.doctree
docs-src/build/doctrees/quickstart.doctree
docs-src/build/doctrees/usage.doctree
docs-src/build/doctrees/user-guide.doctree
docs-src/build/doctrees/api-pages/cemento.axioms.doctree
docs-src/build/doctrees/api-pages/cemento.axioms.modules.doctree
docs-src/build/doctrees/api-pages/cemento.cli.doctree
docs-src/build/doctrees/api-pages/cemento.doctree
docs-src/build/doctrees/api-pages/cemento.draw_io.doctree
docs-src/build/doctrees/api-pages/cemento.rdf.doctree
docs-src/build/doctrees/api-pages/cemento.utils.doctree
docs-src/build/doctrees/api-pages/modules.doctree
docs-src/build/doctrees/external-licenses/licenses.doctree
docs-src/build/doctrees/external-licenses/third-party-licenses.doctree
docs-src/build/doctrees/license-info/all-licenses.doctree
docs-src/build/doctrees/license-info/licenses.doctree
docs-src/build/doctrees/user-guide/user-guide.doctree
docs-src/build/doctrees/user-guide-pages/axioms-overview.doctree
docs-src/build/doctrees/user-guide-pages/axioms-tutorial.doctree
docs-src/build/doctrees/user-guide-pages/cli-guide.doctree
docs-src/build/doctrees/user-guide-pages/drawing-basics.doctree
docs-src/build/doctrees/user-guide-pages/installation.doctree
docs-src/build/doctrees/user-guide-pages/scripting.doctree
docs-src/build/html/about.html
docs-src/build/html/cemento.cli.html
docs-src/build/html/cemento.draw_io.html
docs-src/build/html/cemento.html
docs-src/build/html/cemento.rdf.html
docs-src/build/html/cemento.utils.html
docs-src/build/html/changelog.html
docs-src/build/html/faqs.html
docs-src/build/html/genindex.html
docs-src/build/html/index.html
docs-src/build/html/licenses.html
docs-src/build/html/modules.html
docs-src/build/html/objects.inv
docs-src/build/html/py-modindex.html
docs-src/build/html/quickstart.html
docs-src/build/html/robots.txt
docs-src/build/html/search.html
docs-src/build/html/searchindex.js
docs-src/build/html/sitemap.xml
docs-src/build/html/usage.html
docs-src/build/html/user-guide.html
docs-src/build/html/_images/book.svg
docs-src/build/html/_images/faq-end-start-arrows.png
docs-src/build/html/_images/good-output.png
docs-src/build/html/_images/logo-light.svg
docs-src/build/html/_images/logo.svg
docs-src/build/html/_images/more.svg
docs-src/build/html/_images/running_person.svg
docs-src/build/html/_images/video.svg
docs-src/build/html/_sources/about.rst.txt
docs-src/build/html/_sources/cemento.cli.rst.txt
docs-src/build/html/_sources/cemento.draw_io.rst.txt
docs-src/build/html/_sources/cemento.rdf.rst.txt
docs-src/build/html/_sources/cemento.rst.txt
docs-src/build/html/_sources/cemento.utils.rst.txt
docs-src/build/html/_sources/changelog.rst.txt
docs-src/build/html/_sources/faqs.rst.txt
docs-src/build/html/_sources/index.rst.txt
docs-src/build/html/_sources/licenses.rst.txt
docs-src/build/html/_sources/modules.rst.txt
docs-src/build/html/_sources/quickstart.rst.txt
docs-src/build/html/_sources/usage.rst.txt
docs-src/build/html/_sources/user-guide.rst.txt
docs-src/build/html/_sources/api-pages/cemento.axioms.modules.rst.txt
docs-src/build/html/_sources/api-pages/cemento.axioms.rst.txt
docs-src/build/html/_sources/api-pages/cemento.cli.rst.txt
docs-src/build/html/_sources/api-pages/cemento.draw_io.rst.txt
docs-src/build/html/_sources/api-pages/cemento.rdf.rst.txt
docs-src/build/html/_sources/api-pages/cemento.rst.txt
docs-src/build/html/_sources/api-pages/cemento.utils.rst.txt
docs-src/build/html/_sources/api-pages/modules.rst.txt
docs-src/build/html/_sources/external-licenses/licenses.rst.txt
docs-src/build/html/_sources/external-licenses/third-party-licenses.rst.txt
docs-src/build/html/_sources/license-info/all-licenses.rst.txt
docs-src/build/html/_sources/license-info/licenses.rst.txt
docs-src/build/html/_sources/user-guide/user-guide.rst.txt
docs-src/build/html/_sources/user-guide-pages/axioms-overview.rst.txt
docs-src/build/html/_sources/user-guide-pages/axioms-tutorial.rst.txt
docs-src/build/html/_sources/user-guide-pages/cli-guide.rst.txt
docs-src/build/html/_sources/user-guide-pages/drawing-basics.rst.txt
docs-src/build/html/_sources/user-guide-pages/installation.rst.txt
docs-src/build/html/_sources/user-guide-pages/scripting.rst.txt
docs-src/build/html/_sphinx_design_static/design-tabs.js
docs-src/build/html/_sphinx_design_static/sphinx-design.min.css
docs-src/build/html/_static/basic.css
docs-src/build/html/_static/book
docs-src/build/html/_static/book.svg
docs-src/build/html/_static/custom.css
docs-src/build/html/_static/design-tabs.js
docs-src/build/html/_static/doctools.js
docs-src/build/html/_static/documentation_options.js
docs-src/build/html/_static/faq-end-start-arrows.png
docs-src/build/html/_static/file.png
docs-src/build/html/_static/good-output.png
docs-src/build/html/_static/h5p-resizer.js
docs-src/build/html/_static/language_data.js
docs-src/build/html/_static/logo
docs-src/build/html/_static/logo-dark.svg
docs-src/build/html/_static/logo-light.svg
docs-src/build/html/_static/logo.svg
docs-src/build/html/_static/logo.txt
docs-src/build/html/_static/minus.png
docs-src/build/html/_static/more.svg
docs-src/build/html/_static/plus.png
docs-src/build/html/_static/pygments.css
docs-src/build/html/_static/running_person.svg
docs-src/build/html/_static/searchtools.js
docs-src/build/html/_static/sphinx-design.min.css
docs-src/build/html/_static/sphinx_highlight.js
docs-src/build/html/_static/sphinx_iframe.css
docs-src/build/html/_static/video.svg
docs-src/build/html/_static/webpack-macros.html
docs-src/build/html/_static/scripts/bootstrap.js
docs-src/build/html/_static/scripts/bootstrap.js.LICENSE.txt
docs-src/build/html/_static/scripts/bootstrap.js.map
docs-src/build/html/_static/scripts/fontawesome.js
docs-src/build/html/_static/scripts/fontawesome.js.LICENSE.txt
docs-src/build/html/_static/scripts/fontawesome.js.map
docs-src/build/html/_static/scripts/pydata-sphinx-theme.js
docs-src/build/html/_static/scripts/pydata-sphinx-theme.js.map
docs-src/build/html/_static/styles/pydata-sphinx-theme.css
docs-src/build/html/_static/styles/pydata-sphinx-theme.css.map
docs-src/build/html/_static/styles/theme.css
docs-src/build/html/_static/vendor/fontawesome/webfonts/fa-brands-400.ttf
docs-src/build/html/_static/vendor/fontawesome/webfonts/fa-brands-400.woff2
docs-src/build/html/_static/vendor/fontawesome/webfonts/fa-regular-400.ttf
docs-src/build/html/_static/vendor/fontawesome/webfonts/fa-regular-400.woff2
docs-src/build/html/_static/vendor/fontawesome/webfonts/fa-solid-900.ttf
docs-src/build/html/_static/vendor/fontawesome/webfonts/fa-solid-900.woff2
docs-src/build/html/api-pages/cemento.axioms.html
docs-src/build/html/api-pages/cemento.axioms.modules.html
docs-src/build/html/api-pages/cemento.cli.html
docs-src/build/html/api-pages/cemento.draw_io.html
docs-src/build/html/api-pages/cemento.html
docs-src/build/html/api-pages/cemento.rdf.html
docs-src/build/html/api-pages/cemento.utils.html
docs-src/build/html/api-pages/modules.html
docs-src/build/html/external-licenses/licenses.html
docs-src/build/html/external-licenses/third-party-licenses.html
docs-src/build/html/license-info/all-licenses.html
docs-src/build/html/license-info/licenses.html
docs-src/build/html/user-guide/user-guide.html
docs-src/build/html/user-guide-pages/axioms-overview.html
docs-src/build/html/user-guide-pages/axioms-tutorial.html
docs-src/build/html/user-guide-pages/cli-guide.html
docs-src/build/html/user-guide-pages/drawing-basics.html
docs-src/build/html/user-guide-pages/installation.html
docs-src/build/html/user-guide-pages/scripting.html
docs-src/build/shtest/_sphinx_design_static/design-tabs.js
docs-src/build/shtest/_sphinx_design_static/sphinx-design.min.css
docs-src/build/shtest/_static/h5p-resizer.js
docs-src/build/shtest/_static/sphinx_iframe.css
docs-src/source/about.rst
docs-src/source/changelog.rst
docs-src/source/conf.py
docs-src/source/faqs.rst
docs-src/source/index.rst
docs-src/source/modules.rst
docs-src/source/quickstart.rst
docs-src/source/user-guide.rst
docs-src/source/_static/book.svg
docs-src/source/_static/custom.css
docs-src/source/_static/faq-end-start-arrows.png
docs-src/source/_static/good-output.png
docs-src/source/_static/logo-dark.svg
docs-src/source/_static/logo-light.svg
docs-src/source/_static/logo.svg
docs-src/source/_static/more.svg
docs-src/source/_static/running_person.svg
docs-src/source/_static/video.svg
docs-src/source/_templates/icon-attrib.html
docs-src/source/api-pages/cemento.axioms.modules.rst
docs-src/source/api-pages/cemento.axioms.rst
docs-src/source/api-pages/cemento.cli.rst
docs-src/source/api-pages/cemento.draw_io.rst
docs-src/source/api-pages/cemento.rdf.rst
docs-src/source/api-pages/cemento.rst
docs-src/source/api-pages/cemento.utils.rst
docs-src/source/api-pages/modules.rst
docs-src/source/license-info/all-licenses.rst
docs-src/source/license-info/licenses.rst
docs-src/source/user-guide-pages/axioms-overview.rst
docs-src/source/user-guide-pages/cli-guide.rst
docs-src/source/user-guide-pages/drawing-basics.rst
docs-src/source/user-guide-pages/installation.rst
docs-src/source/user-guide-pages/scripting.rst
docs/_images/book.svg
docs/_images/faq-end-start-arrows.png
docs/_images/good-output.png
docs/_images/logo-light.svg
docs/_images/logo.svg
docs/_images/more.svg
docs/_images/running_person.svg
docs/_images/video.svg
docs/_sources/about.rst.txt
docs/_sources/cemento.cli.rst.txt
docs/_sources/cemento.draw_io.rst.txt
docs/_sources/cemento.rdf.rst.txt
docs/_sources/cemento.rst.txt
docs/_sources/cemento.utils.rst.txt
docs/_sources/changelog.rst.txt
docs/_sources/faqs.rst.txt
docs/_sources/index.rst.txt
docs/_sources/licenses.rst.txt
docs/_sources/modules.rst.txt
docs/_sources/quickstart.rst.txt
docs/_sources/usage.rst.txt
docs/_sources/user-guide.rst.txt
docs/_sources/api-pages/cemento.axioms.modules.rst.txt
docs/_sources/api-pages/cemento.axioms.rst.txt
docs/_sources/api-pages/cemento.cli.rst.txt
docs/_sources/api-pages/cemento.draw_io.rst.txt
docs/_sources/api-pages/cemento.rdf.rst.txt
docs/_sources/api-pages/cemento.rst.txt
docs/_sources/api-pages/cemento.utils.rst.txt
docs/_sources/api-pages/modules.rst.txt
docs/_sources/external-licenses/licenses.rst.txt
docs/_sources/external-licenses/third-party-licenses.rst.txt
docs/_sources/license-info/all-licenses.rst.txt
docs/_sources/license-info/licenses.rst.txt
docs/_sources/user-guide/user-guide.rst.txt
docs/_sources/user-guide-pages/axioms-overview.rst.txt
docs/_sources/user-guide-pages/axioms-tutorial.rst.txt
docs/_sources/user-guide-pages/cli-guide.rst.txt
docs/_sources/user-guide-pages/drawing-basics.rst.txt
docs/_sources/user-guide-pages/installation.rst.txt
docs/_sources/user-guide-pages/scripting.rst.txt
docs/_sphinx_design_static/design-tabs.js
docs/_sphinx_design_static/sphinx-design.min.css
docs/_static/basic.css
docs/_static/book
docs/_static/book.svg
docs/_static/custom.css
docs/_static/design-tabs.js
docs/_static/doctools.js
docs/_static/documentation_options.js
docs/_static/faq-end-start-arrows.png
docs/_static/file.png
docs/_static/good-output.png
docs/_static/h5p-resizer.js
docs/_static/language_data.js
docs/_static/logo
docs/_static/logo-dark.svg
docs/_static/logo-light.svg
docs/_static/logo.svg
docs/_static/logo.txt
docs/_static/minus.png
docs/_static/more.svg
docs/_static/plus.png
docs/_static/pygments.css
docs/_static/running_person.svg
docs/_static/searchtools.js
docs/_static/sphinx-design.min.css
docs/_static/sphinx_highlight.js
docs/_static/sphinx_iframe.css
docs/_static/video.svg
docs/_static/webpack-macros.html
docs/_static/scripts/bootstrap.js
docs/_static/scripts/bootstrap.js.LICENSE.txt
docs/_static/scripts/bootstrap.js.map
docs/_static/scripts/fontawesome.js
docs/_static/scripts/fontawesome.js.LICENSE.txt
docs/_static/scripts/fontawesome.js.map
docs/_static/scripts/pydata-sphinx-theme.js
docs/_static/scripts/pydata-sphinx-theme.js.map
docs/_static/styles/pydata-sphinx-theme.css
docs/_static/styles/pydata-sphinx-theme.css.map
docs/_static/styles/theme.css
docs/_static/vendor/fontawesome/webfonts/fa-brands-400.ttf
docs/_static/vendor/fontawesome/webfonts/fa-brands-400.woff2
docs/_static/vendor/fontawesome/webfonts/fa-regular-400.ttf
docs/_static/vendor/fontawesome/webfonts/fa-regular-400.woff2
docs/_static/vendor/fontawesome/webfonts/fa-solid-900.ttf
docs/_static/vendor/fontawesome/webfonts/fa-solid-900.woff2
docs/api-pages/cemento.axioms.html
docs/api-pages/cemento.axioms.modules.html
docs/api-pages/cemento.cli.html
docs/api-pages/cemento.draw_io.html
docs/api-pages/cemento.html
docs/api-pages/cemento.rdf.html
docs/api-pages/cemento.utils.html
docs/api-pages/modules.html
docs/external-licenses/licenses.html
docs/external-licenses/third-party-licenses.html
docs/license-info/all-licenses.html
docs/license-info/licenses.html
docs/user-guide/user-guide.html
docs/user-guide-pages/axioms-overview.html
docs/user-guide-pages/axioms-tutorial.html
docs/user-guide-pages/cli-guide.html
docs/user-guide-pages/drawing-basics.html
docs/user-guide-pages/installation.html
docs/user-guide-pages/scripting.html
examples/ex_drawio_to_graph.py
examples/ex_drawio_to_ttl.py
examples/ex_graph_to_drawio.py
examples/ex_ttl_to_drawio.py
examples/happy-example-2.drawio
examples/happy-example.drawio
examples/happy-example.ttl
examples/prefixes.json
figures/bib-citation.bib
figures/do-not-input-this-happy-example-2-explainer.drawio
figures/do-not-input-this-happy-example-explainer.drawio
figures/happy-example-2-explainer.drawio.svg
figures/happy-example-explainer.drawio.svg
figures/logo.svg
figures/zotero-rdf-citation.rdf
tests/pytest.ini
tests/test_diagram_errors.py
tests/test_read_diagram.py
tests/scripts/generate_json_read_output.py
tests/test_files/diagram-error-01.drawio
tests/test_files/diagram-error-02.drawio
tests/test_files/diagram-error-03.drawio
tests/test_files/diagram-error-04.drawio
tests/test_files/diagram-error-05.drawio
tests/test_files/diagram-error-06.drawio
tests/test_files/diagram-error-07.drawio
tests/test_files/diagram-error-08.drawio
tests/test_files/diagram-error-09.drawio
tests/test_files/diagram-error-10.drawio
tests/test_files/diagram-error-11.drawio
tests/test_files/read-diagram-01.drawio
tests/test_files/read-diagram-02.drawio
tests/test_files/read-diagram-03.drawio
tests/test_files/read-diagram-04.drawio
tests/test_files/read-diagram-05.drawio
tests/test_files/read-diagram-06.drawio
tests/test_refs/prefixes.json
tests/test_refs/read-diagram-02.json
tests/test_refs/read-diagram-03.json
tests/test_refs/read-diagram-03.ttl
tests/test_refs/read-diagram-04.ttl