.gitignore
CHANGELOG.md
CITATION.cff
Dockerfile
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
celltypist/__init__.py
celltypist/annotate.py
celltypist/classifier.py
celltypist/command_line.py
celltypist/logger.py
celltypist/models.py
celltypist/plot.py
celltypist/samples.py
celltypist/train.py
celltypist.egg-info/PKG-INFO
celltypist.egg-info/SOURCES.txt
celltypist.egg-info/dependency_links.txt
celltypist.egg-info/entry_points.txt
celltypist.egg-info/requires.txt
celltypist.egg-info/top_level.txt
celltypist/contro/__init__.py
celltypist/contro/align.py
celltypist/contro/distance.py
celltypist/contro/distances.py
celltypist/contro/harmonize.py
celltypist/contro/integrate.py
celltypist/contro/pct.py
celltypist/contro/plot.py
celltypist/contro/symbols.py
celltypist/data/samples/Ensembl105_Human2Mouse_Genes.csv
celltypist/data/samples/sample_cell_by_gene.csv
docs/Makefile
docs/requirements.txt
docs/notebook/celltypist_tutorial.ipynb
docs/notebook/celltypist_tutorial_cv.ipynb
docs/notebook/celltypist_tutorial_harmonisation.ipynb
docs/notebook/celltypist_tutorial_integration.ipynb
docs/notebook/celltypist_tutorial_ml.ipynb
docs/source/celltypist.annotate.rst
docs/source/celltypist.classifier.AnnotationResult.rst
docs/source/celltypist.classifier.Classifier.rst
docs/source/celltypist.contro.align.DistanceAlignment.rst
docs/source/celltypist.contro.distance.Distance.rst
docs/source/celltypist.contro.pct.PredictiveClusteringTree.rst
docs/source/celltypist.dotplot.rst
docs/source/celltypist.harmonize.rst
docs/source/celltypist.integrate.rst
docs/source/celltypist.models.Model.rst
docs/source/celltypist.models.download_models.rst
docs/source/celltypist.samples.downsample_adata.rst
docs/source/celltypist.sankeyplot.rst
docs/source/celltypist.train.rst
docs/source/celltypist.treeplot.rst
docs/source/conf.py
docs/source/index.rst
docs/source/notebook
docs/source/_static/img/logo_celltypist.png