Metadata-Version: 2.1
Name: cellreel
Version: 0.1.0
Summary: graphical user interface for refractive index and "         + fluorescence tomography
Home-page: https://github.com/RI-imaging/CellReel
Author: Paul Müller
Author-email: dev@craban.de
License: GPL v3
Keywords: digital holographic microscopy,tomography,diffraction tomography,fluorescence tomography,quantitative phase imaging,refractive index
Platform: ALL
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Intended Audience :: Science/Research
Requires-Python: >=3.6, <4
Requires-Dist: appdirs
Requires-Dist: cellsino (>=0.4.0)
Requires-Dist: flimage
Requires-Dist: h5py (>=2.7)
Requires-Dist: imageio[ffmpeg] (>=2.5matplotlib>=3.0)
Requires-Dist: numpy
Requires-Dist: odtbrain (>=0.4.0)
Requires-Dist: pyqt5
Requires-Dist: pyqtgraph (==0.12.1)
Requires-Dist: qpformat (>=0.10.8)
Requires-Dist: qpimage (>=0.5.2)
Requires-Dist: radontea (>=0.4.1)
Requires-Dist: scikit-image (>=0.11.0)
Requires-Dist: tifffile

CellReel
========

|PyPI Version| |Tests Status| |Coverage Status| |Docs Status|


**CellReel** is a graphical user interface for performing fluorescence and
refractive index tomography of biological samples, particularly
if the acquired data must be aligned temporarily and spatially
post-measurement.


Documentation
-------------

The documentation, including the code reference and examples, is available at
`cellreel.readthedocs.io <https://cellreel.readthedocs.io/en/stable/>`__.


Installation
------------

::

    pip install cellreel


Testing
-------

::

    pip install -e .
    pip install pytest pytest-qt
    pytest tests


.. |PyPI Version| image:: https://img.shields.io/pypi/v/cellreel.svg
   :target: https://pypi.python.org/pypi/cellreel
.. |Tests Status| image:: https://img.shields.io/github/workflow/status/RI-Imaging/cellreel/Checks
   :target: https://github.com/RI-Imaging/cellreel/actions?query=workflow%3AChecks
.. |Coverage Status| image:: https://img.shields.io/codecov/c/github/RI-imaging/cellreel/master.svg
   :target: https://codecov.io/gh/RI-imaging/cellreel
.. |Docs Status| image:: https://readthedocs.org/projects/cellreel/badge/?version=latest
   :target: https://readthedocs.org/projects/cellreel/builds/



