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README.rst
pyproject.toml
requirements.txt
setup.py
tox.ini
vendorize.toml
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cellrank/__init__.py
cellrank.egg-info/PKG-INFO
cellrank.egg-info/SOURCES.txt
cellrank.egg-info/dependency_links.txt
cellrank.egg-info/not-zip-safe
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cellrank/datasets/__init__.py
cellrank/datasets/_datasets.py
cellrank/logging/__init__.py
cellrank/logging/_logging.py
cellrank/plotting/__init__.py
cellrank/plotting/_cluster_fates.py
cellrank/plotting/_cluster_lineages.py
cellrank/plotting/_gene_trend.py
cellrank/plotting/_graph.py
cellrank/plotting/_heatmap.py
cellrank/plotting/_utils.py
cellrank/tools/__init__.py
cellrank/tools/_colors.py
cellrank/tools/_constants.py
cellrank/tools/_exact_mc_test.py
cellrank/tools/_gene_importance.py
cellrank/tools/_lineage.py
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cellrank/tools/_read.py
cellrank/tools/_root_final.py
cellrank/tools/_transition_matrix.py
cellrank/tools/_utils.py
cellrank/tools/estimators/__init__.py
cellrank/tools/estimators/_base_estimator.py
cellrank/tools/estimators/_cflare.py
cellrank/tools/estimators/_gppca.py
cellrank/tools/kernels/__init__.py
cellrank/tools/kernels/_kernel.py
cellrank/utils/__init__.py
cellrank/utils/_docs.py
cellrank/utils/_parallelize.py
cellrank/utils/_utils.py
cellrank/utils/models/__init__.py
cellrank/utils/models/_models.py
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docs/requirements.txt
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docs/source/benchmarks.rst
docs/source/classes.rst
docs/source/conf.py
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docs/source/release_notes.rst
docs/source/_ext/edit_on_github.py
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docs/source/_templates/autosummary/base.rst
docs/source/_templates/autosummary/class.rst
resources/images/cellrank_fate_map.png
resources/images/cluster_fates.png
resources/images/cluster_lineage.png
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resources/images/graph.png
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tests/_helpers.py
tests/conftest.py
tests/test_cflare.py
tests/test_colors.py
tests/test_gpcca.py
tests/test_kernels.py
tests/test_lineage.py
tests/test_model.py
tests/test_pipeline.py
tests/test_plotting.py
tests/test_read.py
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