MANIFEST.in
README.md
ppi-resources.md
setup.py
CellPhoneDB.egg-info/PKG-INFO
CellPhoneDB.egg-info/SOURCES.txt
CellPhoneDB.egg-info/dependency_links.txt
CellPhoneDB.egg-info/entry_points.txt
CellPhoneDB.egg-info/not-zip-safe
CellPhoneDB.egg-info/requires.txt
CellPhoneDB.egg-info/top_level.txt
cellphonedb/__init__.py
cellphonedb/cellphonedb_cli.py
cellphonedb/src/__init__.py
cellphonedb/src/api_endpoints/__init__.py
cellphonedb/src/api_endpoints/terminal_api/__init__.py
cellphonedb/src/api_endpoints/terminal_api/database_terminal_api_endpoints/__init__.py
cellphonedb/src/api_endpoints/terminal_api/database_terminal_api_endpoints/database_terminal_commands.py
cellphonedb/src/api_endpoints/terminal_api/method_terminal_api_endpoints/__init__.py
cellphonedb/src/api_endpoints/terminal_api/method_terminal_api_endpoints/method_terminal_commands.py
cellphonedb/src/api_endpoints/terminal_api/plot_terminal_api_endpoints/__init__.py
cellphonedb/src/api_endpoints/terminal_api/plot_terminal_api_endpoints/plot_terminal_commands.py
cellphonedb/src/api_endpoints/terminal_api/query_terminal_api_endpoints/__init__.py
cellphonedb/src/api_endpoints/terminal_api/query_terminal_api_endpoints/query_terminal_commands.py
cellphonedb/src/api_endpoints/terminal_api/tools_terminal_api_endpoints/__init__.py
cellphonedb/src/api_endpoints/terminal_api/tools_terminal_api_endpoints/tools_terminal_commands.py
cellphonedb/src/api_endpoints/terminal_api/util/__init__.py
cellphonedb/src/api_endpoints/terminal_api/util/choose_database.py
cellphonedb/src/api_endpoints/web_api/__init__.py
cellphonedb/src/api_endpoints/web_api/routes.py
cellphonedb/src/api_endpoints/web_api/web_api_endpoint_base.py
cellphonedb/src/api_endpoints/web_api/query_web_api_endpoints/__init__.py
cellphonedb/src/api_endpoints/web_api/query_web_api_endpoints/query_web_api_routes.py
cellphonedb/src/api_endpoints/web_api/query_web_api_endpoints/web_endpoint_query_autocomplete.py
cellphonedb/src/api_endpoints/web_api/query_web_api_endpoints/web_endpoint_query_database.py
cellphonedb/src/api_endpoints/web_api/query_web_api_endpoints/web_endpoint_query_find_interactions_by_element.py
cellphonedb/src/api_endpoints/web_api/query_web_api_endpoints/complex/__init__.py
cellphonedb/src/api_endpoints/web_api/query_web_api_endpoints/complex/query_complex_web_api_routes.py
cellphonedb/src/api_endpoints/web_api/query_web_api_endpoints/complex/web_endpoint_query_complex_deconvoluted.py
cellphonedb/src/api_endpoints/web_api/query_web_api_endpoints/interaction/__init__.py
cellphonedb/src/api_endpoints/web_api/query_web_api_endpoints/interaction/query_interaction_web_api_routes.py
cellphonedb/src/api_endpoints/web_api/query_web_api_endpoints/interaction/web_endpoint_query_interaction_gene.py
cellphonedb/src/app/__init__.py
cellphonedb/src/app/app_config.py
cellphonedb/src/app/app_logger.py
cellphonedb/src/app/cellphonedb_app.py
cellphonedb/src/app/cpdb_app.py
cellphonedb/src/app/config/base_config.yml
cellphonedb/src/app/config/core.yml
cellphonedb/src/app/config/docker_test.yml
cellphonedb/src/app/config/postgres_local.yml
cellphonedb/src/app/config/test.yml
cellphonedb/src/app/flask/__init__.py
cellphonedb/src/app/flask/flask_app.py
cellphonedb/src/app/flask/flask_cellphonedb.py
cellphonedb/src/core/Cellphonedb.py
cellphonedb/src/core/CellphonedbSqlalchemy.py
cellphonedb/src/core/__init__.py
cellphonedb/src/core/cellphone.db
cellphonedb/src/core/core_logger.py
cellphonedb/src/core/metadata.json
cellphonedb/src/core/collectors/__init__.py
cellphonedb/src/core/collectors/collector.py
cellphonedb/src/core/collectors/complex_preprocess_collector.py
cellphonedb/src/core/collectors/gene_preprocess_collector.py
cellphonedb/src/core/collectors/interaction_preprocess_collector.py
cellphonedb/src/core/collectors/protein_preprocess_collector.py
cellphonedb/src/core/data/complex_input.csv
cellphonedb/src/core/data/gene_input.csv
cellphonedb/src/core/data/interaction_input.csv
cellphonedb/src/core/data/protein_input.csv
cellphonedb/src/core/data/sources/I2D_interaction_raw.csv.xz
cellphonedb/src/core/data/sources/IMEx_interaction_raw.csv.xz
cellphonedb/src/core/data/sources/InnateDB-All_interaction_raw.csv.xz
cellphonedb/src/core/data/sources/InnateDB_interaction_raw.csv.xz
cellphonedb/src/core/data/sources/IntAct_interaction_raw.csv.xz
cellphonedb/src/core/data/sources/MBInfo_interaction_raw.csv.xz
cellphonedb/src/core/data/sources/MINT_interaction_raw.csv.xz
cellphonedb/src/core/data/sources/MatrixDB_interaction_raw.csv.xz
cellphonedb/src/core/data/sources/UniProt_interaction_raw.csv.xz
cellphonedb/src/core/data/sources/bhf-ucl_interaction_raw.csv.xz
cellphonedb/src/core/data/sources/complex_curated.csv
cellphonedb/src/core/data/sources/ensembl.txt
cellphonedb/src/core/data/sources/excluded_interaction.csv
cellphonedb/src/core/data/sources/hla_curated.csv
cellphonedb/src/core/data/sources/interaction_curated.csv
cellphonedb/src/core/data/sources/iuphar_interaction_raw.csv.xz
cellphonedb/src/core/data/sources/protein_curated.csv
cellphonedb/src/core/data/sources/uniprot.tab
cellphonedb/src/core/database/Database.py
cellphonedb/src/core/database/DatabaseManager.py
cellphonedb/src/core/database/Repository.py
cellphonedb/src/core/database/__init__.py
cellphonedb/src/core/database/sqlalchemy_models/__init__.py
cellphonedb/src/core/database/sqlalchemy_models/db_model_complex.py
cellphonedb/src/core/database/sqlalchemy_models/db_model_complex_composition.py
cellphonedb/src/core/database/sqlalchemy_models/db_model_gene.py
cellphonedb/src/core/database/sqlalchemy_models/db_model_interaction.py
cellphonedb/src/core/database/sqlalchemy_models/db_model_multidata.py
cellphonedb/src/core/database/sqlalchemy_models/db_model_protein.py
cellphonedb/src/core/database/sqlalchemy_repository/ComplexRepository.py
cellphonedb/src/core/database/sqlalchemy_repository/GeneRepository.py
cellphonedb/src/core/database/sqlalchemy_repository/InteractionRepository.py
cellphonedb/src/core/database/sqlalchemy_repository/MultidataRepository.py
cellphonedb/src/core/database/sqlalchemy_repository/ProteinRepository.py
cellphonedb/src/core/database/sqlalchemy_repository/__init__.py
cellphonedb/src/core/exceptions/AllCountsFilteredException.py
cellphonedb/src/core/exceptions/EmptyResultException.py
cellphonedb/src/core/exceptions/NoComplexException.py
cellphonedb/src/core/exceptions/NoInteractionsFound.py
cellphonedb/src/core/exceptions/ProcessMetaException.py
cellphonedb/src/core/exceptions/ThresholdValueException.py
cellphonedb/src/core/exceptions/__init__.py
cellphonedb/src/core/exporters/__init__.py
cellphonedb/src/core/exporters/complex_exporter.py
cellphonedb/src/core/exporters/exporterlauncher.py
cellphonedb/src/core/exporters/gene_exporter.py
cellphonedb/src/core/exporters/interaction_exporter.py
cellphonedb/src/core/exporters/protein_complex_cellphonedb.py
cellphonedb/src/core/exporters/protein_exporter.py
cellphonedb/src/core/generators/__init__.py
cellphonedb/src/core/generators/complex_generator.py
cellphonedb/src/core/generators/gene_generator.py
cellphonedb/src/core/generators/generator_helper.py
cellphonedb/src/core/generators/protein_generator.py
cellphonedb/src/core/methods/__init__.py
cellphonedb/src/core/methods/cpdb_analysis_complex_method.py
cellphonedb/src/core/methods/cpdb_analysis_helper.py
cellphonedb/src/core/methods/cpdb_analysis_method.py
cellphonedb/src/core/methods/cpdb_statistical_analysis_complex_method.py
cellphonedb/src/core/methods/cpdb_statistical_analysis_helper.py
cellphonedb/src/core/methods/cpdb_statistical_analysis_method.py
cellphonedb/src/core/methods/method_launcher.py
cellphonedb/src/core/methods/method_utils.py
cellphonedb/src/core/models/__init__.py
cellphonedb/src/core/models/cluster_counts/__init__.py
cellphonedb/src/core/models/cluster_counts/cluster_counts_filter.py
cellphonedb/src/core/models/cluster_counts/cluster_counts_helper.py
cellphonedb/src/core/models/complex/__init__.py
cellphonedb/src/core/models/complex/complex_helper.py
cellphonedb/src/core/models/interaction/__init__.py
cellphonedb/src/core/models/interaction/interaction_filter.py
cellphonedb/src/core/models/interaction/interaction_helper.py
cellphonedb/src/core/models/interaction/interaction_properties.py
cellphonedb/src/core/models/multidata/__init__.py
cellphonedb/src/core/models/multidata/multidata_helper.py
cellphonedb/src/core/models/multidata/multidata_properties.py
cellphonedb/src/core/preprocessors/__init__.py
cellphonedb/src/core/preprocessors/method_preprocessors.py
cellphonedb/src/core/queries/__init__.py
cellphonedb/src/core/queries/autocomplete_queries.py
cellphonedb/src/core/queries/query_launcher.py
cellphonedb/src/core/queries/complex/__init__.py
cellphonedb/src/core/queries/complex/complex_deconvoluted.py
cellphonedb/src/core/queries/interaction/__init__.py
cellphonedb/src/core/queries/interaction/interactions_by_element.py
cellphonedb/src/core/tests/__init__.py
cellphonedb/src/core/tests/models/__init__.py
cellphonedb/src/core/tests/models/test_helper_complex.py
cellphonedb/src/core/tests/models/test_interaction_filters.py
cellphonedb/src/core/tests/models/test_properties_multidata.py
cellphonedb/src/core/tests/models/cluster_counts/__init__.py
cellphonedb/src/core/tests/models/cluster_counts/test_filter_cluster_counts.py
cellphonedb/src/core/tests/preprocessors_tests/__init__.py
cellphonedb/src/core/tests/preprocessors_tests/test_method_preprocessors.py
cellphonedb/src/core/tests/queries/__init__.py
cellphonedb/src/core/tests/queries/test_autocomplete_queries.py
cellphonedb/src/core/utils/__init__.py
cellphonedb/src/core/utils/filters.py
cellphonedb/src/core/utils/subsampler.py
cellphonedb/src/database/__init__.py
cellphonedb/src/database/manager/DatabaseVersionManager.py
cellphonedb/src/database/manager/__init__.py
cellphonedb/src/exceptions/MissingPlotterFunctionException.py
cellphonedb/src/exceptions/MissingR.py
cellphonedb/src/exceptions/MissingRequiredColumns.py
cellphonedb/src/exceptions/NoReleasesException.py
cellphonedb/src/exceptions/NotADataFrameException.py
cellphonedb/src/exceptions/ParseCountsException.py
cellphonedb/src/exceptions/ParseMetaException.py
cellphonedb/src/exceptions/PlotException.py
cellphonedb/src/exceptions/RRuntimeException.py
cellphonedb/src/exceptions/ReadFileException.py
cellphonedb/src/exceptions/ReadFromPickleException.py
cellphonedb/src/exceptions/__init__.py
cellphonedb/src/local_launchers/__init__.py
cellphonedb/src/local_launchers/launcher_utils.py
cellphonedb/src/local_launchers/local_collector_launcher.py
cellphonedb/src/local_launchers/local_exporter_launcher.py
cellphonedb/src/local_launchers/local_method_launcher.py
cellphonedb/src/local_launchers/local_query_launcher.py
cellphonedb/src/plotters/__init__.py
cellphonedb/src/plotters/r_plotter.py
cellphonedb/src/plotters/R/plot_dot_by_column_name.R
cellphonedb/src/plotters/R/plot_heatmaps.R
cellphonedb/src/tests/__init__.py
cellphonedb/src/tests/cellphone_flask_test_case.py
cellphonedb/src/tests/test_collection_calls.py
cellphonedb/src/tests/test_database.py
cellphonedb/src/tests/test_exporter_calls.py
cellphonedb/src/tests/methods/__init__.py
cellphonedb/src/tests/methods/test_terminal_method_analysis.py
cellphonedb/src/tests/methods/test_terminal_method_statistical_analysis.py
cellphonedb/src/tests/plots/__init__.py
cellphonedb/src/tests/plots/test_plots.py
cellphonedb/src/tests/queries/__init__.py
cellphonedb/src/tests/queries/test_terminal_query_interaction_calls.py
cellphonedb/src/tests/queries/test_web_api_query_interaction_calls.py
cellphonedb/src/tests/test_validators/__init__.py
cellphonedb/src/tests/test_validators/test_database_relations.py
cellphonedb/src/tests/test_validators/test_validator_database_number_of_entries.py
cellphonedb/src/tests/test_validators/test_validator_database_random_entries.py
cellphonedb/tools/__init__.py
cellphonedb/tools/app.py
cellphonedb/tools/interactions_helper.py
cellphonedb/tools/tools_helper.py
cellphonedb/tools/actions/__init__.py
cellphonedb/tools/actions/gene_actions.py
cellphonedb/tools/generate_data/__init__.py
cellphonedb/tools/generate_data/filters/__init__.py
cellphonedb/tools/generate_data/filters/non_complex_interactions.py
cellphonedb/tools/generate_data/filters/remove_genes.py
cellphonedb/tools/generate_data/filters/remove_interactions.py
cellphonedb/tools/generate_data/getters/__init__.py
cellphonedb/tools/generate_data/getters/get_imex.py
cellphonedb/tools/generate_data/getters/get_iuphar.py
cellphonedb/tools/generate_data/mergers/__init__.py
cellphonedb/tools/generate_data/mergers/add_curated.py
cellphonedb/tools/generate_data/mergers/merge_interactions.py
cellphonedb/tools/generate_data/mergers/mergers_genes.py
cellphonedb/tools/generate_data/parsers/__init__.py
cellphonedb/tools/generate_data/parsers/parse_interactions_imex.py
cellphonedb/tools/generate_data/parsers/parse_iuphar_guidetopharmacology.py
cellphonedb/tools/validators/__init__.py
cellphonedb/tools/validators/gene_validators.py
cellphonedb/utils/__init__.py
cellphonedb/utils/dataframe_format.py
cellphonedb/utils/dataframe_functions.py
cellphonedb/utils/unique_id_generator.py
cellphonedb/utils/utils.py
cellphonedb/utils/tests/__init__.py
cellphonedb/utils/tests/test_dataframe_same_data.py
cellphonedb/utils/tests/test_open_data_file.py