AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
pyproject.toml
setup.cfg
setup.py
cellmaps_generate_hierarchy/__init__.py
cellmaps_generate_hierarchy/cellmaps_generate_hierarchycmd.py
cellmaps_generate_hierarchy/exceptions.py
cellmaps_generate_hierarchy/hcx.py
cellmaps_generate_hierarchy/hierarchy.py
cellmaps_generate_hierarchy/hierarchy_style.cx2
cellmaps_generate_hierarchy/interactome_style.cx2
cellmaps_generate_hierarchy/interactome_style_with_bait.cx2
cellmaps_generate_hierarchy/layout.py
cellmaps_generate_hierarchy/maturehierarchy.py
cellmaps_generate_hierarchy/ndexupload.py
cellmaps_generate_hierarchy/ppi.py
cellmaps_generate_hierarchy/readme_outputs.txt
cellmaps_generate_hierarchy/runner.py
cellmaps_generate_hierarchy.egg-info/PKG-INFO
cellmaps_generate_hierarchy.egg-info/SOURCES.txt
cellmaps_generate_hierarchy.egg-info/dependency_links.txt
cellmaps_generate_hierarchy.egg-info/not-zip-safe
cellmaps_generate_hierarchy.egg-info/requires.txt
cellmaps_generate_hierarchy.egg-info/top_level.txt
docs/Makefile
docs/authors.rst
docs/cellmaps_generate_hierarchy.rst
docs/conf.py
docs/contributing.rst
docs/devbranches.rst
docs/developer.rst
docs/history.rst
docs/index.rst
docs/inputs.rst
docs/installation.rst
docs/integrationtesting.rst
docs/make.bat
docs/modules.rst
docs/newrelease.rst
docs/outputs.rst
docs/pypircfile.rst
docs/usage.rst
docs/versioningscheme.rst
docs/_build/html/_images/generate_hierarchy_overview.png
docs/_build/html/_static/file.png
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
docs/images/generate_hierarchy_overview.png
tests/.DS_Store
tests/__init__.py
tests/test_cdapshierarchygenerator.py
tests/test_cellmaps_generate_hierarchycmd.py
tests/test_cellmapsgeneratehierarchy.py
tests/test_cosinesimilarityppigenerator.py
tests/test_cytoscapejsbreadthfirstlayout.py
tests/test_hcxhierarchy.py
tests/test_integration_cellmaps_generate_hierarchy.py
tests/test_maturehierarchy.py
tests/data/.DS_Store
tests/data/fake_4_node_coembedding.tsv
tests/data/hidef_output.edges
tests/data/hidef_output.nodes
tests/data/test_password