.gitignore
CITATION.cff
LICENSE
MANIFEST.in
README.md
pyproject.toml
.github/workflows/test_and_deploy.yml
.github/workflows/test_include_guard.yaml
.napari/config.yml
cellfinder/__init__.py
cellfinder/cli_migration_warning.py
cellfinder.egg-info/PKG-INFO
cellfinder.egg-info/SOURCES.txt
cellfinder.egg-info/dependency_links.txt
cellfinder.egg-info/entry_points.txt
cellfinder.egg-info/requires.txt
cellfinder.egg-info/top_level.txt
cellfinder/core/__init__.py
cellfinder/core/main.py
cellfinder/core/types.py
cellfinder/core/classify/__init__.py
cellfinder/core/classify/augment.py
cellfinder/core/classify/classify.py
cellfinder/core/classify/cube_generator.py
cellfinder/core/classify/resnet.py
cellfinder/core/classify/tools.py
cellfinder/core/config/__init__.py
cellfinder/core/config/cellfinder.conf
cellfinder/core/detect/__init__.py
cellfinder/core/detect/detect.py
cellfinder/core/detect/filters/__init__.py
cellfinder/core/detect/filters/setup_filters.py
cellfinder/core/detect/filters/plane/__init__.py
cellfinder/core/detect/filters/plane/classical_filter.py
cellfinder/core/detect/filters/plane/plane_filter.py
cellfinder/core/detect/filters/plane/tile_walker.py
cellfinder/core/detect/filters/volume/__init__.py
cellfinder/core/detect/filters/volume/ball_filter.py
cellfinder/core/detect/filters/volume/structure_detection.py
cellfinder/core/detect/filters/volume/structure_splitting.py
cellfinder/core/detect/filters/volume/volume_filter.py
cellfinder/core/download/__init__.py
cellfinder/core/download/cli.py
cellfinder/core/download/download.py
cellfinder/core/download/models.py
cellfinder/core/tools/IO.py
cellfinder/core/tools/__init__.py
cellfinder/core/tools/array_operations.py
cellfinder/core/tools/geometry.py
cellfinder/core/tools/image_processing.py
cellfinder/core/tools/prep.py
cellfinder/core/tools/source_files.py
cellfinder/core/tools/system.py
cellfinder/core/tools/tf.py
cellfinder/core/tools/tiff.py
cellfinder/core/tools/tools.py
cellfinder/core/train/__init__.py
cellfinder/core/train/train_yml.py
cellfinder/napari/__init__.py
cellfinder/napari/curation.py
cellfinder/napari/input_container.py
cellfinder/napari/napari.yaml
cellfinder/napari/sample_data.py
cellfinder/napari/utils.py
cellfinder/napari/detect/__init__.py
cellfinder/napari/detect/detect.py
cellfinder/napari/detect/detect_containers.py
cellfinder/napari/detect/thread_worker.py
cellfinder/napari/images/brainglobe.png
cellfinder/napari/train/__init__.py
cellfinder/napari/train/train.py
cellfinder/napari/train/train_containers.py