MANIFEST.in
README.md
setup.py
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cellfinder/__init__.py
cellfinder/main.py
cellfinder.egg-info/PKG-INFO
cellfinder.egg-info/SOURCES.txt
cellfinder.egg-info/dependency_links.txt
cellfinder.egg-info/entry_points.txt
cellfinder.egg-info/not-zip-safe
cellfinder.egg-info/requires.txt
cellfinder.egg-info/top_level.txt
cellfinder/analyse/__init__.py
cellfinder/analyse/group/__init__.py
cellfinder/analyse/group/region_summary.py
cellfinder/classify/__init__.py
cellfinder/classify/augment.py
cellfinder/classify/classify.py
cellfinder/classify/cube_generator.py
cellfinder/classify/resnet.py
cellfinder/classify/tools.py
cellfinder/config/__init__.py
cellfinder/config/cellfinder.conf
cellfinder/detect/__init__.py
cellfinder/detect/detect.py
cellfinder/detect/filters/__init__.py
cellfinder/detect/filters/setup_filters.py
cellfinder/detect/filters/typedefs.pxd
cellfinder/detect/filters/plane_filters/__init__.py
cellfinder/detect/filters/plane_filters/base_tile_filter.cpp
cellfinder/detect/filters/plane_filters/classical_filter.py
cellfinder/detect/filters/plane_filters/multiprocessing.py
cellfinder/detect/filters/plane_filters/tile_walker.py
cellfinder/detect/filters/volume_filters/__init__.py
cellfinder/detect/filters/volume_filters/ball_filter.c
cellfinder/detect/filters/volume_filters/multiprocessing.py
cellfinder/detect/filters/volume_filters/structure_detection.cpp
cellfinder/detect/filters/volume_filters/structure_splitting.py
cellfinder/download/__init__.py
cellfinder/download/cli.py
cellfinder/download/download.py
cellfinder/download/models.py
cellfinder/extract/__init__.py
cellfinder/extract/extract_cubes.py
cellfinder/figures/__init__.py
cellfinder/figures/cli.py
cellfinder/figures/figures.py
cellfinder/standard_space/__init__.py
cellfinder/standard_space/cells_to_standard_space.py
cellfinder/summarise/__init__.py
cellfinder/summarise/count_summary.py
cellfinder/tools/__init__.py
cellfinder/tools/array_operations.py
cellfinder/tools/geometry.py
cellfinder/tools/image_processing.py
cellfinder/tools/parser.py
cellfinder/tools/prep.py
cellfinder/tools/system.py
cellfinder/tools/tf.py
cellfinder/tools/tiff.py
cellfinder/tools/tools.py
cellfinder/train/__init__.py
cellfinder/train/curation.py
cellfinder/train/train_yml.py
cellfinder/utils/__init__.py
cellfinder/utils/xml_crop.py
cellfinder/utils/xml_scale.py
cellfinder/viewer/__init__.py
cellfinder/viewer/two_dimensional.py
tests/data/config/__init__.py
tests/tests/conftest.py
tests/tests/test_integration/test_detection.py
tests/tests/test_integration/test_extract.py
tests/tests/test_integration/test_registration.py
tests/tests/test_integration/test_train.py
tests/tests/test_integration/test_utils/test_xml_scale.py
tests/tests/test_unit/test_analyse/test_group/test_region_summary.py
tests/tests/test_unit/test_detect/test_filters/test_volume_filters/test_structure_detection.py
tests/tests/test_unit/test_tools/test_geometry.py
tests/tests/test_unit/test_tools/test_image_processing.py
tests/tests/test_unit/test_tools/test_prep.py
tests/tests/test_unit/test_tools/test_system.py
tests/tests/test_unit/test_tools/test_tools_general.py