.codecov.yml
.gitignore
.pre-commit-config.yaml
CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
tox.ini
.github/workflows/test_and_deploy.yml
.github/workflows/test_numba_off.yml
benchmarks/README.md
benchmarks/detect_and_classify.py
benchmarks/filter_2d.py
benchmarks/filter_3d.py
src/cellfinder_core/__init__.py
src/cellfinder_core/main.py
src/cellfinder_core/types.py
src/cellfinder_core.egg-info/PKG-INFO
src/cellfinder_core.egg-info/SOURCES.txt
src/cellfinder_core.egg-info/dependency_links.txt
src/cellfinder_core.egg-info/entry_points.txt
src/cellfinder_core.egg-info/requires.txt
src/cellfinder_core.egg-info/top_level.txt
src/cellfinder_core/classify/__init__.py
src/cellfinder_core/classify/augment.py
src/cellfinder_core/classify/classify.py
src/cellfinder_core/classify/cube_generator.py
src/cellfinder_core/classify/resnet.py
src/cellfinder_core/classify/tools.py
src/cellfinder_core/config/__init__.py
src/cellfinder_core/config/cellfinder.conf
src/cellfinder_core/detect/__init__.py
src/cellfinder_core/detect/detect.py
src/cellfinder_core/detect/filters/__init__.py
src/cellfinder_core/detect/filters/setup_filters.py
src/cellfinder_core/detect/filters/plane/__init__.py
src/cellfinder_core/detect/filters/plane/classical_filter.py
src/cellfinder_core/detect/filters/plane/plane_filter.py
src/cellfinder_core/detect/filters/plane/tile_walker.py
src/cellfinder_core/detect/filters/volume/__init__.py
src/cellfinder_core/detect/filters/volume/ball_filter.py
src/cellfinder_core/detect/filters/volume/structure_detection.py
src/cellfinder_core/detect/filters/volume/structure_splitting.py
src/cellfinder_core/detect/filters/volume/volume_filter.py
src/cellfinder_core/download/__init__.py
src/cellfinder_core/download/cli.py
src/cellfinder_core/download/download.py
src/cellfinder_core/download/models.py
src/cellfinder_core/tools/IO.py
src/cellfinder_core/tools/__init__.py
src/cellfinder_core/tools/array_operations.py
src/cellfinder_core/tools/geometry.py
src/cellfinder_core/tools/image_processing.py
src/cellfinder_core/tools/prep.py
src/cellfinder_core/tools/source_files.py
src/cellfinder_core/tools/system.py
src/cellfinder_core/tools/tf.py
src/cellfinder_core/tools/tiff.py
src/cellfinder_core/tools/tools.py
src/cellfinder_core/train/__init__.py
src/cellfinder_core/train/train_yml.py
tests/__init__.py
tests/tests/__init__.py
tests/tests/conftest.py
tests/tests/test_integration/__init__.py
tests/tests/test_integration/test_detection.py
tests/tests/test_integration/test_detection_structure_splitting.py
tests/tests/test_integration/test_train.py
tests/tests/test_unit/__init__.py
tests/tests/test_unit/test_detect/__init__.py
tests/tests/test_unit/test_detect/test_detect.py
tests/tests/test_unit/test_detect/test_filters/test_volume_filters/__init__.py
tests/tests/test_unit/test_detect/test_filters/test_volume_filters/test_structure_detection.py
tests/tests/test_unit/test_tools/__init__.py
tests/tests/test_unit/test_tools/test_IO.py
tests/tests/test_unit/test_tools/test_geometry.py
tests/tests/test_unit/test_tools/test_image_processing.py
tests/tests/test_unit/test_tools/test_system.py
tests/tests/test_unit/test_tools/test_tools_general.py