"""Module for performing neighborhood analysis."""

from .alpha_shapes import alpha_shape, alpha_shape_cell_clusters, filter_alpha_shapes
from .gradient import calc_grad_nbhd_from_roi
from .hextile import generate_hextile, hextile_niche
from .neighborhoods import (
    NBHD,
    calc_nbhd_bordering,
    calc_nbhd_by_gene,
    calc_nbhd_by_pop,
    calc_nbhd_overlap,
    get_nbhd_meta,
)
from .utils import (
    _add_centroids_to_obsm,
    _dissolve_by_category,
    _get_df_cell,
    _get_gdf_cell,
    _get_gdf_trx,
)


__all__ = [
    "NBHD",
    "_add_centroids_to_obsm",
    "_dissolve_by_category",
    "_get_df_cell",
    "_get_gdf_cell",
    "_get_gdf_trx",
    "alpha_shape",
    "alpha_shape_cell_clusters",
    "calc_grad_nbhd_from_roi",
    "calc_nbhd_bordering",
    "calc_nbhd_by_gene",
    "calc_nbhd_by_pop",
    "calc_nbhd_overlap",
    "filter_alpha_shapes",
    "generate_hextile",
    "get_nbhd_meta",
    "hextile_niche",
]
