anndata
boltons
braceexpand
crick>=0.0.4
google-cloud-storage
jsonargparse[signatures]
lightning>=2.0.9
pyro-ppl
torch>=2.0.0
transformers

[dev]
cellarium-ml[docs,lint,mypy,test]

[docs]
Pillow
sphinx
sphinx_rtd_theme
sphinx-autodoc-typehints
sphinx-copybutton

[lint]
black[jupyter]
ruff

[mypy]
mypy

[test]
pytest
pytest-xdist
tensorboard
