Metadata-Version: 2.4
Name: cell-mosaics
Version: 0.1.0
Summary: Tools for computing and visualizing coverage density maps for cell outlines
Project-URL: Homepage, https://github.com/berenslab/cell_mosaics
Project-URL: Issues, https://github.com/berenslab/cell_mosaics/issues
Author: berenslab
License: MIT
License-File: LICENSE
Requires-Python: >=3.10
Requires-Dist: matplotlib>=3.10.6
Requires-Dist: scikit-image>=0.25.2
Requires-Dist: scipy>=1.16.1
Provides-Extra: dev
Requires-Dist: jupyter>=1.1.1; extra == 'dev'
Requires-Dist: pytest>=8.2; extra == 'dev'
Requires-Dist: scipy-stubs==1.16.1.1; extra == 'dev'
Description-Content-Type: text/markdown

# cell-mosaics

Tools for computing and visualizing coverage density maps for cell outlines.

## Installation

Once published to PyPI:

```bash
pip install cell-mosaics
```

For development, clone the repo and install with dev extras:

```bash
pip install -e .[dev]
```

## Quick start

```python
from cell_mosaics import CoverageDensityMapper

mapper = CoverageDensityMapper(field_bounds=(0, 1000, 0, 1000), resolution=500)
# Add polygons (Nx2 arrays of x,y) via mapper.add_polygon(...)
# Then visualize using plotting utilities in the package.
```

## License

MIT
