LICENSE
MANIFEST.in
README.md
setup.py
celescope/__init__.py
celescope/celescope.py
celescope.egg-info/PKG-INFO
celescope.egg-info/SOURCES.txt
celescope.egg-info/dependency_links.txt
celescope.egg-info/entry_points.txt
celescope.egg-info/requires.txt
celescope.egg-info/top_level.txt
celescope/bulk_rna/__init__.py
celescope/bulk_rna/count.py
celescope/bulk_rna/multi_bulk_rna.py
celescope/bulk_vdj/__init__.py
celescope/bulk_vdj/consensus.py
celescope/bulk_vdj/count_vdj.py
celescope/bulk_vdj/mapping_vdj.py
celescope/bulk_vdj/multi_bulk_vdj.py
celescope/capture_virus/__init__.py
celescope/capture_virus/analysis_virus.py
celescope/capture_virus/count.py
celescope/capture_virus/count_virus.py
celescope/capture_virus/featureCounts.py
celescope/capture_virus/filter_virus.py
celescope/capture_virus/mkref.py
celescope/capture_virus/multi_capture_virus.py
celescope/capture_virus/star_virus.py
celescope/citeseq/__init__.py
celescope/citeseq/analysis_cite.py
celescope/citeseq/count_cite.py
celescope/citeseq/mapping_tag.py
celescope/citeseq/multi_citeseq.py
celescope/dynaseq/__init__.py
celescope/dynaseq/conversion.py
celescope/dynaseq/multi_dynaseq.py
celescope/dynaseq/replacement.py
celescope/dynaseq/substitution.py
celescope/flv_trust4/__init__.py
celescope/flv_trust4/annotation.py
celescope/flv_trust4/assemble.py
celescope/flv_trust4/mapping.py
celescope/flv_trust4/multi_flv_trust4.py
celescope/flv_trust4/summarize.py
celescope/fusion/__init__.py
celescope/fusion/analysis_fusion.py
celescope/fusion/count_fusion.py
celescope/fusion/filter_fusion.py
celescope/fusion/mkref.py
celescope/fusion/multi_fusion.py
celescope/fusion/star_fusion.py
celescope/hla/__init__.py
celescope/hla/mapping_hla.py
celescope/hla/multi_hla.py
celescope/rna/__init__.py
celescope/rna/analysis.py
celescope/rna/mkref.py
celescope/rna/multi_rna.py
celescope/rna/star.py
celescope/snp/__init__.py
celescope/snp/analysis_snp.py
celescope/snp/filter_snp.py
celescope/snp/mkref.py
celescope/snp/multi_snp.py
celescope/snp/variant_calling.py
celescope/sweetseq/__init__.py
celescope/sweetseq/analysis_tag.py
celescope/sweetseq/count_tag.py
celescope/sweetseq/mapping_tag.py
celescope/sweetseq/multi_sweetseq.py
celescope/tag/__init__.py
celescope/tag/analysis_tag.py
celescope/tag/count_tag.py
celescope/tag/mapping_tag.py
celescope/tag/multi_tag.py
celescope/tag/split_tag.py
celescope/tools/__init__.py
celescope/tools/analysis_wrapper.py
celescope/tools/barcode.py
celescope/tools/cells.py
celescope/tools/consensus.py
celescope/tools/count.py
celescope/tools/cutadapt.py
celescope/tools/debug.py
celescope/tools/featureCounts.py
celescope/tools/make_ref.py
celescope/tools/matrix.py
celescope/tools/merge_table.py
celescope/tools/multi.py
celescope/tools/plotly_plot.py
celescope/tools/prep.py
celescope/tools/prep_map.py
celescope/tools/reference.py
celescope/tools/report.py
celescope/tools/sample.py
celescope/tools/star_mixin.py
celescope/tools/starsolo.py
celescope/tools/step.py
celescope/tools/target_metrics.py
celescope/tools/utils.py
celescope/tools/capture/__init__.py
celescope/tools/capture/analysis.py
celescope/tools/capture/count_bam.py
celescope/tools/capture/filter.py
celescope/tools/capture/threshold.py
celescope/tools/emptydrop_cr/__init__.py
celescope/tools/emptydrop_cr/cell_calling_3.py
celescope/tools/emptydrop_cr/get_plot_elements.py
celescope/tools/emptydrop_cr/sgt.py
celescope/tools/emptydrop_cr/stats.py
celescope/tools/tag/__init__.py
celescope/tools/tag/analysis_tag.py
celescope/tools/tag/count_tag.py
celescope/tools/tag/mapping_tag.py
celescope/utils/__init__.py
celescope/utils/mapping_vdj.py
celescope/utils/mkgtf.py
celescope/vdj/__init__.py
celescope/vdj/count_vdj.py
celescope/vdj/mapping_vdj.py
celescope/vdj/mkref.py
celescope/vdj/multi_vdj.py
scripts/__init__.py
scripts/add_tag.py
scripts/add_zero_count_genes.py
scripts/extract_read.py
scripts/generate_docs.py
scripts/release_local.py
tests/__init__.py
tests/conftest.py
tests/test_function.py
tests/test_multi.py
tests/unittests/__init__.py
tests/unittests/snp/__init__.py
tests/unittests/snp/test_snp.py
tests/unittests/snp/test_variant_calling.py