DESCRIPTION.md
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
cayman/__init__.py
cayman/__main__.py
cayman/handle_args.py
cayman.egg-info/PKG-INFO
cayman.egg-info/SOURCES.txt
cayman.egg-info/dependency_links.txt
cayman.egg-info/entry_points.txt
cayman.egg-info/not-zip-safe
cayman.egg-info/requires.txt
cayman.egg-info/top_level.txt
cayman/bin/__init__.py
gqlib/__init__.py
gqlib/__main__.py
gqlib/handle_args.py
gqlib/alignment/__init__.py
gqlib/alignment/aln_group.py
gqlib/alignment/bamreader.py
gqlib/alignment/pysam_alignment_processor.py
gqlib/annotation/__init__.py
gqlib/annotation/count_annotator.py
gqlib/annotation/count_writer.py
gqlib/bin/__init__.py
gqlib/bin/build_bed_database.py
gqlib/bin/build_custom_database.py
gqlib/bin/build_domain_database.py
gqlib/bin/build_gene_database.py
gqlib/bin/build_pg3_database.py
gqlib/bin/collate_counts.py
gqlib/bin/collate_studies.py
gqlib/bin/db_collate.py
gqlib/bin/db_collate2.py
gqlib/bin/split_table.py
gqlib/counters/__init__.py
gqlib/counters/alignment_counter.py
gqlib/counters/count_manager.py
gqlib/counters/region_counter.py
gqlib/counters/seq_counter.py
gqlib/db/__init__.py
gqlib/db/annotation_db.py
gqlib/db/database.py
gqlib/db/db_import.py
gqlib/db/gff_dbm.py
gqlib/db/models/__init__.py
gqlib/db/models/db.py
gqlib/db/models/meta.py
gqlib/profilers/__init__.py
gqlib/profilers/feature_quantifier.py
gqlib/profilers/gene_quantifier.py
gqlib/profilers/region_quantifier.py
gqlib/runners/__init__.py
gqlib/runners/alignment_runner.py
gqlib/ui/__init__.py
gqlib/ui/validation.py