AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
cayenne/__init__.py
cayenne/model_io.py
cayenne/results.py
cayenne/simulation.py
cayenne/utils.c
cayenne/utils.pxd
cayenne/utils.pyx
cayenne.egg-info/PKG-INFO
cayenne.egg-info/SOURCES.txt
cayenne.egg-info/dependency_links.txt
cayenne.egg-info/not-zip-safe
cayenne.egg-info/requires.txt
cayenne.egg-info/top_level.txt
cayenne/algorithms/__init__.py
cayenne/algorithms/direct.c
cayenne/algorithms/direct.pyx
cayenne/algorithms/tau_adaptive.c
cayenne/algorithms/tau_adaptive.pyx
cayenne/algorithms/tau_leaping.c
cayenne/algorithms/tau_leaping.pyx
docs/Makefile
docs/algorithms.rst
docs/authors.rst
docs/cayenne.algorithms.rst
docs/cayenne.rst
docs/conf.py
docs/contributing.rst
docs/examples.rst
docs/history.rst
docs/index.rst
docs/make.bat
docs/modules.rst
docs/readme.rst
docs/tutorial.rst
docs/_build/html/_images/ex_0.png
docs/_build/html/_images/ex_1a.png
docs/_build/html/_images/ex_1b.png
docs/_build/html/_images/ex_2a.png
docs/_build/html/_images/ex_2b.png
docs/_build/html/_images/plot_ac.png
docs/_build/html/_images/plot_basic.png
docs/_build/html/_static/file.png
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
docs/images/ex_0.png
docs/images/ex_1a.png
docs/images/ex_1b.png
docs/images/ex_2a.png
docs/images/ex_2b.png
docs/images/logo.png
docs/images/plot_ac.png
docs/images/plot_basic.png
tests/__init__.py
tests/conftest.py
tests/test_accuracy.py
tests/test_adaptive.py
tests/test_cython.py
tests/test_get_kstoc.py
tests/test_model_io.py
tests/test_plot.py
tests/test_results.py
tests/test_simulation.py
tests/data/results_00001.csv
tests/data/results_00003.csv
tests/data/results_00004.csv
tests/data/results_00005.csv
tests/data/results_00011.csv
tests/data/results_00020.csv
tests/data/results_00021.csv
tests/data/results_00022.csv
tests/data/results_00023.csv
tests/data/results_00030.csv
tests/data/results_00031.csv
tests/data/results_00037.csv
tests/data/results_00038.csv
tests/data/results_00039.csv
tests/models/00001.txt
tests/models/00001.xml