.gitattributes
AUTHORS
Boilerplate.py
ChangeLog
LICENSE
MANIFEST.in
Makefile
README.md
__init__.py
converter.py
latex_integraton.py
requirements.txt
setup.cfg
setup.py
.github/workflows/python-package.yml
.vscode/launch.json
catPyNet/Utilities.py
catPyNet/__init__.py
catPyNet/algorithm/AlgorithmBase.py
catPyNet/algorithm/CoreRAFAlgorithm.py
catPyNet/algorithm/GreedilyGrowMaxCAF2MaxRAF.py
catPyNet/algorithm/Importance.py
catPyNet/algorithm/MaxCAFAlgorithm.py
catPyNet/algorithm/MaxPseudoRAFAlgorithm.py
catPyNet/algorithm/MaxRAFAlgorithm.py
catPyNet/algorithm/MinIRAFHeuristic.py
catPyNet/algorithm/MinRAFGeneratingElement.py
catPyNet/algorithm/__init__.py
catPyNet/fileIO/GraphIO.py
catPyNet/fileIO/IOManager.py
catPyNet/fileIO/ModelIO.py
catPyNet/fileIO/__init__.py
catPyNet/main/CatPyNet.py
catPyNet/main/__init__.py
catPyNet/model/DisjunctiveNormalForm.py
catPyNet/model/MoleculeType.py
catPyNet/model/Reaction.py
catPyNet/model/ReactionSystem.py
catPyNet/model/__init__.py
catPyNet/settings/ArrowNotation.py
catPyNet/settings/ReactionNotation.py
catPyNet/settings/__init__.py
catPyNet/tests/__init__.py
catPyNet/tests/context.py
catPyNet/tests/issues.txt
catPyNet/tests/test_advanced.py
catPyNet/tests/test_basic.py
catPyNet/tools/CommandLineTool.py
catPyNet/tools/PolymerTool.py
catPyNet/tools/__init__.py
catpynet/Utilities.py
catpynet/__init__.py
catpynet.egg-info/PKG-INFO
catpynet.egg-info/SOURCES.txt
catpynet.egg-info/dependency_links.txt
catpynet.egg-info/not-zip-safe
catpynet.egg-info/pbr.json
catpynet.egg-info/requires.txt
catpynet.egg-info/top_level.txt
catpynet/algorithm/AlgorithmBase.py
catpynet/algorithm/CoreRAFAlgorithm.py
catpynet/algorithm/GreedilyGrowMaxCAF2MaxRAF.py
catpynet/algorithm/Importance.py
catpynet/algorithm/MaxCAFAlgorithm.py
catpynet/algorithm/MaxPseudoRAFAlgorithm.py
catpynet/algorithm/MaxRAFAlgorithm.py
catpynet/algorithm/MinIRAFHeuristic.py
catpynet/algorithm/MinRAFGeneratingElement.py
catpynet/algorithm/__init__.py
catpynet/fileIO/GraphIO.py
catpynet/fileIO/IOManager.py
catpynet/fileIO/ModelIO.py
catpynet/fileIO/__init__.py
catpynet/main/CatPyNet.py
catpynet/main/__init__.py
catpynet/model/DisjunctiveNormalForm.py
catpynet/model/MoleculeType.py
catpynet/model/Reaction.py
catpynet/model/ReactionSystem.py
catpynet/model/__init__.py
catpynet/settings/ArrowNotation.py
catpynet/settings/ReactionNotation.py
catpynet/settings/__init__.py
catpynet/tests/__init__.py
catpynet/tests/context.py
catpynet/tests/test_advanced.py
catpynet/tests/test_basic.py
catpynet/tools/CommandLineTool.py
catpynet/tools/PolymerTool.py
catpynet/tools/__init__.py
catrenet_results/results/Core/example-0-coreRaf.crs
catrenet_results/results/Core/example-1-log.txt
catrenet_results/results/Core/example-10-coreRaf.crs
catrenet_results/results/Core/example-2-log.txt
catrenet_results/results/Core/example-3-log.txt
catrenet_results/results/Core/example-4-log.txt
catrenet_results/results/Core/example-5-log.txt
catrenet_results/results/Core/example-6-log.txt
catrenet_results/results/Core/example-7-log.txt
catrenet_results/results/Core/example-8-log.txt
catrenet_results/results/Core/example-9-coreRaf.crs
catrenet_results/results/Core/inhibitions-1-coreRaf.crs
catrenet_results/results/Core/prokaryotic-network-log.txt
catrenet_results/results/iRAF/example-0-iraf.crs
catrenet_results/results/iRAF/example-1-iraf.crs
catrenet_results/results/iRAF/example-10-iraf.crs
catrenet_results/results/iRAF/example-2-iraf.crs
catrenet_results/results/iRAF/example-3-iraf.crs
catrenet_results/results/iRAF/example-4-iraf.crs
catrenet_results/results/iRAF/example-5-iraf.crs
catrenet_results/results/iRAF/example-6-iraf.crs
catrenet_results/results/iRAF/example-7-iraf.crs
catrenet_results/results/iRAF/example-8-iraf.crs
catrenet_results/results/iRAF/example-9-iraf.crs
catrenet_results/results/iRAF/inhibitions-1-iraf.crs
catrenet_results/results/iRAF/prokaryotic-network-iraf.crs
docs/Makefile
docs/conf.py
docs/index.rst
docs/make.bat
licenses/CatReNet_LICENSE.txt
licenses/Hypothesis_LICENSE.txt
licenses/Networkx_LICENSE.txt
licenses/Pbr_LICENSE.txt
licenses/Structure_LICENSE.txt
licenses/Tqdm_LICENCE.txt
test_files/distraction.txt
test_files/distraction2.gml
test_files/distraction3.graphml
test_files/eco00010             Glycolysis  Gl.txt
test_files/example-0.crs
test_files/example-1.crs
test_files/example-10.crs
test_files/example-2.crs
test_files/example-3.crs
test_files/example-4.crs
test_files/example-5.crs
test_files/example-6.crs
test_files/example-7.crs
test_files/example-8.crs
test_files/example-9.crs
test_files/inhibitions-1.crs
test_files/prokaryotic-network.crs
test_results/e_coli_rs.crs
test_results/e_coli_rs_shared.crs
test_results/example-0.crs
test_results/example-1.crs
test_results/example-10.crs
test_results/example-2.crs
test_results/example-3.crs
test_results/example-4.crs
test_results/example-5.crs
test_results/example-6.crs
test_results/example-7.crs
test_results/example-8.crs
test_results/example-9.crs
test_results/inhibitions-1.crs
test_results/prokaryotic-network.crs
test_results/result.crs
test_results/result4.crs
test_results/result4.graphml
test_results/test_reactions.crs
test_results/test_reactions_max_caf.crs
test_results/test_reactions_max_raf.crs
test_results/test_reactions_min_irr_raf.crs
test_results/test_reactions_min_raf_gen.crs
test_results/poly_test/pm_a7_k1_n6_m1-0_r1.crs
test_results/poly_test/pm_a7_k1_n6_m2-0_r1.crs
test_results/poly_test/pm_a7_k2_n6_m1-0_r1.crs
test_results/poly_test/pm_a7_k2_n6_m2-0_r1.crs