numpy<1.15,>1.0
matplotlib>=2.2.2
pandas>=0.22.0
networkx>=2.0
tqdm>=4
ete3>=3.1.1
argparse>=1.1
Biopython>=1.71
pathlib
pandas-charm>=0.1.3
pysam>=0.14.1
bokeh>=0.12.15
PyYAML>=3.12
cython>=0.29.2
scipy>=1.2.0
python-Levenshtein
nbconvert>=5.4.0
nbformat>=4.4.0
hits
scikit-bio>=0.5.5
