.gitignore
LICENSE
README.rst
setup.py
CamoTSS/__init__.py
CamoTSS/version.py
CamoTSS.egg-info/PKG-INFO
CamoTSS.egg-info/SOURCES.txt
CamoTSS.egg-info/dependency_links.txt
CamoTSS.egg-info/entry_points.txt
CamoTSS.egg-info/requires.txt
CamoTSS.egg-info/top_level.txt
CamoTSS/bin/__init__.py
CamoTSS/bin/count.py
CamoTSS/utils/__init__.py
CamoTSS/utils/build_ref.py
CamoTSS/utils/get_counts.py
CamoTSS/utils/get_inputfile_toBrie.py
doc/Makefile
doc/conf.py
doc/index.rst
doc/install.rst
doc/preprocess.rst
doc/requirements.txt
doc/run_CamoTSS.rst
doc/image/classifier.png
doc/image/flow_chart.png
notebook/Fig1D_classifier.ipynb
notebook/Fig1E.ipynb
notebook/Fig1H.ipynb
notebook/Fig2A.ipynb
notebook/Fig2E.ipynb
notebook/Fig2F.ipynb
notebook/Fig2H.ipynb
notebook/Fig2I.ipynb
notebook/Fig3_NPC.ipynb
notebook/Fig3_detect_TSS_shift_in_NPC_dataset.ipynb
notebook/Fig4I.ipynb
test/32_4_feature.csv
test/Homo_sapiens.GRCh38.105.chr_test.gtf
test/logistic_36feature_model.sav
test/train_fromSCAFE.csv
test/trian_ourself_dataset.csv