"""
camcops_server/alembic/versions/0040_khandaker_mojo_medical.py

===============================================================================

    Copyright (C) 2012, University of Cambridge, Department of Psychiatry.
    Created by Rudolf Cardinal (rnc1001@cam.ac.uk).

    This file is part of CamCOPS.

    CamCOPS is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    CamCOPS is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with CamCOPS. If not, see <https://www.gnu.org/licenses/>.

===============================================================================

DATABASE REVISION SCRIPT

khandaker_mojo_medical

Revision ID: 0040
Revises: 0039
Creation date: 2019-08-20 10:31:51.551475

"""

# =============================================================================
# Imports
# =============================================================================

from alembic import op
import sqlalchemy as sa

from camcops_server.cc_modules.cc_sqla_coltypes import (
    PendulumDateTimeAsIsoTextColType,
    SemanticVersionColType,
)


# =============================================================================
# Revision identifiers, used by Alembic.
# =============================================================================

revision = "0040"
down_revision = "0039"
branch_labels = None
depends_on = None


# =============================================================================
# The upgrade/downgrade steps
# =============================================================================


# noinspection PyPep8,PyTypeChecker
def upgrade() -> None:
    # ### commands auto generated by Alembic - please adjust! ###
    op.create_table(
        "khandaker_mojo_medical",
        sa.Column(
            "diagnosis",
            sa.Integer(),
            nullable=True,
            comment=(
                "Diagnosis (0 Rheumatoid Arthritis, 1 Ankylosing Spondylitis,"
                " 2 Sjögren’s Syndrome)"
            ),
        ),
        sa.Column(
            "diagnosis_date",
            sa.Date(),
            nullable=True,
            comment=(
                "Date of first diagnosis (may be approx from 'duration of"
                " illness (years))'"
            ),
        ),
        sa.Column(
            "diagnosis_date_approximate",
            sa.Boolean(),
            nullable=True,
            comment="True if diagnosis date was derived from duration",
        ),
        sa.Column(
            "has_fibromyalgia",
            sa.Boolean(),
            nullable=True,
            comment="Do you have a diagnosis of fibromyalgia?",
        ),
        sa.Column(
            "is_pregnant",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Are you, or is there any possibility that you might be"
                " pregnant?"
            ),
        ),
        sa.Column(
            "has_infection_past_month",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Do you currently have an infection, or had treatment for an"
                " infection (e.g antibiotics) in the past month?"
            ),
        ),
        sa.Column(
            "had_infection_two_months_preceding",
            sa.Boolean(name="ck_kh2mm_had_infection"),
            nullable=True,
            comment=(
                "Have you had an infection, or had treatment for an infection"
                " (e.g antibiotics) in the 2 months preceding last month?"
            ),
        ),
        sa.Column(
            "has_alcohol_substance_dependence",
            sa.Boolean(name="ck_kh2mm_has_alcohol"),
            nullable=True,
            comment=(
                "Do you have a current diagnosis of alcohol or substance"
                " dependence?"
            ),
        ),
        sa.Column(
            "smoking_status",
            sa.Integer(),
            nullable=True,
            comment=(
                "What is your smoking status? (0 Never smoked, 1 Ex-smoker, 2"
                " Current smoker)"
            ),
        ),
        sa.Column(
            "alcohol_units_per_week",
            sa.Float(),
            nullable=True,
            comment=(
                "How much alcohol do you drink per week? (medium glass of wine"
                " = 2 units, pint of beer at 4.5% = 2.5 units, 25ml of spirits"
                " at 40% = 1 unit)"
            ),
        ),
        sa.Column(
            "depression",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Have you had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "bipolar_disorder",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Have you had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "schizophrenia",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Have you had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "autism",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Have you had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "ptsd",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Have you had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "anxiety",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Have you had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "personality_disorder",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Have you had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "intellectual_disability",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Have you had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "other_mental_illness",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Have you had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "other_mental_illness_details",
            sa.UnicodeText(),
            nullable=True,
            comment="If other, please list here",
        ),
        sa.Column(
            "hospitalised_in_last_year",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Have you had a physical or mental illness requiring"
                " hospitalisation in the previous 12 months?"
            ),
        ),
        sa.Column(
            "hospitalisation_details",
            sa.UnicodeText(),
            nullable=True,
            comment=(
                "If yes, please list here (name of illness, number of"
                " hospitilisations and duration):"
            ),
        ),
        sa.Column(
            "family_depression",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Has anyone in your immediate family (parents, siblings or"
                " children) had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "family_bipolar_disorder",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Has anyone in your immediate family (parents, siblings or"
                " children) had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "family_schizophrenia",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Has anyone in your immediate family (parents, siblings or"
                " children) had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "family_autism",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Has anyone in your immediate family (parents, siblings or"
                " children) had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "family_ptsd",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Has anyone in your immediate family (parents, siblings or"
                " children) had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "family_anxiety",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Has anyone in your immediate family (parents, siblings or"
                " children) had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "family_personality_disorder",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Has anyone in your immediate family (parents, siblings or"
                " children) had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "family_intellectual_disability",
            sa.Boolean(name="ck_kh2mm_fam_int_dis"),
            nullable=True,
            comment=(
                "Has anyone in your immediate family (parents, siblings or"
                " children) had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "family_other_mental_illness",
            sa.Boolean(),
            nullable=True,
            comment=(
                "Has anyone in your immediate family (parents, siblings or"
                " children) had any of the following conditions diagnosed by a"
                " doctor?"
            ),
        ),
        sa.Column(
            "family_other_mental_illness_details",
            sa.UnicodeText(),
            nullable=True,
            comment="If other, please list here",
        ),
        sa.Column(
            "patient_id",
            sa.Integer(),
            nullable=False,
            comment="(TASK) Foreign key to patient.id (for this device/era)",
        ),
        sa.Column(
            "when_created",
            PendulumDateTimeAsIsoTextColType(length=32),
            nullable=False,
            comment=(
                "(TASK) Date/time this task instance was created (ISO 8601)"
            ),
        ),
        sa.Column(
            "when_firstexit",
            PendulumDateTimeAsIsoTextColType(length=32),
            nullable=True,
            comment=(
                "(TASK) Date/time of the first exit from this task (ISO 8601)"
            ),
        ),
        sa.Column(
            "firstexit_is_finish",
            sa.Boolean(),
            nullable=True,
            comment=(
                "(TASK) Was the first exit from the task because it was"
                " finished (1)?"
            ),
        ),
        sa.Column(
            "firstexit_is_abort",
            sa.Boolean(),
            nullable=True,
            comment=(
                "(TASK) Was the first exit from this task because it was"
                " aborted (1)?"
            ),
        ),
        sa.Column(
            "editing_time_s",
            sa.Float(),
            nullable=True,
            comment="(TASK) Time spent editing (s)",
        ),
        sa.Column(
            "_pk",
            sa.Integer(),
            autoincrement=True,
            nullable=False,
            comment="(SERVER) Primary key (on the server)",
        ),
        sa.Column(
            "_device_id",
            sa.Integer(),
            nullable=False,
            comment="(SERVER) ID of the source tablet device",
        ),
        sa.Column(
            "_era",
            sa.String(length=32),
            nullable=False,
            comment=(
                "(SERVER) 'NOW', or when this row was preserved and removed"
                " from the source device (UTC ISO 8601)"
            ),
        ),
        sa.Column(
            "_current",
            sa.Boolean(),
            nullable=False,
            comment="(SERVER) Is the row current (1) or not (0)?",
        ),
        sa.Column(
            "_when_added_exact",
            PendulumDateTimeAsIsoTextColType(length=32),
            nullable=True,
            comment="(SERVER) Date/time this row was added (ISO 8601)",
        ),
        sa.Column(
            "_when_added_batch_utc",
            sa.DateTime(),
            nullable=True,
            comment=(
                "(SERVER) Date/time of the upload batch that added this row"
                " (DATETIME in UTC)"
            ),
        ),
        sa.Column(
            "_adding_user_id",
            sa.Integer(),
            nullable=True,
            comment="(SERVER) ID of user that added this row",
        ),
        sa.Column(
            "_when_removed_exact",
            PendulumDateTimeAsIsoTextColType(length=32),
            nullable=True,
            comment=(
                "(SERVER) Date/time this row was removed, i.e. made not"
                " current (ISO 8601)"
            ),
        ),
        sa.Column(
            "_when_removed_batch_utc",
            sa.DateTime(),
            nullable=True,
            comment=(
                "(SERVER) Date/time of the upload batch that removed this row"
                " (DATETIME in UTC)"
            ),
        ),
        sa.Column(
            "_removing_user_id",
            sa.Integer(),
            nullable=True,
            comment="(SERVER) ID of user that removed this row",
        ),
        sa.Column(
            "_preserving_user_id",
            sa.Integer(),
            nullable=True,
            comment="(SERVER) ID of user that preserved this row",
        ),
        sa.Column(
            "_forcibly_preserved",
            sa.Boolean(),
            nullable=True,
            comment=(
                "(SERVER) Forcibly preserved by superuser (rather than"
                " normally preserved by tablet)?"
            ),
        ),
        sa.Column(
            "_predecessor_pk",
            sa.Integer(),
            nullable=True,
            comment="(SERVER) PK of predecessor record, prior to modification",
        ),
        sa.Column(
            "_successor_pk",
            sa.Integer(),
            nullable=True,
            comment=(
                "(SERVER) PK of successor record  (after modification) or NULL"
                " (whilst live, or after deletion)"
            ),
        ),
        sa.Column(
            "_manually_erased",
            sa.Boolean(),
            nullable=True,
            comment="(SERVER) Record manually erased (content destroyed)?",
        ),
        sa.Column(
            "_manually_erased_at",
            PendulumDateTimeAsIsoTextColType(length=32),
            nullable=True,
            comment="(SERVER) Date/time of manual erasure (ISO 8601)",
        ),
        sa.Column(
            "_manually_erasing_user_id",
            sa.Integer(),
            nullable=True,
            comment="(SERVER) ID of user that erased this row manually",
        ),
        sa.Column(
            "_camcops_version",
            SemanticVersionColType(length=147),
            nullable=True,
            comment="(SERVER) CamCOPS version number of the uploading device",
        ),
        sa.Column(
            "_addition_pending",
            sa.Boolean(),
            nullable=False,
            comment="(SERVER) Addition pending?",
        ),
        sa.Column(
            "_removal_pending",
            sa.Boolean(),
            nullable=True,
            comment="(SERVER) Removal pending?",
        ),
        sa.Column(
            "_group_id",
            sa.Integer(),
            nullable=False,
            comment="(SERVER) ID of group to which this record belongs",
        ),
        sa.Column(
            "id",
            sa.Integer(),
            nullable=False,
            comment="(TASK) Primary key (task ID) on the tablet device",
        ),
        sa.Column(
            "when_last_modified",
            PendulumDateTimeAsIsoTextColType(length=32),
            nullable=True,
            comment=(
                "(STANDARD) Date/time this row was last modified on the source"
                " tablet device (ISO 8601)"
            ),
        ),
        sa.Column(
            "_move_off_tablet",
            sa.Boolean(),
            nullable=True,
            comment="(SERVER/TABLET) Record-specific preservation pending?",
        ),
        sa.ForeignKeyConstraint(
            ["_adding_user_id"],
            ["_security_users.id"],
            name=op.f("fk_khandaker_mojo_medical__adding_user_id"),
        ),
        sa.ForeignKeyConstraint(
            ["_device_id"],
            ["_security_devices.id"],
            name=op.f("fk_khandaker_mojo_medical__device_id"),
        ),
        sa.ForeignKeyConstraint(
            ["_group_id"],
            ["_security_groups.id"],
            name=op.f("fk_khandaker_mojo_medical__group_id"),
        ),
        sa.ForeignKeyConstraint(
            ["_manually_erasing_user_id"],
            ["_security_users.id"],
            name=op.f("fk_khandaker_mojo_medical__manually_erasing_user_id"),
        ),
        sa.ForeignKeyConstraint(
            ["_preserving_user_id"],
            ["_security_users.id"],
            name=op.f("fk_khandaker_mojo_medical__preserving_user_id"),
        ),
        sa.ForeignKeyConstraint(
            ["_removing_user_id"],
            ["_security_users.id"],
            name=op.f("fk_khandaker_mojo_medical__removing_user_id"),
        ),
        sa.PrimaryKeyConstraint("_pk", name=op.f("pk_khandaker_mojo_medical")),
        mysql_charset="utf8mb4 COLLATE utf8mb4_unicode_ci",
        mysql_engine="InnoDB",
        mysql_row_format="DYNAMIC",
    )
    with op.batch_alter_table(
        "khandaker_mojo_medical", schema=None
    ) as batch_op:
        batch_op.create_index(
            batch_op.f("ix_khandaker_mojo_medical__current"),
            ["_current"],
            unique=False,
        )
        batch_op.create_index(
            batch_op.f("ix_khandaker_mojo_medical__device_id"),
            ["_device_id"],
            unique=False,
        )
        batch_op.create_index(
            batch_op.f("ix_khandaker_mojo_medical__era"),
            ["_era"],
            unique=False,
        )
        batch_op.create_index(
            batch_op.f("ix_khandaker_mojo_medical__group_id"),
            ["_group_id"],
            unique=False,
        )
        batch_op.create_index(
            batch_op.f("ix_khandaker_mojo_medical__pk"), ["_pk"], unique=False
        )
        batch_op.create_index(
            batch_op.f("ix_khandaker_mojo_medical_id"), ["id"], unique=False
        )
        batch_op.create_index(
            batch_op.f("ix_khandaker_mojo_medical_patient_id"),
            ["patient_id"],
            unique=False,
        )
        batch_op.create_index(
            batch_op.f("ix_khandaker_mojo_medical_when_last_modified"),
            ["when_last_modified"],
            unique=False,
        )


# noinspection PyPep8,PyTypeChecker
def downgrade() -> None:
    op.drop_table("khandaker_mojo_medical")
