LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
beaconServer/__init__.py
beaconServer/aggregator.py
beaconServer/beacon.py
beaconServer/cohorts.py
beaconServer/configuration.py
beaconServer/datasets.py
beaconServer/entryTypes.py
beaconServer/filteringTerms.py
beaconServer/info.py
beaconServer/map.py
beaconServer/retriever.py
beaconServer/service_info.py
bycon.egg-info/PKG-INFO
bycon.egg-info/SOURCES.txt
bycon.egg-info/dependency_links.txt
bycon.egg-info/requires.txt
bycon.egg-info/top_level.txt
config/argument_definitions.yaml
config/beacon_defaults.yaml
config/beacon_mappings.yaml
config/config.yaml
config/dataset_definitions.yaml
config/datatable_mappings.yaml
config/filter_definitions.yaml
config/geoloc_definitions.yaml
config/handover_definitions.yaml
config/interval_definitions.yaml
config/remap_definitions.yaml
config/services_defaults.yaml
config/services_mappings.yaml
config/variant_definitions.yaml
lib/__init__.py
lib/aggregator_utils.py
lib/args_parsing.py
lib/cgi_parsing.py
lib/cytoband_utils.py
lib/data_retrieval.py
lib/datatable_utils.py
lib/export_file_generation.py
lib/filter_parsing.py
lib/geomap_utils.py
lib/handover_generation.py
lib/interval_utils.py
lib/publication_utils.py
lib/query_execution.py
lib/query_generation.py
lib/read_specs.py
lib/response_remapping.py
lib/schema_parsing.py
lib/service_utils.py
lib/variant_parsing.py
lib/__pycache__/aggregator_utils.cpython-310.pyc
lib/__pycache__/args_parsing.cpython-310.pyc
lib/__pycache__/cgi_parsing.cpython-310.pyc
lib/__pycache__/cytoband_utils.cpython-310.pyc
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lib/__pycache__/service_utils.cpython-310.pyc
lib/__pycache__/variant_parsing.cpython-310.pyc
rsrc/.DS_Store
rsrc/genomes/.DS_Store
rsrc/genomes/grch38/cytoBandIdeo.txt
rsrc/genomes/hg16/cytoBandIdeo.txt
rsrc/genomes/hg17/cytoBandIdeo.txt
rsrc/genomes/hg18/cytoBandIdeo.txt
rsrc/genomes/hg19/cytoBandIdeo.txt
rsrc/genomes/mSarHar1.11/cytoBandIdeo.txt
rsrc/genomes/mm8/cytoBandIdeo.txt
rsrc/genomes/mm9/cytoBandIdeo.txt
rsrc/genomes/zf7/cytoBandIdeo.txt
schemas/.DS_Store
schemas/README.md
schemas/ProgenetixLinkML/Publication.json
schemas/ProgenetixLinkML/Publication.yaml
schemas/ProgenetixLinkML/README.md
schemas/ProgenetixLinkML/testpub.json
schemas/bin/beaconYamler.py
schemas/bin/yamlerRunner.sh
schemas/bin/config/beaconYamler.yaml
schemas/framework/.DS_Store
schemas/framework/json/endpoints.json
schemas/framework/json/common/basicElement.json
schemas/framework/json/common/beaconCommonComponents.json
schemas/framework/json/common/elementWithDescription.json
schemas/framework/json/common/ontologizedElement.json
schemas/framework/json/common/ontologyTerm.json
schemas/framework/json/common/referenceToAnSchema.json
schemas/framework/json/common/examples/basicElement-example.json
schemas/framework/json/common/examples/beaconCommonComponents-example.json
schemas/framework/json/common/examples/elementWithDescription-example.json
schemas/framework/json/common/examples/ontologizedElement-example.json
schemas/framework/json/common/examples/ontologyTerm-example.json
schemas/framework/json/common/examples/referenceToAnSchema-MAX-example.json
schemas/framework/json/common/examples/referenceToAnSchema-MIN-example.json
schemas/framework/json/common/validation/beaconCommonComponents.json
schemas/framework/json/configuration/beaconConfigurationSchema.json
schemas/framework/json/configuration/beaconMapSchema.json
schemas/framework/json/configuration/entryTypeDefinition.json
schemas/framework/json/configuration/entryTypesSchema.json
schemas/framework/json/configuration/filteringTermsSchema.json
schemas/framework/json/configuration/examples/beaconConfiguration-example.json
schemas/framework/json/configuration/examples/beaconConfigurationFilteringTerms-example.json
schemas/framework/json/configuration/examples/beaconMap-MIN-example.json
schemas/framework/json/configuration/examples/beaconMap-example.json
schemas/framework/json/configuration/examples/entriesCollectionDefinition_MIN_example.json
schemas/framework/json/configuration/examples/entriesCollectionDefinition_example.json
schemas/framework/json/configuration/examples/entryTypeDefinition-MIN-example.json
schemas/framework/json/requests/beaconRequestBody.json
schemas/framework/json/requests/beaconRequestMeta.json
schemas/framework/json/requests/filteringTerms.json
schemas/framework/json/requests/requestParameters.json
schemas/framework/json/requests/examples-fullDocuments/beaconRequestBody-MAX-example.json
schemas/framework/json/requests/examples-fullDocuments/beaconRequestBody-MIN-example.json
schemas/framework/json/requests/examples-sections/beaconRequestMeta-example.json
schemas/framework/json/requests/examples-sections/filteringTerms-example.json
schemas/framework/json/requests/examples-sections/requestParameters-example.json
schemas/framework/json/requests/validation/filteringTerms.json
schemas/framework/json/responses/beaconBooleanResponse.json
schemas/framework/json/responses/beaconCollectionsResponse.json
schemas/framework/json/responses/beaconConfigurationResponse.json
schemas/framework/json/responses/beaconCountResponse.json
schemas/framework/json/responses/beaconEntryTypesResponse.json
schemas/framework/json/responses/beaconErrorResponse.json
schemas/framework/json/responses/beaconFilteringTermsResponse.json
schemas/framework/json/responses/beaconInfoResponse.json
schemas/framework/json/responses/beaconMapResponse.json
schemas/framework/json/responses/beaconResultsetsResponse.json
schemas/framework/json/responses/ga4gh-service-info-1-0-0-schema.json
schemas/framework/json/responses/examples-fullDocuments/beaconBooleanResponse-example.json
schemas/framework/json/responses/examples-fullDocuments/beaconCollectionsResponse-MID-example.json
schemas/framework/json/responses/examples-fullDocuments/beaconCollectionsResponse-MIN-example.json
schemas/framework/json/responses/examples-fullDocuments/beaconConfigurationResponse-example.json
schemas/framework/json/responses/examples-fullDocuments/beaconCountResponse-example.json
schemas/framework/json/responses/examples-fullDocuments/beaconEntryTypesResponse-example.json
schemas/framework/json/responses/examples-fullDocuments/beaconErrorResponse_example.json
schemas/framework/json/responses/examples-fullDocuments/beaconFilteringTermsResponse-example.json
schemas/framework/json/responses/examples-fullDocuments/beaconInfo-MAX-example.json
schemas/framework/json/responses/examples-fullDocuments/beaconInfo-MIN-example.json
schemas/framework/json/responses/examples-fullDocuments/beaconMapResponse-example.json
schemas/framework/json/responses/examples-fullDocuments/beaconResultsetResponse-MIN-example.json
schemas/framework/json/responses/examples-sections/beaconBooleanResponseSection-example.json
schemas/framework/json/responses/examples-sections/beaconCountResponseSection-example.json
schemas/framework/json/responses/examples-sections/beaconInformationalResponseMeta-example.json
schemas/framework/json/responses/examples-sections/beaconReceivedRequestSummary-MAX-example.json
schemas/framework/json/responses/examples-sections/beaconReceivedRequestSummary-MIN-example.json
schemas/framework/json/responses/examples-sections/beaconResponseMeta-example.json
schemas/framework/json/responses/examples-sections/beaconResultsetEmpty-example.json
schemas/framework/json/responses/examples-sections/beaconResultsets-MAX-example.json
schemas/framework/json/responses/examples-sections/beaconResultsets-MID-example.json
schemas/framework/json/responses/examples-sections/beaconResultsets-MIN-example.json
schemas/framework/json/responses/sections/beaconBooleanResponseSection.json
schemas/framework/json/responses/sections/beaconCountResponseSection.json
schemas/framework/json/responses/sections/beaconFilteringTermsResults.json
schemas/framework/json/responses/sections/beaconInfoResults.json
schemas/framework/json/responses/sections/beaconInformationalResponseMeta.json
schemas/framework/json/responses/sections/beaconReceivedRequestSummary.json
schemas/framework/json/responses/sections/beaconResponseMeta.json
schemas/framework/json/responses/sections/beaconResultsets.json
schemas/framework/json/responses/sections/beaconSummaryResponseSection.json
schemas/framework/src/README.md
schemas/framework/src/endpoints.yaml
schemas/framework/src/common/basicElement.yaml
schemas/framework/src/common/beaconCommonComponents.yaml
schemas/framework/src/common/elementWithDescription.yaml
schemas/framework/src/common/ontologizedElement.yaml
schemas/framework/src/common/ontologyTerm.yaml
schemas/framework/src/common/referenceToAnSchema.yaml
schemas/framework/src/common/examples/basicElement-example.yaml
schemas/framework/src/common/examples/beaconCommonComponents-example.yaml
schemas/framework/src/common/examples/elementWithDescription-example.yaml
schemas/framework/src/common/examples/ontologizedElement-example.yaml
schemas/framework/src/common/examples/ontologyTerm-example.yaml
schemas/framework/src/common/examples/referenceToAnSchema-MAX-example.yaml
schemas/framework/src/common/examples/referenceToAnSchema-MIN-example.yaml
schemas/framework/src/common/validation/beaconCommonComponents.yaml
schemas/framework/src/configuration/beaconConfigurationSchema.yaml
schemas/framework/src/configuration/beaconMapSchema.yaml
schemas/framework/src/configuration/entryTypeDefinition.yaml
schemas/framework/src/configuration/entryTypesSchema.yaml
schemas/framework/src/configuration/filteringTermsSchema.yaml
schemas/framework/src/configuration/examples/beaconConfiguration-example.yaml
schemas/framework/src/configuration/examples/beaconConfigurationFilteringTerms-example.yaml
schemas/framework/src/configuration/examples/beaconMap-MIN-example.yaml
schemas/framework/src/configuration/examples/beaconMap-example.yaml
schemas/framework/src/configuration/examples/entriesCollectionDefinition_MIN_example.yaml
schemas/framework/src/configuration/examples/entriesCollectionDefinition_example.yaml
schemas/framework/src/configuration/examples/entryTypeDefinition-MIN-example.yaml
schemas/framework/src/requests/beaconRequestBody.yaml
schemas/framework/src/requests/beaconRequestMeta.yaml
schemas/framework/src/requests/filteringTerms.yaml
schemas/framework/src/requests/requestParameters.yaml
schemas/framework/src/requests/examples-fullDocuments/beaconRequestBody-MAX-example.yaml
schemas/framework/src/requests/examples-fullDocuments/beaconRequestBody-MIN-example.yaml
schemas/framework/src/requests/examples-sections/beaconRequestMeta-example.yaml
schemas/framework/src/requests/examples-sections/filteringTerms-example.yaml
schemas/framework/src/requests/examples-sections/requestParameters-example.yaml
schemas/framework/src/requests/validation/filteringTerms.yaml
schemas/framework/src/responses/beaconBooleanResponse.yaml
schemas/framework/src/responses/beaconCollectionsResponse.yaml
schemas/framework/src/responses/beaconConfigurationResponse.yaml
schemas/framework/src/responses/beaconCountResponse.yaml
schemas/framework/src/responses/beaconEntryTypesResponse.yaml
schemas/framework/src/responses/beaconErrorResponse.yaml
schemas/framework/src/responses/beaconFilteringTermsResponse.yaml
schemas/framework/src/responses/beaconInfoResponse.yaml
schemas/framework/src/responses/beaconMapResponse.yaml
schemas/framework/src/responses/beaconResultsetsResponse.yaml
schemas/framework/src/responses/ga4gh-service-info-1-0-0-schema.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconBooleanResponse-example.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconCollectionsResponse-MID-example.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconCollectionsResponse-MIN-example.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconConfigurationResponse-example.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconCountResponse-example.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconEntryTypesResponse-example.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconErrorResponse_example.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconFilteringTermsResponse-example.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconInfo-MAX-example.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconInfo-MIN-example.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconMapResponse-example.yaml
schemas/framework/src/responses/examples-fullDocuments/beaconResultsetResponse-MIN-example.yaml
schemas/framework/src/responses/examples-sections/beaconBooleanResponseSection-example.yaml
schemas/framework/src/responses/examples-sections/beaconCountResponseSection-example.yaml
schemas/framework/src/responses/examples-sections/beaconInformationalResponseMeta-example.yaml
schemas/framework/src/responses/examples-sections/beaconReceivedRequestSummary-MAX-example.yaml
schemas/framework/src/responses/examples-sections/beaconReceivedRequestSummary-MIN-example.yaml
schemas/framework/src/responses/examples-sections/beaconResponseMeta-example.yaml
schemas/framework/src/responses/examples-sections/beaconResultsetEmpty-example.yaml
schemas/framework/src/responses/examples-sections/beaconResultsets-MAX-example.yaml
schemas/framework/src/responses/examples-sections/beaconResultsets-MID-example.yaml
schemas/framework/src/responses/examples-sections/beaconResultsets-MIN-example.yaml
schemas/framework/src/responses/sections/beaconBooleanResponseSection.yaml
schemas/framework/src/responses/sections/beaconCountResponseSection.yaml
schemas/framework/src/responses/sections/beaconFilteringTermsResults.yaml
schemas/framework/src/responses/sections/beaconInfoResults.yaml
schemas/framework/src/responses/sections/beaconInformationalResponseMeta.yaml
schemas/framework/src/responses/sections/beaconReceivedRequestSummary.yaml
schemas/framework/src/responses/sections/beaconResponseMeta.yaml
schemas/framework/src/responses/sections/beaconResultsets.yaml
schemas/framework/src/responses/sections/beaconSummaryResponseSection.yaml
schemas/models/.DS_Store
schemas/models/json/beacon-v2-default-model/beaconConfiguration.json
schemas/models/json/beacon-v2-default-model/beaconMap.json
schemas/models/json/beacon-v2-default-model/endpoints.json
schemas/models/json/beacon-v2-default-model/analyses/defaultSchema.json
schemas/models/json/beacon-v2-default-model/analyses/endpoints.json
schemas/models/json/beacon-v2-default-model/analyses/filteringTerms.json
schemas/models/json/beacon-v2-default-model/analyses/examples/analyses-MAX-example.json
schemas/models/json/beacon-v2-default-model/analyses/examples/analyses-MIN-example.json
schemas/models/json/beacon-v2-default-model/biosamples/defaultSchema.json
schemas/models/json/beacon-v2-default-model/biosamples/endpoints.json
schemas/models/json/beacon-v2-default-model/biosamples/filteringTerms.json
schemas/models/json/beacon-v2-default-model/biosamples/examples/biosample-MID-example.json
schemas/models/json/beacon-v2-default-model/biosamples/examples/biosample-MIN-example.json
schemas/models/json/beacon-v2-default-model/cohorts/defaultSchema.json
schemas/models/json/beacon-v2-default-model/cohorts/endpoints.json
schemas/models/json/beacon-v2-default-model/cohorts/filteringTerms.json
schemas/models/json/beacon-v2-default-model/cohorts/examples/cohorts-MAX-example.json
schemas/models/json/beacon-v2-default-model/cohorts/examples/cohorts-MID-example.json
schemas/models/json/beacon-v2-default-model/cohorts/examples/cohorts-MIN-example.json
schemas/models/json/beacon-v2-default-model/common/age.json
schemas/models/json/beacon-v2-default-model/common/ageRange.json
schemas/models/json/beacon-v2-default-model/common/commonDefinitions.json
schemas/models/json/beacon-v2-default-model/common/complexValue.json
schemas/models/json/beacon-v2-default-model/common/dataUseConditions.json
schemas/models/json/beacon-v2-default-model/common/disease.json
schemas/models/json/beacon-v2-default-model/common/doseInterval.json
schemas/models/json/beacon-v2-default-model/common/evidence.json
schemas/models/json/beacon-v2-default-model/common/exposure.json
schemas/models/json/beacon-v2-default-model/common/externalReference.json
schemas/models/json/beacon-v2-default-model/common/gestationalAge.json
schemas/models/json/beacon-v2-default-model/common/measurement.json
schemas/models/json/beacon-v2-default-model/common/pedigree.json
schemas/models/json/beacon-v2-default-model/common/phenotypicFeature.json
schemas/models/json/beacon-v2-default-model/common/procedure.json
schemas/models/json/beacon-v2-default-model/common/quantity.json
schemas/models/json/beacon-v2-default-model/common/referenceRange.json
schemas/models/json/beacon-v2-default-model/common/timeElement.json
schemas/models/json/beacon-v2-default-model/common/timeInterval.json
schemas/models/json/beacon-v2-default-model/common/treatment.json
schemas/models/json/beacon-v2-default-model/common/value.json
schemas/models/json/beacon-v2-default-model/datasets/defaultSchema.json
schemas/models/json/beacon-v2-default-model/datasets/endpoints.json
schemas/models/json/beacon-v2-default-model/datasets/filteringTerms.json
schemas/models/json/beacon-v2-default-model/datasets/examples/dataset-MIN-example.json
schemas/models/json/beacon-v2-default-model/datasets/examples/dataset-Max-example.json
schemas/models/json/beacon-v2-default-model/genomicVariations/defaultSchema.json
schemas/models/json/beacon-v2-default-model/genomicVariations/endpoints.json
schemas/models/json/beacon-v2-default-model/genomicVariations/filteringTerms.json
schemas/models/json/beacon-v2-default-model/genomicVariations/requestParameters.json
schemas/models/json/beacon-v2-default-model/genomicVariations/requestParametersComponents.json
schemas/models/json/beacon-v2-default-model/genomicVariations/examples/genomicVariant-MID-example.json
schemas/models/json/beacon-v2-default-model/genomicVariations/examples/genomicVariant-MIN-VRS-example.json
schemas/models/json/beacon-v2-default-model/genomicVariations/examples/genomicVariant-MIN-example.json
schemas/models/json/beacon-v2-default-model/individuals/defaultSchema.json
schemas/models/json/beacon-v2-default-model/individuals/endpoints.json
schemas/models/json/beacon-v2-default-model/individuals/filteringTerms.json
schemas/models/json/beacon-v2-default-model/individuals/examples/individual-MID-example.json
schemas/models/json/beacon-v2-default-model/individuals/examples/individual-MIN-example.json
schemas/models/json/beacon-v2-default-model/individuals/examples/individual-with-pedigree-MID-example.json
schemas/models/json/beacon-v2-default-model/individuals/examples/pedigree-example.json
schemas/models/json/beacon-v2-default-model/runs/defaultSchema.json
schemas/models/json/beacon-v2-default-model/runs/endpoints.json
schemas/models/json/beacon-v2-default-model/runs/filteringTerms.json
schemas/models/json/beacon-v2-default-model/runs/examples/runs-MAX-example.json
schemas/models/json/beacon-v2-default-model/runs/examples/runs-MIN-example.json
schemas/models/json/framework/endpoints.json
schemas/models/json/progenetix-database-schemas/pgxBiosample.json
schemas/models/json/progenetix-database-schemas/pgxCallset.json
schemas/models/json/progenetix-database-schemas/pgxCollation.json
schemas/models/json/progenetix-database-schemas/pgxIndividual.json
schemas/models/json/progenetix-database-schemas/pgxVariant.json
schemas/models/json/progenetix-model/beaconConfiguration.json
schemas/models/json/progenetix-model/beaconMap.json
schemas/models/json/progenetix-model/endpoints.json
schemas/models/json/progenetix-model/analyses/defaultSchema.json
schemas/models/json/progenetix-model/analyses/endpoints.json
schemas/models/json/progenetix-model/analyses/filteringTerms.json
schemas/models/json/progenetix-model/analyses/examples/analyses-MAX-example.json
schemas/models/json/progenetix-model/analyses/examples/analyses-MIN-example.json
schemas/models/json/progenetix-model/biosamples/defaultSchema.json
schemas/models/json/progenetix-model/biosamples/endpoints.json
schemas/models/json/progenetix-model/biosamples/filteringTerms.json
schemas/models/json/progenetix-model/biosamples/examples/biosample-MID-example.json
schemas/models/json/progenetix-model/biosamples/examples/biosample-MIN-example.json
schemas/models/json/progenetix-model/cohorts/defaultSchema.json
schemas/models/json/progenetix-model/cohorts/endpoints.json
schemas/models/json/progenetix-model/cohorts/filteringTerms.json
schemas/models/json/progenetix-model/cohorts/examples/cohorts-MAX-example.json
schemas/models/json/progenetix-model/cohorts/examples/cohorts-MID-example.json
schemas/models/json/progenetix-model/cohorts/examples/cohorts-MIN-example.json
schemas/models/json/progenetix-model/common/GeoLocation.json
schemas/models/json/progenetix-model/common/age.json
schemas/models/json/progenetix-model/common/ageRange.json
schemas/models/json/progenetix-model/common/ancestry.json
schemas/models/json/progenetix-model/common/commonDefinitions.json
schemas/models/json/progenetix-model/common/complexValue.json
schemas/models/json/progenetix-model/common/dataUseConditions.json
schemas/models/json/progenetix-model/common/disease.json
schemas/models/json/progenetix-model/common/doseInterval.json
schemas/models/json/progenetix-model/common/evidence.json
schemas/models/json/progenetix-model/common/exposure.json
schemas/models/json/progenetix-model/common/externalReference.json
schemas/models/json/progenetix-model/common/file.json
schemas/models/json/progenetix-model/common/gestationalAge.json
schemas/models/json/progenetix-model/common/measurement.json
schemas/models/json/progenetix-model/common/metaData.json
schemas/models/json/progenetix-model/common/ontologyTerm.json
schemas/models/json/progenetix-model/common/pedigree.json
schemas/models/json/progenetix-model/common/phenotypicFeature.json
schemas/models/json/progenetix-model/common/procedure.json
schemas/models/json/progenetix-model/common/provenance.json
schemas/models/json/progenetix-model/common/quantity.json
schemas/models/json/progenetix-model/common/referenceRange.json
schemas/models/json/progenetix-model/common/resource.json
schemas/models/json/progenetix-model/common/timeElement.json
schemas/models/json/progenetix-model/common/timeInterval.json
schemas/models/json/progenetix-model/common/treatment.json
schemas/models/json/progenetix-model/common/update.json
schemas/models/json/progenetix-model/common/value.json
schemas/models/json/progenetix-model/common/vitalStatus.json
schemas/models/json/progenetix-model/datasets/defaultSchema.json
schemas/models/json/progenetix-model/datasets/endpoints.json
schemas/models/json/progenetix-model/datasets/filteringTerms.json
schemas/models/json/progenetix-model/datasets/examples/dataset-MIN-example.json
schemas/models/json/progenetix-model/datasets/examples/dataset-Max-example.json
schemas/models/json/progenetix-model/genomicVariations/defaultSchema.json
schemas/models/json/progenetix-model/genomicVariations/endpoints.json
schemas/models/json/progenetix-model/genomicVariations/filteringTerms.json
schemas/models/json/progenetix-model/genomicVariations/requestParameters.json
schemas/models/json/progenetix-model/genomicVariations/requestParametersComponents.json
schemas/models/json/progenetix-model/genomicVariations/examples/genomicVariant-MID-example.json
schemas/models/json/progenetix-model/genomicVariations/examples/genomicVariant-MIN-VRS-example.json
schemas/models/json/progenetix-model/genomicVariations/examples/genomicVariant-MIN-example.json
schemas/models/json/progenetix-model/individuals/defaultSchema.json
schemas/models/json/progenetix-model/individuals/endpoints.json
schemas/models/json/progenetix-model/individuals/filteringTerms.json
schemas/models/json/progenetix-model/individuals/examples/individual-MID-example.json
schemas/models/json/progenetix-model/individuals/examples/individual-MIN-example.json
schemas/models/json/progenetix-model/individuals/examples/individual-with-pedigree-MID-example.json
schemas/models/json/progenetix-model/individuals/examples/pedigree-example.json
schemas/models/json/progenetix-model/phenopackets/defaultSchema.json
schemas/models/json/progenetix-model/phenopackets/endpoints.json
schemas/models/json/progenetix-model/runs/defaultSchema.json
schemas/models/json/progenetix-model/runs/endpoints.json
schemas/models/json/progenetix-model/runs/filteringTerms.json
schemas/models/json/progenetix-model/runs/examples/runs-MAX-example.json
schemas/models/json/progenetix-model/runs/examples/runs-MIN-example.json
schemas/models/json/progenetix-service-schemas/GeoJSONgeometry.json
schemas/models/json/progenetix-service-schemas/GeoLabels.json
schemas/models/json/progenetix-service-schemas/GeoLocation.json
schemas/models/json/progenetix-service-schemas/IntervalFrequencies.json
schemas/models/json/progenetix-service-schemas/IntervalFrequencyItem.json
schemas/models/json/progenetix-service-schemas/OntologyClass.json
schemas/models/json/progenetix-service-schemas/OntologyClassGroup.json
schemas/models/json/progenetix-service-schemas/Progenetix.json
schemas/models/json/progenetix-service-schemas/ProgenetixGene.json
schemas/models/json/progenetix-service-schemas/Provenance.json
schemas/models/json/progenetix-service-schemas/Publication.json
schemas/models/json/progenetix-service-schemas/PublicationSampleCounts.json
schemas/models/json/progenetix-service-schemas/QueryBufferItem.json
schemas/models/json/progenetix-service-schemas/cytobandMapping.json
schemas/models/json/progenetix-service-schemas/progenetixServiceResponse.json
schemas/models/json/progenetix-service-schemas/progenetixServiceResponseMeta.json
schemas/models/json/progenetix-service-schemas/progenetixServiceResponseSummary.json
schemas/models/src/README.md
schemas/models/src/beacon-v2-default-model/beaconConfiguration.yaml
schemas/models/src/beacon-v2-default-model/beaconMap.yaml
schemas/models/src/beacon-v2-default-model/endpoints.yaml
schemas/models/src/beacon-v2-default-model/analyses/defaultSchema.yaml
schemas/models/src/beacon-v2-default-model/analyses/endpoints.yaml
schemas/models/src/beacon-v2-default-model/analyses/filteringTerms.yaml
schemas/models/src/beacon-v2-default-model/analyses/examples/analyses-MAX-example.yaml
schemas/models/src/beacon-v2-default-model/analyses/examples/analyses-MIN-example.yaml
schemas/models/src/beacon-v2-default-model/biosamples/defaultSchema.yaml
schemas/models/src/beacon-v2-default-model/biosamples/endpoints.yaml
schemas/models/src/beacon-v2-default-model/biosamples/filteringTerms.yaml
schemas/models/src/beacon-v2-default-model/biosamples/examples/biosample-MID-example.yaml
schemas/models/src/beacon-v2-default-model/biosamples/examples/biosample-MIN-example.yaml
schemas/models/src/beacon-v2-default-model/cohorts/defaultSchema.yaml
schemas/models/src/beacon-v2-default-model/cohorts/endpoints.yaml
schemas/models/src/beacon-v2-default-model/cohorts/filteringTerms.yaml
schemas/models/src/beacon-v2-default-model/cohorts/examples/cohorts-MAX-example.yaml
schemas/models/src/beacon-v2-default-model/cohorts/examples/cohorts-MID-example.yaml
schemas/models/src/beacon-v2-default-model/cohorts/examples/cohorts-MIN-example.yaml
schemas/models/src/beacon-v2-default-model/common/age.yaml
schemas/models/src/beacon-v2-default-model/common/ageRange.yaml
schemas/models/src/beacon-v2-default-model/common/commonDefinitions.yaml
schemas/models/src/beacon-v2-default-model/common/complexValue.yaml
schemas/models/src/beacon-v2-default-model/common/dataUseConditions.yaml
schemas/models/src/beacon-v2-default-model/common/disease.yaml
schemas/models/src/beacon-v2-default-model/common/doseInterval.yaml
schemas/models/src/beacon-v2-default-model/common/evidence.yaml
schemas/models/src/beacon-v2-default-model/common/exposure.yaml
schemas/models/src/beacon-v2-default-model/common/externalReference.yaml
schemas/models/src/beacon-v2-default-model/common/gestationalAge.yaml
schemas/models/src/beacon-v2-default-model/common/measurement.yaml
schemas/models/src/beacon-v2-default-model/common/pedigree.yaml
schemas/models/src/beacon-v2-default-model/common/phenotypicFeature.yaml
schemas/models/src/beacon-v2-default-model/common/procedure.yaml
schemas/models/src/beacon-v2-default-model/common/quantity.yaml
schemas/models/src/beacon-v2-default-model/common/referenceRange.yaml
schemas/models/src/beacon-v2-default-model/common/timeElement.yaml
schemas/models/src/beacon-v2-default-model/common/timeInterval.yaml
schemas/models/src/beacon-v2-default-model/common/treatment.yaml
schemas/models/src/beacon-v2-default-model/common/value.yaml
schemas/models/src/beacon-v2-default-model/datasets/defaultSchema.yaml
schemas/models/src/beacon-v2-default-model/datasets/endpoints.yaml
schemas/models/src/beacon-v2-default-model/datasets/filteringTerms.yaml
schemas/models/src/beacon-v2-default-model/datasets/examples/dataset-MIN-example.yaml
schemas/models/src/beacon-v2-default-model/datasets/examples/dataset-Max-example.yaml
schemas/models/src/beacon-v2-default-model/genomicVariations/defaultSchema.yaml
schemas/models/src/beacon-v2-default-model/genomicVariations/endpoints.yaml
schemas/models/src/beacon-v2-default-model/genomicVariations/filteringTerms.yaml
schemas/models/src/beacon-v2-default-model/genomicVariations/requestParameters.yaml
schemas/models/src/beacon-v2-default-model/genomicVariations/requestParametersComponents.yaml
schemas/models/src/beacon-v2-default-model/genomicVariations/examples/genomicVariant-MID-example.yaml
schemas/models/src/beacon-v2-default-model/genomicVariations/examples/genomicVariant-MIN-VRS-example.yaml
schemas/models/src/beacon-v2-default-model/genomicVariations/examples/genomicVariant-MIN-example.yaml
schemas/models/src/beacon-v2-default-model/individuals/defaultSchema.yaml
schemas/models/src/beacon-v2-default-model/individuals/endpoints.yaml
schemas/models/src/beacon-v2-default-model/individuals/filteringTerms.yaml
schemas/models/src/beacon-v2-default-model/individuals/examples/individual-MID-example.yaml
schemas/models/src/beacon-v2-default-model/individuals/examples/individual-MIN-example.yaml
schemas/models/src/beacon-v2-default-model/individuals/examples/individual-with-pedigree-MID-example.yaml
schemas/models/src/beacon-v2-default-model/individuals/examples/pedigree-example.yaml
schemas/models/src/beacon-v2-default-model/runs/defaultSchema.yaml
schemas/models/src/beacon-v2-default-model/runs/endpoints.yaml
schemas/models/src/beacon-v2-default-model/runs/filteringTerms.yaml
schemas/models/src/beacon-v2-default-model/runs/examples/runs-MAX-example.yaml
schemas/models/src/beacon-v2-default-model/runs/examples/runs-MIN-example.yaml
schemas/models/src/framework/endpoints.yaml
schemas/models/src/progenetix-database-schemas/pgxBiosample.yaml
schemas/models/src/progenetix-database-schemas/pgxCallset.yaml
schemas/models/src/progenetix-database-schemas/pgxCollation.yaml
schemas/models/src/progenetix-database-schemas/pgxIndividual.yaml
schemas/models/src/progenetix-database-schemas/pgxVariant.yaml
schemas/models/src/progenetix-model/beaconConfiguration.yaml
schemas/models/src/progenetix-model/beaconMap.yaml
schemas/models/src/progenetix-model/endpoints.yaml
schemas/models/src/progenetix-model/analyses/defaultSchema.yaml
schemas/models/src/progenetix-model/analyses/endpoints.yaml
schemas/models/src/progenetix-model/analyses/filteringTerms.yaml
schemas/models/src/progenetix-model/analyses/examples/analyses-MAX-example.yaml
schemas/models/src/progenetix-model/analyses/examples/analyses-MIN-example.yaml
schemas/models/src/progenetix-model/biosamples/defaultSchema.yaml
schemas/models/src/progenetix-model/biosamples/endpoints.yaml
schemas/models/src/progenetix-model/biosamples/filteringTerms.yaml
schemas/models/src/progenetix-model/biosamples/examples/biosample-MID-example.yaml
schemas/models/src/progenetix-model/biosamples/examples/biosample-MIN-example.yaml
schemas/models/src/progenetix-model/cohorts/defaultSchema.yaml
schemas/models/src/progenetix-model/cohorts/endpoints.yaml
schemas/models/src/progenetix-model/cohorts/filteringTerms.yaml
schemas/models/src/progenetix-model/cohorts/examples/cohorts-MAX-example.yaml
schemas/models/src/progenetix-model/cohorts/examples/cohorts-MID-example.yaml
schemas/models/src/progenetix-model/cohorts/examples/cohorts-MIN-example.yaml
schemas/models/src/progenetix-model/common/GeoLocation.yaml
schemas/models/src/progenetix-model/common/age.yaml
schemas/models/src/progenetix-model/common/ageRange.yaml
schemas/models/src/progenetix-model/common/ancestry.yaml
schemas/models/src/progenetix-model/common/commonDefinitions.yaml
schemas/models/src/progenetix-model/common/complexValue.yaml
schemas/models/src/progenetix-model/common/dataUseConditions.yaml
schemas/models/src/progenetix-model/common/disease.yaml
schemas/models/src/progenetix-model/common/doseInterval.yaml
schemas/models/src/progenetix-model/common/evidence.yaml
schemas/models/src/progenetix-model/common/exposure.yaml
schemas/models/src/progenetix-model/common/externalReference.yaml
schemas/models/src/progenetix-model/common/file.yaml
schemas/models/src/progenetix-model/common/gestationalAge.yaml
schemas/models/src/progenetix-model/common/measurement.yaml
schemas/models/src/progenetix-model/common/metaData.yaml
schemas/models/src/progenetix-model/common/ontologyTerm.yaml
schemas/models/src/progenetix-model/common/pedigree.yaml
schemas/models/src/progenetix-model/common/phenotypicFeature.yaml
schemas/models/src/progenetix-model/common/procedure.yaml
schemas/models/src/progenetix-model/common/provenance.yaml
schemas/models/src/progenetix-model/common/quantity.yaml
schemas/models/src/progenetix-model/common/referenceRange.yaml
schemas/models/src/progenetix-model/common/resource.yaml
schemas/models/src/progenetix-model/common/timeElement.yaml
schemas/models/src/progenetix-model/common/timeInterval.yaml
schemas/models/src/progenetix-model/common/treatment.yaml
schemas/models/src/progenetix-model/common/update.yaml
schemas/models/src/progenetix-model/common/value.yaml
schemas/models/src/progenetix-model/common/vitalStatus.yaml
schemas/models/src/progenetix-model/datasets/defaultSchema.yaml
schemas/models/src/progenetix-model/datasets/endpoints.yaml
schemas/models/src/progenetix-model/datasets/filteringTerms.yaml
schemas/models/src/progenetix-model/datasets/examples/dataset-MIN-example.yaml
schemas/models/src/progenetix-model/datasets/examples/dataset-Max-example.yaml
schemas/models/src/progenetix-model/genomicVariations/defaultSchema.yaml
schemas/models/src/progenetix-model/genomicVariations/endpoints.yaml
schemas/models/src/progenetix-model/genomicVariations/filteringTerms.yaml
schemas/models/src/progenetix-model/genomicVariations/requestParameters.yaml
schemas/models/src/progenetix-model/genomicVariations/requestParametersComponents.yaml
schemas/models/src/progenetix-model/genomicVariations/examples/genomicVariant-MID-example.yaml
schemas/models/src/progenetix-model/genomicVariations/examples/genomicVariant-MIN-VRS-example.yaml
schemas/models/src/progenetix-model/genomicVariations/examples/genomicVariant-MIN-example.yaml
schemas/models/src/progenetix-model/individuals/defaultSchema.yaml
schemas/models/src/progenetix-model/individuals/endpoints.yaml
schemas/models/src/progenetix-model/individuals/filteringTerms.yaml
schemas/models/src/progenetix-model/individuals/examples/individual-MID-example.yaml
schemas/models/src/progenetix-model/individuals/examples/individual-MIN-example.yaml
schemas/models/src/progenetix-model/individuals/examples/individual-with-pedigree-MID-example.yaml
schemas/models/src/progenetix-model/individuals/examples/pedigree-example.yaml
schemas/models/src/progenetix-model/phenopackets/defaultSchema.yaml
schemas/models/src/progenetix-model/phenopackets/endpoints.yaml
schemas/models/src/progenetix-model/runs/defaultSchema.yaml
schemas/models/src/progenetix-model/runs/endpoints.yaml
schemas/models/src/progenetix-model/runs/filteringTerms.yaml
schemas/models/src/progenetix-model/runs/examples/runs-MAX-example.yaml
schemas/models/src/progenetix-model/runs/examples/runs-MIN-example.yaml
schemas/models/src/progenetix-service-schemas/GeoJSONgeometry.yaml
schemas/models/src/progenetix-service-schemas/GeoLabels.yaml
schemas/models/src/progenetix-service-schemas/GeoLocation.yaml
schemas/models/src/progenetix-service-schemas/IntervalFrequencies.yaml
schemas/models/src/progenetix-service-schemas/IntervalFrequencyItem.yaml
schemas/models/src/progenetix-service-schemas/OntologyClass.yaml
schemas/models/src/progenetix-service-schemas/OntologyClassGroup.yaml
schemas/models/src/progenetix-service-schemas/Progenetix.yaml
schemas/models/src/progenetix-service-schemas/ProgenetixGene.yaml
schemas/models/src/progenetix-service-schemas/Provenance.yaml
schemas/models/src/progenetix-service-schemas/Publication.yaml
schemas/models/src/progenetix-service-schemas/PublicationSampleCounts.yaml
schemas/models/src/progenetix-service-schemas/QueryBufferItem.yaml
schemas/models/src/progenetix-service-schemas/cytobandMapping.yaml
schemas/models/src/progenetix-service-schemas/progenetixServiceResponse.yaml
schemas/models/src/progenetix-service-schemas/progenetixServiceResponseMeta.yaml
schemas/models/src/progenetix-service-schemas/progenetixServiceResponseSummary.yaml
services/__init__.py
services/collations.py
services/cytomapper.py
services/dbstats.py
services/endpoints.py
services/genespans.py
services/geolocations.py
services/ids.py
services/intervalFrequencies.py
services/ontologymaps.py
services/publications.py
services/schemas.py
services/services.py
services/uploader.py
services/lib/__init__.py