"""
Utility modules for bvalcalc.
"""
# Argument parsers
from .parseArgs import parse_args, parseGenomeArgs, parseRegionArgs, parseGeneArgs, parseSiteArgs
# Parameter generation
from .generateParams import SPECIES, generateParams
# File and map handlers
from .load_bed_gff     import load_bed_gff
from .bin_outputs import bin_outputs
from .load_chr_sizes   import load_chr_sizes
from .load_rec_map     import load_rec_map
from .load_Bmap       import load_Bmap
# Sample data utilities
from .sample_data import download_sample_data, get_sample_data_dir
# DFE utilities
from . import dfe_helper

__all__ = [
    # parsers
   "parse_args", "parseGenomeArgs", "parseRegionArgs", "parseGeneArgs", "parseSiteArgs",
    # params
    "SPECIES", "generateParams",
    # handlers
    "load_bed_gff", "bin_outputs", "load_chr_sizes", "load_rec_map", "load_Bmap",
    # sample data
    "download_sample_data", "get_sample_data_dir",
    # DFE utilities
    "dfe_helper",
]