numpy
pandas
scipy
matplotlib
anndata
seaborn
scikit-learn
statsmodels
gseapy
lifelines
nbsphinx

[dev]
pytest
ruff
black
build
twine

[docs]
sphinx<8,>=7
pydata-sphinx-theme>=0.15
myst-parser<4,>=2
myst-nb<1.3,>=1.1
sphinx-autodoc-typehints
sphinx-copybutton>=0.5
sphinx-design>=0.6
ipython

[leiden]
igraph
leidenalg

[umap]
umap-learn
