from .pca import pca, pca_loadings
from .neighbors import neighbors
from .clustering import cluster
from .umap import umap, umap_graph
from .de import de
from .de_glm import de_glm
from .rank_genes_groups import rank_genes_groups
from .adjusted_rand_index import adjusted_rand_index
from .cluster_metrics import cluster_metrics
from .leiden_scan import leiden_resolution_scan
from .score_genes import score_genes, score_genes_dict, score_genes_cell_cycle
from .correlations import (
    top_gene_gene_correlations, gene_gene_correlations,
    top_gene_obs_correlations, top_obs_obs_correlations, 
    obs_obs_corr_matrix, partial_corr,
    plot_corr_scatter, plot_corr_heatmap,
    )
from .association import (categorical_association, association,)
from .association_posthoc import pairwise_posthoc

from .categorical_association import (
    gene_categorical_association,
    obs_categorical_association,
    cat_cat_association,
    )
from .associations import rank_genes_categorical, posthoc_per_gene
from .posthoc import pairwise_posthoc
#from .gsea import pre_res_from_gseapy
from .gsea_prerank import gsea_preranked, list_enrichr_libraries

__all__ = ["pca", "neighbors", "cluster", "umap",
           "umap_graph", "de", "de_glm", "pca_loadings",
           "rank_genes_groups", "adjusted_rand_index",
           "cluster_metrics", "leiden_resolution_scan",
           "score_genes", "score_genes_dict", "score_genes_cell_cycle",
           "top_gene_gene_correlations", "top_gene_obs_correlations",
           "top_obs_obs_correlations", "gene_gene_correlations",
           "obs_obs_corr_matrix", "partial_corr",
           "plot_corr_scatter", "plot_corr_heatmap",
           "gene_categorical_association", "obs_categorical_association",
           "categorical_association", "association", "pairwise_posthoc",
           "cat_cat_association",
           "rank_genes_categorical", "posthoc_per_gene", "pairwise_posthoc",
           "gsea_preranked", "list_enrichr_libraries",
]