.gitignore
.pre-commit-config.yaml
.readthedocs.yaml
CHANGELOG.rst
LICENSE.md
MANIFEST.in
Makefile
README.md
build.sh
codecov.yml
environment.yml
pyproject.toml
requirements.txt
.github/workflows/deploy.yml
.github/workflows/linting.yml
.github/workflows/napari-hub-preview.yml
.github/workflows/test.yml
.github/workflows/update_project_board.yml
.napari-hub/DESCRIPTION.md
.napari-hub/config.yml
btrack/__init__.py
btrack/_version.py
btrack/btypes.py
btrack/config.py
btrack/constants.py
btrack/core.py
btrack/dataio.py
btrack/datasets.py
btrack/libwrapper.py
btrack/models.py
btrack/napari.yaml
btrack/utils.py
btrack.egg-info/PKG-INFO
btrack.egg-info/SOURCES.txt
btrack.egg-info/dependency_links.txt
btrack.egg-info/entry_points.txt
btrack.egg-info/requires.txt
btrack.egg-info/top_level.txt
btrack/include/bayes.h
btrack/include/belief.h
btrack/include/defs.h
btrack/include/hyperbin.h
btrack/include/hypothesis.h
btrack/include/inference.h
btrack/include/manager.h
btrack/include/motion.h
btrack/include/pdf.h
btrack/include/tracker.h
btrack/include/tracklet.h
btrack/include/types.h
btrack/include/updates.h
btrack/include/wrapper.h
btrack/io/__init__.py
btrack/io/_localization.py
btrack/io/exporters.py
btrack/io/hdf.py
btrack/io/importers.py
btrack/io/utils.py
btrack/libs/libtracker.so
btrack/napari/__init__.py
btrack/napari/config.py
btrack/napari/constants.py
btrack/napari/main.py
btrack/napari/reader.py
btrack/napari/sync.py
btrack/napari/examples/show_btrack_widget.py
btrack/napari/widgets/__init__.py
btrack/napari/widgets/_general.py
btrack/napari/widgets/_hypothesis.py
btrack/napari/widgets/_motion.py
btrack/napari/widgets/create_ui.py
btrack/napari/widgets/io.py
btrack/optimise/__init__.py
btrack/optimise/hypothesis.py
btrack/optimise/optimiser.py
btrack/src/bayes.cc
btrack/src/belief.cu
btrack/src/hyperbin.cc
btrack/src/hypothesis.cc
btrack/src/inference.cc
btrack/src/interface.cc
btrack/src/manager.cc
btrack/src/motion.cc
btrack/src/pdf.cc
btrack/src/tracker.cc
btrack/src/tracklet.cc
btrack/src/wrapper.cc
docs/Makefile
docs/about.rst
docs/api.rst
docs/conf.py
docs/index.rst
docs/make.bat
docs/_static/btrack_logo.png
docs/dev_guide/index.rst
docs/user_guide/configuration.rst
docs/user_guide/index.rst
docs/user_guide/installation.rst
docs/user_guide/large_datasets.rst
docs/user_guide/napari.rst
docs/user_guide/saving_tracks.rst
docs/user_guide/simple_example.rst
docs/user_guide/using_features.rst
examples/README.md
examples/example_tracking_pipeline-features.ipynb
examples/example_tracking_pipeline.ipynb
models/cell_config.json
models/cell_config_flat.json
models/particle_config.json
tests/__init__.py
tests/_utils.py
tests/conftest.py
tests/test_config.py
tests/test_examples.py
tests/test_io.py
tests/test_models.py
tests/test_tracker.py
tests/test_tracklets.py
tests/test_utils.py
tests/_test_data/test_data.csv
tests/_test_data/test_graph.json
tests/_test_data/test_ground_truth.json
tests/napari/test_dock_widget.py
tests/napari/test_reader.py