README.md
setup.py
broonie/__init__.py
broonie/construct_initial_guess.py
broonie/construct_simulated_dataset.py
broonie/generate_neighbor_matrix.py
broonie/project_group.py
broonie/project_group_sog.py
broonie/regress.py
broonie/runPipelineNewalgorithm.py
broonie.egg-info/PKG-INFO
broonie.egg-info/SOURCES.txt
broonie.egg-info/dependency_links.txt
broonie.egg-info/not-zip-safe
broonie.egg-info/requires.txt
broonie.egg-info/top_level.txt
broonie/covariate_projection_reduction/__init__.py
broonie/covariate_projection_reduction/dense.py
broonie/covariate_projection_reduction/s_svd.py
broonie/covariate_projection_reduction/sparse.py
broonie/mergeMetadataToData/__init__.py
broonie/mergeMetadataToData/dcaData_builddata.py
broonie/mergeMetadataToData/rawData_builddata.py
broonie/mergeMetadataToData/regressedData_builddata_allphenotypes.py
broonie/tests/__init__.py
broonie/tests/runPipelineNewalgorithm.py
broonie/tests/run_builddatasets.py
broonie/tests/run_cluster.py
broonie/tests/run_pipeline.py
broonie/tests/run_pipeline_newalgorithm.py
broonie/tests/run_pipeline_reconstructedX.py
broonie/tests/run_project.py
broonie/tests/run_project_sog.py
broonie/tests/run_regress.py