.gitignore
.pre-commit-config.yaml
LICENSE
README.md
pyproject.toml
pytest.ini
setup.cfg
setup.py
tox.ini
.github/workflows/test_and_deploy.yml
brainreg_segment/__init__.py
brainreg_segment/paths.py
brainreg_segment/plugins.py
brainreg_segment/segment.py
brainreg_segment.egg-info/PKG-INFO
brainreg_segment.egg-info/SOURCES.txt
brainreg_segment.egg-info/dependency_links.txt
brainreg_segment.egg-info/entry_points.txt
brainreg_segment.egg-info/not-zip-safe
brainreg_segment.egg-info/requires.txt
brainreg_segment.egg-info/top_level.txt
brainreg_segment/atlas/__init__.py
brainreg_segment/atlas/utils.py
brainreg_segment/image/__init__.py
brainreg_segment/image/utils.py
brainreg_segment/layout/__init__.py
brainreg_segment/layout/gui_constants.py
brainreg_segment/layout/gui_elements.py
brainreg_segment/layout/utils.py
brainreg_segment/measurement/__init__.py
brainreg_segment/measurement/measurement.py
brainreg_segment/measurement/random_layers.py
brainreg_segment/regions/IO.py
brainreg_segment/regions/__init__.py
brainreg_segment/regions/analysis.py
brainreg_segment/regions/layers.py
brainreg_segment/segmentation_panels/__init__.py
brainreg_segment/segmentation_panels/regions.py
brainreg_segment/segmentation_panels/tracks.py
brainreg_segment/tracks/IO.py
brainreg_segment/tracks/__init__.py
brainreg_segment/tracks/analysis.py
brainreg_segment/tracks/fit.py
brainreg_segment/tracks/layers.py
tests/conftest.py
tests/data/brainreg_output/boundaries.tiff
tests/data/brainreg_output/brainreg.json
tests/data/brainreg_output/downsampled.tiff
tests/data/brainreg_output/downsampled_standard.tiff
tests/data/brainreg_output/registered_atlas.tiff
tests/data/brainreg_output/registered_hemispheres.tiff
tests/data/brainreg_output/manual_segmentation/sample_space/regions/region_0.tiff
tests/data/brainreg_output/manual_segmentation/sample_space/regions/region_1.tiff
tests/data/brainreg_output/manual_segmentation/sample_space/tracks/track_0.csv
tests/data/brainreg_output/manual_segmentation/sample_space/tracks/track_0.points
tests/data/brainreg_output/manual_segmentation/sample_space/tracks/track_1.csv
tests/data/brainreg_output/manual_segmentation/sample_space/tracks/track_1.points
tests/data/brainreg_output/manual_segmentation/standard_space/regions/summary.csv
tests/data/brainreg_output/manual_segmentation/standard_space/regions/test_region.csv
tests/data/brainreg_output/manual_segmentation/standard_space/regions/test_region.obj
tests/data/brainreg_output/manual_segmentation/standard_space/regions/test_region.tiff
tests/data/brainreg_output/manual_segmentation/standard_space/tracks/test_track.csv
tests/data/brainreg_output/manual_segmentation/standard_space/tracks/test_track.h5
tests/data/brainreg_output/manual_segmentation/standard_space/tracks/test_track.points
tests/data/regions/region.obj
tests/data/regions/region.tiff
tests/data/tracks/track.csv
tests/data/tracks/track.npy
tests/data/tracks/track.points
tests/tests/test_integration/test_gui/test_gui.py
tests/tests/test_integration/test_tracks/test_track_analysis.py
tests/tests/test_unit/test_atlas/test_atlas_utils.py
tests/tests/test_unit/test_image/test_image_utils.py
tests/tests/test_unit/test_regions/test_region_IO.py
tests/tests/test_unit/test_tracks/test_track_IO.py
tests/tests/test_unit/test_tracks/test_track_analysis_tools.py