.gitignore
.pre-commit-config.yaml
LICENSE
README.md
pyproject.toml
tox.ini
.github/workflows/test_and_deploy.yml
brainglobe_utils/__init__.py
brainglobe_utils.egg-info/PKG-INFO
brainglobe_utils.egg-info/SOURCES.txt
brainglobe_utils.egg-info/dependency_links.txt
brainglobe_utils.egg-info/requires.txt
brainglobe_utils.egg-info/top_level.txt
brainglobe_utils/IO/__init__.py
brainglobe_utils/IO/cells.py
brainglobe_utils/IO/surfaces.py
brainglobe_utils/IO/yaml.py
brainglobe_utils/brainmapper/__init__.py
brainglobe_utils/brainmapper/analysis.py
brainglobe_utils/brainmapper/export.py
brainglobe_utils/brainreg/__init__.py
brainglobe_utils/brainreg/transform.py
brainglobe_utils/cells/__init__.py
brainglobe_utils/cells/cells.py
brainglobe_utils/general/__init__.py
brainglobe_utils/general/config.py
brainglobe_utils/general/exceptions.py
brainglobe_utils/general/list.py
brainglobe_utils/general/logging.py
brainglobe_utils/general/numerical.py
brainglobe_utils/general/pathlib.py
brainglobe_utils/general/string.py
brainglobe_utils/general/system.py
brainglobe_utils/image/__init__.py
brainglobe_utils/image/binning.py
brainglobe_utils/image/heatmap.py
brainglobe_utils/image/masking.py
brainglobe_utils/image/scale.py
brainglobe_utils/pandas/__init__.py
brainglobe_utils/pandas/misc.py
brainglobe_utils/qtpy/__init__.py
brainglobe_utils/qtpy/brainglobe.png
brainglobe_utils/qtpy/collapsible_widget.py
brainglobe_utils/qtpy/logo.py
tests/__init__.py
tests/data/IO/obj/test.obj
tests/data/IO/roi_sorter_output/Cell_220396_z358_y564_x4056
tests/data/IO/roi_sorter_output/Cell_220422_z367_y677_x4395
tests/data/IO/roi_sorter_output/Cell_220621_z439_y735_x4351
tests/data/IO/roi_sorter_output/Cell_221379_z570_y267_x3989
tests/data/brainmapper/region_totals.csv
tests/data/brainmapper/region_totals_regression_pandas1_5_3.csv
tests/data/brainmapper/volumes.csv
tests/data/cells/cells.xml
tests/data/cells/cells.yml
tests/data/cells/cells_two_types.xml
tests/data/cube_extract/cubes/pCellz10y522x392Ch0.tif
tests/data/cube_extract/cubes/pCellz10y522x392Ch1.tif
tests/data/cube_extract/cubes/pCellz15y1004x340Ch0.tif
tests/data/cube_extract/cubes/pCellz15y1004x340Ch1.tif
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tests/data/cubes/pCellz433y4425x7552Ch1.tif
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tests/data/general/jabberwocky.txt
tests/data/general/jabberwocky_sorted.txt
tests/data/image/heatmap.tif
tests/data/yaml/single_section.yml
tests/tests/__init__.py
tests/tests/test_IO/__init__.py
tests/tests/test_IO/test_cell_io.py
tests/tests/test_IO/test_surfaces.py
tests/tests/test_IO/test_yaml_io.py
tests/tests/test_brainmapper/__init__.py
tests/tests/test_brainmapper/test_analysis.py
tests/tests/test_cells/__init__.py
tests/tests/test_cells/test_cells.py
tests/tests/test_general/__init__.py
tests/tests/test_general/test_exceptions.py
tests/tests/test_general/test_list.py
tests/tests/test_general/test_numerical.py
tests/tests/test_general/test_pathlib.py
tests/tests/test_general/test_string.py
tests/tests/test_general/test_system.py
tests/tests/test_image/__init__.py
tests/tests/test_image/test_binning.py
tests/tests/test_image/test_heatmap.py
tests/tests/test_image/test_masking.py
tests/tests/test_image/test_scale.py
tests/tests/test_pandas/__init__.py
tests/tests/test_pandas/test_pandas_misc.py
tests/tests/test_qtpy/__init__.py
tests/tests/test_qtpy/test_collapsible_widget.py
tests/tests/test_qtpy/test_logo.py