LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
bpnet/BPNet.py
bpnet/__init__.py
bpnet/__main__.py
bpnet/activations.py
bpnet/configurables.py
bpnet/data.py
bpnet/datasets.py
bpnet/dataspecs.py
bpnet/extractors.py
bpnet/functions.py
bpnet/heads.py
bpnet/layers.py
bpnet/logging.conf
bpnet/losses.py
bpnet/metrics.py
bpnet/models.py
bpnet/preproc.py
bpnet/samplers.py
bpnet/seqmodel.py
bpnet/simulate.py
bpnet/stats.py
bpnet/trainers.py
bpnet/utils.py
bpnet.egg-info/PKG-INFO
bpnet.egg-info/SOURCES.txt
bpnet.egg-info/dependency_links.txt
bpnet.egg-info/entry_points.txt
bpnet.egg-info/not-zip-safe
bpnet.egg-info/requires.txt
bpnet.egg-info/top_level.txt
bpnet/cli/__init__.py
bpnet/cli/contrib.py
bpnet/cli/export_bw.py
bpnet/cli/modisco.py
bpnet/cli/train.py
bpnet/external/__init__.py
bpnet/external/deeplift/__init__.py
bpnet/external/deeplift/dinuc_shuffle.py
bpnet/modisco/__init__.py
bpnet/modisco/core.py
bpnet/modisco/files.py
bpnet/modisco/motif_clustering.py
bpnet/modisco/pattern_instances.py
bpnet/modisco/periodicity.py
bpnet/modisco/profile.py
bpnet/modisco/sliding_similarities.py
bpnet/modisco/table.py
bpnet/modisco/utils.py
bpnet/plot/__init__.py
bpnet/plot/evaluate.py
bpnet/plot/heatmaps.py
bpnet/plot/profiles.py
bpnet/plot/tracks.py
bpnet/plot/utils.py
bpnet/plot/vdom.py
bpnet/premade/bpnet9-ginspec.gin
bpnet/premade/bpnet9-pyspec.gin
bpnet/premade/bpnet9.gin
bpnet/premade/modisco-50k.gin
bpnet/templates/evaluate.ipynb
bpnet/templates/modisco-chip.ipynb
bpnet/templates/modisco.ipynb
bpnet/templates/.ipynb_checkpoints/evaluate-checkpoint.ipynb
bpnet/templates/.ipynb_checkpoints/modisco-checkpoint.ipynb
bpnet/templates/.ipynb_checkpoints/modisco-chip-checkpoint.ipynb
docs/Makefile
docs/README.md
tests/__init__.py
tests/configurables.py
tests/conftest.py
tests/test_contrib.py
tests/test_gin_parse.py
tests/test_seqmodel.py
tests/test_train.py
tests/cli/__init__.py
tests/cli/test_contrib.py
tests/cli/test_export_bw.py
tests/cli/test_modisco.py
tests/cli/test_train.py
tests/modisco/__init__.py
tests/modisco/test_core.py
tests/modisco/test_modisco_file.py
tests/modisco/test_pattern_instances.py
tests/plot/__init__.py
tests/plot/test_tracks.py