LICENSE
README.md
setup.py
bookend/__init__.py
bookend/__main__.py
bookend/core/argument_parsers.py
bookend/core/assemble.py
bookend/core/bam_to_elr.py
bookend/core/bed_to_elr.py
bookend/core/bedgraph.py
bookend/core/elr_combine.py
bookend/core/elr_condense.py
bookend/core/elr_simulate.py
bookend/core/elr_sort.py
bookend/core/elr_to_bed.py
bookend/core/fasta.py
bookend/core/fastq_end_label.py
bookend/core/gtf_classify.py
bookend/core/gtf_ends.py
bookend/core/gtf_merge.py
bookend/core/gtf_to_bed.py
bookend/core/sam_sj_out.py
bookend/core/sj_merge.py
bookend/core/sj_to_bed.py
bookend/core/cython_utils/_assembly_utils.c
bookend/core/cython_utils/_element_graph.c
bookend/core/cython_utils/_fasta_utils.c
bookend/core/cython_utils/_pq.c
bookend/core/cython_utils/_rnaseq_utils.c
bookend_rna.egg-info/PKG-INFO
bookend_rna.egg-info/SOURCES.txt
bookend_rna.egg-info/dependency_links.txt
bookend_rna.egg-info/entry_points.txt
bookend_rna.egg-info/requires.txt
bookend_rna.egg-info/top_level.txt