/* Generated by Cython 0.29.30 */

/* BEGIN: Cython Metadata
{
    "distutils": {
        "depends": [],
        "name": "_rnaseq_utils",
        "sources": [
            "_rnaseq_utils.pyx"
        ]
    },
    "module_name": "_rnaseq_utils"
}
END: Cython Metadata */

#ifndef PY_SSIZE_T_CLEAN
#define PY_SSIZE_T_CLEAN
#endif /* PY_SSIZE_T_CLEAN */
#include "Python.h"
#ifndef Py_PYTHON_H
    #error Python headers needed to compile C extensions, please install development version of Python.
#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000)
    #error Cython requires Python 2.6+ or Python 3.3+.
#else
#define CYTHON_ABI "0_29_30"
#define CYTHON_HEX_VERSION 0x001D1EF0
#define CYTHON_FUTURE_DIVISION 1
#include <stddef.h>
#ifndef offsetof
  #define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
#endif
#if !defined(WIN32) && !defined(MS_WINDOWS)
  #ifndef __stdcall
    #define __stdcall
  #endif
  #ifndef __cdecl
    #define __cdecl
  #endif
  #ifndef __fastcall
    #define __fastcall
  #endif
#endif
#ifndef DL_IMPORT
  #define DL_IMPORT(t) t
#endif
#ifndef DL_EXPORT
  #define DL_EXPORT(t) t
#endif
#define __PYX_COMMA ,
#ifndef HAVE_LONG_LONG
  #if PY_VERSION_HEX >= 0x02070000
    #define HAVE_LONG_LONG
  #endif
#endif
#ifndef PY_LONG_LONG
  #define PY_LONG_LONG LONG_LONG
#endif
#ifndef Py_HUGE_VAL
  #define Py_HUGE_VAL HUGE_VAL
#endif
#ifdef PYPY_VERSION
  #define CYTHON_COMPILING_IN_PYPY 1
  #define CYTHON_COMPILING_IN_PYSTON 0
  #define CYTHON_COMPILING_IN_CPYTHON 0
  #undef CYTHON_USE_TYPE_SLOTS
  #define CYTHON_USE_TYPE_SLOTS 0
  #undef CYTHON_USE_PYTYPE_LOOKUP
  #define CYTHON_USE_PYTYPE_LOOKUP 0
  #if PY_VERSION_HEX < 0x03050000
    #undef CYTHON_USE_ASYNC_SLOTS
    #define CYTHON_USE_ASYNC_SLOTS 0
  #elif !defined(CYTHON_USE_ASYNC_SLOTS)
    #define CYTHON_USE_ASYNC_SLOTS 1
  #endif
  #undef CYTHON_USE_PYLIST_INTERNALS
  #define CYTHON_USE_PYLIST_INTERNALS 0
  #undef CYTHON_USE_UNICODE_INTERNALS
  #define CYTHON_USE_UNICODE_INTERNALS 0
  #undef CYTHON_USE_UNICODE_WRITER
  #define CYTHON_USE_UNICODE_WRITER 0
  #undef CYTHON_USE_PYLONG_INTERNALS
  #define CYTHON_USE_PYLONG_INTERNALS 0
  #undef CYTHON_AVOID_BORROWED_REFS
  #define CYTHON_AVOID_BORROWED_REFS 1
  #undef CYTHON_ASSUME_SAFE_MACROS
  #define CYTHON_ASSUME_SAFE_MACROS 0
  #undef CYTHON_UNPACK_METHODS
  #define CYTHON_UNPACK_METHODS 0
  #undef CYTHON_FAST_THREAD_STATE
  #define CYTHON_FAST_THREAD_STATE 0
  #undef CYTHON_FAST_PYCALL
  #define CYTHON_FAST_PYCALL 0
  #undef CYTHON_PEP489_MULTI_PHASE_INIT
  #define CYTHON_PEP489_MULTI_PHASE_INIT 0
  #undef CYTHON_USE_TP_FINALIZE
  #define CYTHON_USE_TP_FINALIZE 0
  #undef CYTHON_USE_DICT_VERSIONS
  #define CYTHON_USE_DICT_VERSIONS 0
  #undef CYTHON_USE_EXC_INFO_STACK
  #define CYTHON_USE_EXC_INFO_STACK 0
  #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
    #define CYTHON_UPDATE_DESCRIPTOR_DOC (PYPY_VERSION_HEX >= 0x07030900)
  #endif
#elif defined(PYSTON_VERSION)
  #define CYTHON_COMPILING_IN_PYPY 0
  #define CYTHON_COMPILING_IN_PYSTON 1
  #define CYTHON_COMPILING_IN_CPYTHON 0
  #ifndef CYTHON_USE_TYPE_SLOTS
    #define CYTHON_USE_TYPE_SLOTS 1
  #endif
  #undef CYTHON_USE_PYTYPE_LOOKUP
  #define CYTHON_USE_PYTYPE_LOOKUP 0
  #undef CYTHON_USE_ASYNC_SLOTS
  #define CYTHON_USE_ASYNC_SLOTS 0
  #undef CYTHON_USE_PYLIST_INTERNALS
  #define CYTHON_USE_PYLIST_INTERNALS 0
  #ifndef CYTHON_USE_UNICODE_INTERNALS
    #define CYTHON_USE_UNICODE_INTERNALS 1
  #endif
  #undef CYTHON_USE_UNICODE_WRITER
  #define CYTHON_USE_UNICODE_WRITER 0
  #undef CYTHON_USE_PYLONG_INTERNALS
  #define CYTHON_USE_PYLONG_INTERNALS 0
  #ifndef CYTHON_AVOID_BORROWED_REFS
    #define CYTHON_AVOID_BORROWED_REFS 0
  #endif
  #ifndef CYTHON_ASSUME_SAFE_MACROS
    #define CYTHON_ASSUME_SAFE_MACROS 1
  #endif
  #ifndef CYTHON_UNPACK_METHODS
    #define CYTHON_UNPACK_METHODS 1
  #endif
  #undef CYTHON_FAST_THREAD_STATE
  #define CYTHON_FAST_THREAD_STATE 0
  #undef CYTHON_FAST_PYCALL
  #define CYTHON_FAST_PYCALL 0
  #undef CYTHON_PEP489_MULTI_PHASE_INIT
  #define CYTHON_PEP489_MULTI_PHASE_INIT 0
  #undef CYTHON_USE_TP_FINALIZE
  #define CYTHON_USE_TP_FINALIZE 0
  #undef CYTHON_USE_DICT_VERSIONS
  #define CYTHON_USE_DICT_VERSIONS 0
  #undef CYTHON_USE_EXC_INFO_STACK
  #define CYTHON_USE_EXC_INFO_STACK 0
  #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
    #define CYTHON_UPDATE_DESCRIPTOR_DOC 0
  #endif
#else
  #define CYTHON_COMPILING_IN_PYPY 0
  #define CYTHON_COMPILING_IN_PYSTON 0
  #define CYTHON_COMPILING_IN_CPYTHON 1
  #ifndef CYTHON_USE_TYPE_SLOTS
    #define CYTHON_USE_TYPE_SLOTS 1
  #endif
  #if PY_VERSION_HEX < 0x02070000
    #undef CYTHON_USE_PYTYPE_LOOKUP
    #define CYTHON_USE_PYTYPE_LOOKUP 0
  #elif !defined(CYTHON_USE_PYTYPE_LOOKUP)
    #define CYTHON_USE_PYTYPE_LOOKUP 1
  #endif
  #if PY_MAJOR_VERSION < 3
    #undef CYTHON_USE_ASYNC_SLOTS
    #define CYTHON_USE_ASYNC_SLOTS 0
  #elif !defined(CYTHON_USE_ASYNC_SLOTS)
    #define CYTHON_USE_ASYNC_SLOTS 1
  #endif
  #if PY_VERSION_HEX < 0x02070000
    #undef CYTHON_USE_PYLONG_INTERNALS
    #define CYTHON_USE_PYLONG_INTERNALS 0
  #elif !defined(CYTHON_USE_PYLONG_INTERNALS)
    #define CYTHON_USE_PYLONG_INTERNALS 1
  #endif
  #ifndef CYTHON_USE_PYLIST_INTERNALS
    #define CYTHON_USE_PYLIST_INTERNALS 1
  #endif
  #ifndef CYTHON_USE_UNICODE_INTERNALS
    #define CYTHON_USE_UNICODE_INTERNALS 1
  #endif
  #if PY_VERSION_HEX < 0x030300F0 || PY_VERSION_HEX >= 0x030B00A2
    #undef CYTHON_USE_UNICODE_WRITER
    #define CYTHON_USE_UNICODE_WRITER 0
  #elif !defined(CYTHON_USE_UNICODE_WRITER)
    #define CYTHON_USE_UNICODE_WRITER 1
  #endif
  #ifndef CYTHON_AVOID_BORROWED_REFS
    #define CYTHON_AVOID_BORROWED_REFS 0
  #endif
  #ifndef CYTHON_ASSUME_SAFE_MACROS
    #define CYTHON_ASSUME_SAFE_MACROS 1
  #endif
  #ifndef CYTHON_UNPACK_METHODS
    #define CYTHON_UNPACK_METHODS 1
  #endif
  #if PY_VERSION_HEX >= 0x030B00A4
    #undef CYTHON_FAST_THREAD_STATE
    #define CYTHON_FAST_THREAD_STATE 0
  #elif !defined(CYTHON_FAST_THREAD_STATE)
    #define CYTHON_FAST_THREAD_STATE 1
  #endif
  #ifndef CYTHON_FAST_PYCALL
    #define CYTHON_FAST_PYCALL (PY_VERSION_HEX < 0x030A0000)
  #endif
  #ifndef CYTHON_PEP489_MULTI_PHASE_INIT
    #define CYTHON_PEP489_MULTI_PHASE_INIT (PY_VERSION_HEX >= 0x03050000)
  #endif
  #ifndef CYTHON_USE_TP_FINALIZE
    #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1)
  #endif
  #ifndef CYTHON_USE_DICT_VERSIONS
    #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX >= 0x030600B1)
  #endif
  #if PY_VERSION_HEX >= 0x030B00A4
    #undef CYTHON_USE_EXC_INFO_STACK
    #define CYTHON_USE_EXC_INFO_STACK 0
  #elif !defined(CYTHON_USE_EXC_INFO_STACK)
    #define CYTHON_USE_EXC_INFO_STACK (PY_VERSION_HEX >= 0x030700A3)
  #endif
  #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
    #define CYTHON_UPDATE_DESCRIPTOR_DOC 1
  #endif
#endif
#if !defined(CYTHON_FAST_PYCCALL)
#define CYTHON_FAST_PYCCALL  (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1)
#endif
#if CYTHON_USE_PYLONG_INTERNALS
  #if PY_MAJOR_VERSION < 3
    #include "longintrepr.h"
  #endif
  #undef SHIFT
  #undef BASE
  #undef MASK
  #ifdef SIZEOF_VOID_P
    enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) };
  #endif
#endif
#ifndef __has_attribute
  #define __has_attribute(x) 0
#endif
#ifndef __has_cpp_attribute
  #define __has_cpp_attribute(x) 0
#endif
#ifndef CYTHON_RESTRICT
  #if defined(__GNUC__)
    #define CYTHON_RESTRICT __restrict__
  #elif defined(_MSC_VER) && _MSC_VER >= 1400
    #define CYTHON_RESTRICT __restrict
  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define CYTHON_RESTRICT restrict
  #else
    #define CYTHON_RESTRICT
  #endif
#endif
#ifndef CYTHON_UNUSED
# if defined(__GNUC__)
#   if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
#     define CYTHON_UNUSED __attribute__ ((__unused__))
#   else
#     define CYTHON_UNUSED
#   endif
# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
#   define CYTHON_UNUSED __attribute__ ((__unused__))
# else
#   define CYTHON_UNUSED
# endif
#endif
#ifndef CYTHON_MAYBE_UNUSED_VAR
#  if defined(__cplusplus)
     template<class T> void CYTHON_MAYBE_UNUSED_VAR( const T& ) { }
#  else
#    define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x)
#  endif
#endif
#ifndef CYTHON_NCP_UNUSED
# if CYTHON_COMPILING_IN_CPYTHON
#  define CYTHON_NCP_UNUSED
# else
#  define CYTHON_NCP_UNUSED CYTHON_UNUSED
# endif
#endif
#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None)
#ifdef _MSC_VER
    #ifndef _MSC_STDINT_H_
        #if _MSC_VER < 1300
           typedef unsigned char     uint8_t;
           typedef unsigned int      uint32_t;
        #else
           typedef unsigned __int8   uint8_t;
           typedef unsigned __int32  uint32_t;
        #endif
    #endif
#else
   #include <stdint.h>
#endif
#ifndef CYTHON_FALLTHROUGH
  #if defined(__cplusplus) && __cplusplus >= 201103L
    #if __has_cpp_attribute(fallthrough)
      #define CYTHON_FALLTHROUGH [[fallthrough]]
    #elif __has_cpp_attribute(clang::fallthrough)
      #define CYTHON_FALLTHROUGH [[clang::fallthrough]]
    #elif __has_cpp_attribute(gnu::fallthrough)
      #define CYTHON_FALLTHROUGH [[gnu::fallthrough]]
    #endif
  #endif
  #ifndef CYTHON_FALLTHROUGH
    #if __has_attribute(fallthrough)
      #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
    #else
      #define CYTHON_FALLTHROUGH
    #endif
  #endif
  #if defined(__clang__ ) && defined(__apple_build_version__)
    #if __apple_build_version__ < 7000000
      #undef  CYTHON_FALLTHROUGH
      #define CYTHON_FALLTHROUGH
    #endif
  #endif
#endif

#ifndef CYTHON_INLINE
  #if defined(__clang__)
    #define CYTHON_INLINE __inline__ __attribute__ ((__unused__))
  #elif defined(__GNUC__)
    #define CYTHON_INLINE __inline__
  #elif defined(_MSC_VER)
    #define CYTHON_INLINE __inline
  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define CYTHON_INLINE inline
  #else
    #define CYTHON_INLINE
  #endif
#endif

#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag)
  #define Py_OptimizeFlag 0
#endif
#define __PYX_BUILD_PY_SSIZE_T "n"
#define CYTHON_FORMAT_SSIZE_T "z"
#if PY_MAJOR_VERSION < 3
  #define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
          PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
  #define __Pyx_DefaultClassType PyClass_Type
#else
  #define __Pyx_BUILTIN_MODULE_NAME "builtins"
  #define __Pyx_DefaultClassType PyType_Type
#if PY_VERSION_HEX >= 0x030B00A1
    static CYTHON_INLINE PyCodeObject* __Pyx_PyCode_New(int a, int k, int l, int s, int f,
                                                    PyObject *code, PyObject *c, PyObject* n, PyObject *v,
                                                    PyObject *fv, PyObject *cell, PyObject* fn,
                                                    PyObject *name, int fline, PyObject *lnos) {
        PyObject *kwds=NULL, *argcount=NULL, *posonlyargcount=NULL, *kwonlyargcount=NULL;
        PyObject *nlocals=NULL, *stacksize=NULL, *flags=NULL, *replace=NULL, *call_result=NULL, *empty=NULL;
        const char *fn_cstr=NULL;
        const char *name_cstr=NULL;
        PyCodeObject* co=NULL;
        PyObject *type, *value, *traceback;
        PyErr_Fetch(&type, &value, &traceback);
        if (!(kwds=PyDict_New())) goto end;
        if (!(argcount=PyLong_FromLong(a))) goto end;
        if (PyDict_SetItemString(kwds, "co_argcount", argcount) != 0) goto end;
        if (!(posonlyargcount=PyLong_FromLong(0))) goto end;
        if (PyDict_SetItemString(kwds, "co_posonlyargcount", posonlyargcount) != 0) goto end;
        if (!(kwonlyargcount=PyLong_FromLong(k))) goto end;
        if (PyDict_SetItemString(kwds, "co_kwonlyargcount", kwonlyargcount) != 0) goto end;
        if (!(nlocals=PyLong_FromLong(l))) goto end;
        if (PyDict_SetItemString(kwds, "co_nlocals", nlocals) != 0) goto end;
        if (!(stacksize=PyLong_FromLong(s))) goto end;
        if (PyDict_SetItemString(kwds, "co_stacksize", stacksize) != 0) goto end;
        if (!(flags=PyLong_FromLong(f))) goto end;
        if (PyDict_SetItemString(kwds, "co_flags", flags) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_code", code) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_consts", c) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_names", n) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_varnames", v) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_freevars", fv) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_cellvars", cell) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_linetable", lnos) != 0) goto end;
        if (!(fn_cstr=PyUnicode_AsUTF8AndSize(fn, NULL))) goto end;
        if (!(name_cstr=PyUnicode_AsUTF8AndSize(name, NULL))) goto end;
        if (!(co = PyCode_NewEmpty(fn_cstr, name_cstr, fline))) goto end;
        if (!(replace = PyObject_GetAttrString((PyObject*)co, "replace"))) goto cleanup_code_too;
        if (!(empty = PyTuple_New(0))) goto cleanup_code_too; // unfortunately __pyx_empty_tuple isn't available here
        if (!(call_result = PyObject_Call(replace, empty, kwds))) goto cleanup_code_too;
        Py_XDECREF((PyObject*)co);
        co = (PyCodeObject*)call_result;
        call_result = NULL;
        if (0) {
            cleanup_code_too:
            Py_XDECREF((PyObject*)co);
            co = NULL;
        }
        end:
        Py_XDECREF(kwds);
        Py_XDECREF(argcount);
        Py_XDECREF(posonlyargcount);
        Py_XDECREF(kwonlyargcount);
        Py_XDECREF(nlocals);
        Py_XDECREF(stacksize);
        Py_XDECREF(replace);
        Py_XDECREF(call_result);
        Py_XDECREF(empty);
        if (type) {
            PyErr_Restore(type, value, traceback);
        }
        return co;
    }
#else
  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
          PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
#endif
  #define __Pyx_DefaultClassType PyType_Type
#endif
#ifndef Py_TPFLAGS_CHECKTYPES
  #define Py_TPFLAGS_CHECKTYPES 0
#endif
#ifndef Py_TPFLAGS_HAVE_INDEX
  #define Py_TPFLAGS_HAVE_INDEX 0
#endif
#ifndef Py_TPFLAGS_HAVE_NEWBUFFER
  #define Py_TPFLAGS_HAVE_NEWBUFFER 0
#endif
#ifndef Py_TPFLAGS_HAVE_FINALIZE
  #define Py_TPFLAGS_HAVE_FINALIZE 0
#endif
#ifndef METH_STACKLESS
  #define METH_STACKLESS 0
#endif
#if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL)
  #ifndef METH_FASTCALL
     #define METH_FASTCALL 0x80
  #endif
  typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs);
  typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args,
                                                          Py_ssize_t nargs, PyObject *kwnames);
#else
  #define __Pyx_PyCFunctionFast _PyCFunctionFast
  #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords
#endif
#if CYTHON_FAST_PYCCALL
#define __Pyx_PyFastCFunction_Check(func)\
    ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)))))
#else
#define __Pyx_PyFastCFunction_Check(func) 0
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc)
  #define PyObject_Malloc(s)   PyMem_Malloc(s)
  #define PyObject_Free(p)     PyMem_Free(p)
  #define PyObject_Realloc(p)  PyMem_Realloc(p)
#endif
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030400A1
  #define PyMem_RawMalloc(n)           PyMem_Malloc(n)
  #define PyMem_RawRealloc(p, n)       PyMem_Realloc(p, n)
  #define PyMem_RawFree(p)             PyMem_Free(p)
#endif
#if CYTHON_COMPILING_IN_PYSTON
  #define __Pyx_PyCode_HasFreeVars(co)  PyCode_HasFreeVars(co)
  #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno)
#else
  #define __Pyx_PyCode_HasFreeVars(co)  (PyCode_GetNumFree(co) > 0)
  #define __Pyx_PyFrame_SetLineNumber(frame, lineno)  (frame)->f_lineno = (lineno)
#endif
#if !CYTHON_FAST_THREAD_STATE || PY_VERSION_HEX < 0x02070000
  #define __Pyx_PyThreadState_Current PyThreadState_GET()
#elif PY_VERSION_HEX >= 0x03060000
  #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet()
#elif PY_VERSION_HEX >= 0x03000000
  #define __Pyx_PyThreadState_Current PyThreadState_GET()
#else
  #define __Pyx_PyThreadState_Current _PyThreadState_Current
#endif
#if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT)
#include "pythread.h"
#define Py_tss_NEEDS_INIT 0
typedef int Py_tss_t;
static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) {
  *key = PyThread_create_key();
  return 0;
}
static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) {
  Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t));
  *key = Py_tss_NEEDS_INIT;
  return key;
}
static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) {
  PyObject_Free(key);
}
static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) {
  return *key != Py_tss_NEEDS_INIT;
}
static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) {
  PyThread_delete_key(*key);
  *key = Py_tss_NEEDS_INIT;
}
static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) {
  return PyThread_set_key_value(*key, value);
}
static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
  return PyThread_get_key_value(*key);
}
#endif
#if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized)
#define __Pyx_PyDict_NewPresized(n)  ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n))
#else
#define __Pyx_PyDict_NewPresized(n)  PyDict_New()
#endif
#if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION
  #define __Pyx_PyNumber_Divide(x,y)         PyNumber_TrueDivide(x,y)
  #define __Pyx_PyNumber_InPlaceDivide(x,y)  PyNumber_InPlaceTrueDivide(x,y)
#else
  #define __Pyx_PyNumber_Divide(x,y)         PyNumber_Divide(x,y)
  #define __Pyx_PyNumber_InPlaceDivide(x,y)  PyNumber_InPlaceDivide(x,y)
#endif
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && CYTHON_USE_UNICODE_INTERNALS
#define __Pyx_PyDict_GetItemStr(dict, name)  _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash)
#else
#define __Pyx_PyDict_GetItemStr(dict, name)  PyDict_GetItem(dict, name)
#endif
#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
  #define CYTHON_PEP393_ENABLED 1
  #if defined(PyUnicode_IS_READY)
  #define __Pyx_PyUnicode_READY(op)       (likely(PyUnicode_IS_READY(op)) ?\
                                              0 : _PyUnicode_Ready((PyObject *)(op)))
  #else
  #define __Pyx_PyUnicode_READY(op)       (0)
  #endif
  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_LENGTH(u)
  #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u)   PyUnicode_MAX_CHAR_VALUE(u)
  #define __Pyx_PyUnicode_KIND(u)         PyUnicode_KIND(u)
  #define __Pyx_PyUnicode_DATA(u)         PyUnicode_DATA(u)
  #define __Pyx_PyUnicode_READ(k, d, i)   PyUnicode_READ(k, d, i)
  #define __Pyx_PyUnicode_WRITE(k, d, i, ch)  PyUnicode_WRITE(k, d, i, ch)
  #if defined(PyUnicode_IS_READY) && defined(PyUnicode_GET_SIZE)
  #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03090000
  #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : ((PyCompactUnicodeObject *)(u))->wstr_length))
  #else
  #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
  #endif
  #else
  #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != PyUnicode_GET_LENGTH(u))
  #endif
#else
  #define CYTHON_PEP393_ENABLED 0
  #define PyUnicode_1BYTE_KIND  1
  #define PyUnicode_2BYTE_KIND  2
  #define PyUnicode_4BYTE_KIND  4
  #define __Pyx_PyUnicode_READY(op)       (0)
  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_SIZE(u)
  #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u)   ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111)
  #define __Pyx_PyUnicode_KIND(u)         (sizeof(Py_UNICODE))
  #define __Pyx_PyUnicode_DATA(u)         ((void*)PyUnicode_AS_UNICODE(u))
  #define __Pyx_PyUnicode_READ(k, d, i)   ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
  #define __Pyx_PyUnicode_WRITE(k, d, i, ch)  (((void)(k)), ((Py_UNICODE*)d)[i] = ch)
  #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != PyUnicode_GET_SIZE(u))
#endif
#if CYTHON_COMPILING_IN_PYPY
  #define __Pyx_PyUnicode_Concat(a, b)      PyNumber_Add(a, b)
  #define __Pyx_PyUnicode_ConcatSafe(a, b)  PyNumber_Add(a, b)
#else
  #define __Pyx_PyUnicode_Concat(a, b)      PyUnicode_Concat(a, b)
  #define __Pyx_PyUnicode_ConcatSafe(a, b)  ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
      PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains)
  #define PyUnicode_Contains(u, s)  PySequence_Contains(u, s)
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check)
  #define PyByteArray_Check(obj)  PyObject_TypeCheck(obj, &PyByteArray_Type)
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format)
  #define PyObject_Format(obj, fmt)  PyObject_CallMethod(obj, "__format__", "O", fmt)
#endif
#define __Pyx_PyString_FormatSafe(a, b)   ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
#define __Pyx_PyUnicode_FormatSafe(a, b)  ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyString_Format(a, b)  PyUnicode_Format(a, b)
#else
  #define __Pyx_PyString_Format(a, b)  PyString_Format(a, b)
#endif
#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII)
  #define PyObject_ASCII(o)            PyObject_Repr(o)
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyBaseString_Type            PyUnicode_Type
  #define PyStringObject               PyUnicodeObject
  #define PyString_Type                PyUnicode_Type
  #define PyString_Check               PyUnicode_Check
  #define PyString_CheckExact          PyUnicode_CheckExact
#ifndef PyObject_Unicode
  #define PyObject_Unicode             PyObject_Str
#endif
#endif
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
  #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
#else
  #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj))
  #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj))
#endif
#ifndef PySet_CheckExact
  #define PySet_CheckExact(obj)        (Py_TYPE(obj) == &PySet_Type)
#endif
#if PY_VERSION_HEX >= 0x030900A4
  #define __Pyx_SET_REFCNT(obj, refcnt) Py_SET_REFCNT(obj, refcnt)
  #define __Pyx_SET_SIZE(obj, size) Py_SET_SIZE(obj, size)
#else
  #define __Pyx_SET_REFCNT(obj, refcnt) Py_REFCNT(obj) = (refcnt)
  #define __Pyx_SET_SIZE(obj, size) Py_SIZE(obj) = (size)
#endif
#if CYTHON_ASSUME_SAFE_MACROS
  #define __Pyx_PySequence_SIZE(seq)  Py_SIZE(seq)
#else
  #define __Pyx_PySequence_SIZE(seq)  PySequence_Size(seq)
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyIntObject                  PyLongObject
  #define PyInt_Type                   PyLong_Type
  #define PyInt_Check(op)              PyLong_Check(op)
  #define PyInt_CheckExact(op)         PyLong_CheckExact(op)
  #define PyInt_FromString             PyLong_FromString
  #define PyInt_FromUnicode            PyLong_FromUnicode
  #define PyInt_FromLong               PyLong_FromLong
  #define PyInt_FromSize_t             PyLong_FromSize_t
  #define PyInt_FromSsize_t            PyLong_FromSsize_t
  #define PyInt_AsLong                 PyLong_AsLong
  #define PyInt_AS_LONG                PyLong_AS_LONG
  #define PyInt_AsSsize_t              PyLong_AsSsize_t
  #define PyInt_AsUnsignedLongMask     PyLong_AsUnsignedLongMask
  #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
  #define PyNumber_Int                 PyNumber_Long
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyBoolObject                 PyLongObject
#endif
#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY
  #ifndef PyUnicode_InternFromString
    #define PyUnicode_InternFromString(s) PyUnicode_FromString(s)
  #endif
#endif
#if PY_VERSION_HEX < 0x030200A4
  typedef long Py_hash_t;
  #define __Pyx_PyInt_FromHash_t PyInt_FromLong
  #define __Pyx_PyInt_AsHash_t   __Pyx_PyIndex_AsHash_t
#else
  #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
  #define __Pyx_PyInt_AsHash_t   __Pyx_PyIndex_AsSsize_t
#endif
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyMethod_New(func, self, klass) ((self) ? ((void)(klass), PyMethod_New(func, self)) : __Pyx_NewRef(func))
#else
  #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
#endif
#if CYTHON_USE_ASYNC_SLOTS
  #if PY_VERSION_HEX >= 0x030500B1
    #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
    #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
  #else
    #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
  #endif
#else
  #define __Pyx_PyType_AsAsync(obj) NULL
#endif
#ifndef __Pyx_PyAsyncMethodsStruct
    typedef struct {
        unaryfunc am_await;
        unaryfunc am_aiter;
        unaryfunc am_anext;
    } __Pyx_PyAsyncMethodsStruct;
#endif

#if defined(_WIN32) || defined(WIN32) || defined(MS_WINDOWS)
  #if !defined(_USE_MATH_DEFINES)
    #define _USE_MATH_DEFINES
  #endif
#endif
#include <math.h>
#ifdef NAN
#define __PYX_NAN() ((float) NAN)
#else
static CYTHON_INLINE float __PYX_NAN() {
  float value;
  memset(&value, 0xFF, sizeof(value));
  return value;
}
#endif
#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL)
#define __Pyx_truncl trunc
#else
#define __Pyx_truncl truncl
#endif

#define __PYX_MARK_ERR_POS(f_index, lineno) \
    { __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; }
#define __PYX_ERR(f_index, lineno, Ln_error) \
    { __PYX_MARK_ERR_POS(f_index, lineno) goto Ln_error; }

#ifndef __PYX_EXTERN_C
  #ifdef __cplusplus
    #define __PYX_EXTERN_C extern "C"
  #else
    #define __PYX_EXTERN_C extern
  #endif
#endif

#define __PYX_HAVE___rnaseq_utils
#define __PYX_HAVE_API___rnaseq_utils
/* Early includes */
#include <string.h>
#include <stdio.h>
#include "pythread.h"
#include "numpy/arrayobject.h"
#include "numpy/ndarrayobject.h"
#include "numpy/ndarraytypes.h"
#include "numpy/arrayscalars.h"
#include "numpy/ufuncobject.h"

    /* NumPy API declarations from "numpy/__init__.pxd" */
    
#include <stdlib.h>
#include "pystate.h"
#ifdef _OPENMP
#include <omp.h>
#endif /* _OPENMP */

#if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS)
#define CYTHON_WITHOUT_ASSERTIONS
#endif

typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding;
                const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;

#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
#define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 0
#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8)
#define __PYX_DEFAULT_STRING_ENCODING ""
#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
#define __Pyx_uchar_cast(c) ((unsigned char)c)
#define __Pyx_long_cast(x) ((long)x)
#define __Pyx_fits_Py_ssize_t(v, type, is_signed)  (\
    (sizeof(type) < sizeof(Py_ssize_t))  ||\
    (sizeof(type) > sizeof(Py_ssize_t) &&\
          likely(v < (type)PY_SSIZE_T_MAX ||\
                 v == (type)PY_SSIZE_T_MAX)  &&\
          (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
                                v == (type)PY_SSIZE_T_MIN)))  ||\
    (sizeof(type) == sizeof(Py_ssize_t) &&\
          (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
                               v == (type)PY_SSIZE_T_MAX)))  )
static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) {
    return (size_t) i < (size_t) limit;
}
#if defined (__cplusplus) && __cplusplus >= 201103L
    #include <cstdlib>
    #define __Pyx_sst_abs(value) std::abs(value)
#elif SIZEOF_INT >= SIZEOF_SIZE_T
    #define __Pyx_sst_abs(value) abs(value)
#elif SIZEOF_LONG >= SIZEOF_SIZE_T
    #define __Pyx_sst_abs(value) labs(value)
#elif defined (_MSC_VER)
    #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value))
#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define __Pyx_sst_abs(value) llabs(value)
#elif defined (__GNUC__)
    #define __Pyx_sst_abs(value) __builtin_llabs(value)
#else
    #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
#endif
static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*);
static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
#define __Pyx_PyBytes_FromString        PyBytes_FromString
#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
#if PY_MAJOR_VERSION < 3
    #define __Pyx_PyStr_FromString        __Pyx_PyBytes_FromString
    #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
#else
    #define __Pyx_PyStr_FromString        __Pyx_PyUnicode_FromString
    #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
#endif
#define __Pyx_PyBytes_AsWritableString(s)     ((char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsWritableSString(s)    ((signed char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsWritableUString(s)    ((unsigned char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsString(s)     ((const char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsSString(s)    ((const signed char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsUString(s)    ((const unsigned char*) PyBytes_AS_STRING(s))
#define __Pyx_PyObject_AsWritableString(s)    ((char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsWritableSString(s)    ((signed char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsWritableUString(s)    ((unsigned char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsSString(s)    ((const signed char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsUString(s)    ((const unsigned char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_FromCString(s)  __Pyx_PyObject_FromString((const char*)s)
#define __Pyx_PyBytes_FromCString(s)   __Pyx_PyBytes_FromString((const char*)s)
#define __Pyx_PyByteArray_FromCString(s)   __Pyx_PyByteArray_FromString((const char*)s)
#define __Pyx_PyStr_FromCString(s)     __Pyx_PyStr_FromString((const char*)s)
#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) {
    const Py_UNICODE *u_end = u;
    while (*u_end++) ;
    return (size_t)(u_end - u - 1);
}
#define __Pyx_PyUnicode_FromUnicode(u)       PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
#define __Pyx_PyUnicode_AsUnicode            PyUnicode_AsUnicode
#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b);
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*);
static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
#define __Pyx_PySequence_Tuple(obj)\
    (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj))
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*);
#if CYTHON_ASSUME_SAFE_MACROS
#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
#else
#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
#endif
#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
#else
#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
#endif
#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x))
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
static int __Pyx_sys_getdefaultencoding_not_ascii;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
    PyObject* sys;
    PyObject* default_encoding = NULL;
    PyObject* ascii_chars_u = NULL;
    PyObject* ascii_chars_b = NULL;
    const char* default_encoding_c;
    sys = PyImport_ImportModule("sys");
    if (!sys) goto bad;
    default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
    Py_DECREF(sys);
    if (!default_encoding) goto bad;
    default_encoding_c = PyBytes_AsString(default_encoding);
    if (!default_encoding_c) goto bad;
    if (strcmp(default_encoding_c, "ascii") == 0) {
        __Pyx_sys_getdefaultencoding_not_ascii = 0;
    } else {
        char ascii_chars[128];
        int c;
        for (c = 0; c < 128; c++) {
            ascii_chars[c] = c;
        }
        __Pyx_sys_getdefaultencoding_not_ascii = 1;
        ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
        if (!ascii_chars_u) goto bad;
        ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
        if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
            PyErr_Format(
                PyExc_ValueError,
                "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
                default_encoding_c);
            goto bad;
        }
        Py_DECREF(ascii_chars_u);
        Py_DECREF(ascii_chars_b);
    }
    Py_DECREF(default_encoding);
    return 0;
bad:
    Py_XDECREF(default_encoding);
    Py_XDECREF(ascii_chars_u);
    Py_XDECREF(ascii_chars_b);
    return -1;
}
#endif
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
#else
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
static char* __PYX_DEFAULT_STRING_ENCODING;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
    PyObject* sys;
    PyObject* default_encoding = NULL;
    char* default_encoding_c;
    sys = PyImport_ImportModule("sys");
    if (!sys) goto bad;
    default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
    Py_DECREF(sys);
    if (!default_encoding) goto bad;
    default_encoding_c = PyBytes_AsString(default_encoding);
    if (!default_encoding_c) goto bad;
    __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1);
    if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
    strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
    Py_DECREF(default_encoding);
    return 0;
bad:
    Py_XDECREF(default_encoding);
    return -1;
}
#endif
#endif


/* Test for GCC > 2.95 */
#if defined(__GNUC__)     && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
  #define likely(x)   __builtin_expect(!!(x), 1)
  #define unlikely(x) __builtin_expect(!!(x), 0)
#else /* !__GNUC__ or GCC < 2.95 */
  #define likely(x)   (x)
  #define unlikely(x) (x)
#endif /* __GNUC__ */
static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; }

static PyObject *__pyx_m = NULL;
static PyObject *__pyx_d;
static PyObject *__pyx_b;
static PyObject *__pyx_cython_runtime = NULL;
static PyObject *__pyx_empty_tuple;
static PyObject *__pyx_empty_bytes;
static PyObject *__pyx_empty_unicode;
static int __pyx_lineno;
static int __pyx_clineno = 0;
static const char * __pyx_cfilenm= __FILE__;
static const char *__pyx_filename;

/* Header.proto */
#if !defined(CYTHON_CCOMPLEX)
  #if defined(__cplusplus)
    #define CYTHON_CCOMPLEX 1
  #elif defined(_Complex_I)
    #define CYTHON_CCOMPLEX 1
  #else
    #define CYTHON_CCOMPLEX 0
  #endif
#endif
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    #include <complex>
  #else
    #include <complex.h>
  #endif
#endif
#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__)
  #undef _Complex_I
  #define _Complex_I 1.0fj
#endif


static const char *__pyx_f[] = {
  "_rnaseq_utils.pyx",
  "stringsource",
  "array.pxd",
  "__init__.pxd",
  "type.pxd",
  "bool.pxd",
  "complex.pxd",
};
/* BufferFormatStructs.proto */
#define IS_UNSIGNED(type) (((type) -1) > 0)
struct __Pyx_StructField_;
#define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0)
typedef struct {
  const char* name;
  struct __Pyx_StructField_* fields;
  size_t size;
  size_t arraysize[8];
  int ndim;
  char typegroup;
  char is_unsigned;
  int flags;
} __Pyx_TypeInfo;
typedef struct __Pyx_StructField_ {
  __Pyx_TypeInfo* type;
  const char* name;
  size_t offset;
} __Pyx_StructField;
typedef struct {
  __Pyx_StructField* field;
  size_t parent_offset;
} __Pyx_BufFmt_StackElem;
typedef struct {
  __Pyx_StructField root;
  __Pyx_BufFmt_StackElem* head;
  size_t fmt_offset;
  size_t new_count, enc_count;
  size_t struct_alignment;
  int is_complex;
  char enc_type;
  char new_packmode;
  char enc_packmode;
  char is_valid_array;
} __Pyx_BufFmt_Context;

/* MemviewSliceStruct.proto */
struct __pyx_memoryview_obj;
typedef struct {
  struct __pyx_memoryview_obj *memview;
  char *data;
  Py_ssize_t shape[8];
  Py_ssize_t strides[8];
  Py_ssize_t suboffsets[8];
} __Pyx_memviewslice;
#define __Pyx_MemoryView_Len(m)  (m.shape[0])

/* Atomics.proto */
#include <pythread.h>
#ifndef CYTHON_ATOMICS
    #define CYTHON_ATOMICS 1
#endif
#define __pyx_atomic_int_type int
#if CYTHON_ATOMICS && __GNUC__ >= 4 && (__GNUC_MINOR__ > 1 ||\
                    (__GNUC_MINOR__ == 1 && __GNUC_PATCHLEVEL >= 2)) &&\
                    !defined(__i386__)
    #define __pyx_atomic_incr_aligned(value, lock) __sync_fetch_and_add(value, 1)
    #define __pyx_atomic_decr_aligned(value, lock) __sync_fetch_and_sub(value, 1)
    #ifdef __PYX_DEBUG_ATOMICS
        #warning "Using GNU atomics"
    #endif
#elif CYTHON_ATOMICS && defined(_MSC_VER) && 0
    #include <Windows.h>
    #undef __pyx_atomic_int_type
    #define __pyx_atomic_int_type LONG
    #define __pyx_atomic_incr_aligned(value, lock) InterlockedIncrement(value)
    #define __pyx_atomic_decr_aligned(value, lock) InterlockedDecrement(value)
    #ifdef __PYX_DEBUG_ATOMICS
        #pragma message ("Using MSVC atomics")
    #endif
#elif CYTHON_ATOMICS && (defined(__ICC) || defined(__INTEL_COMPILER)) && 0
    #define __pyx_atomic_incr_aligned(value, lock) _InterlockedIncrement(value)
    #define __pyx_atomic_decr_aligned(value, lock) _InterlockedDecrement(value)
    #ifdef __PYX_DEBUG_ATOMICS
        #warning "Using Intel atomics"
    #endif
#else
    #undef CYTHON_ATOMICS
    #define CYTHON_ATOMICS 0
    #ifdef __PYX_DEBUG_ATOMICS
        #warning "Not using atomics"
    #endif
#endif
typedef volatile __pyx_atomic_int_type __pyx_atomic_int;
#if CYTHON_ATOMICS
    #define __pyx_add_acquisition_count(memview)\
             __pyx_atomic_incr_aligned(__pyx_get_slice_count_pointer(memview), memview->lock)
    #define __pyx_sub_acquisition_count(memview)\
            __pyx_atomic_decr_aligned(__pyx_get_slice_count_pointer(memview), memview->lock)
#else
    #define __pyx_add_acquisition_count(memview)\
            __pyx_add_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock)
    #define __pyx_sub_acquisition_count(memview)\
            __pyx_sub_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock)
#endif

/* ForceInitThreads.proto */
#ifndef __PYX_FORCE_INIT_THREADS
  #define __PYX_FORCE_INIT_THREADS 0
#endif

/* NoFastGil.proto */
#define __Pyx_PyGILState_Ensure PyGILState_Ensure
#define __Pyx_PyGILState_Release PyGILState_Release
#define __Pyx_FastGIL_Remember()
#define __Pyx_FastGIL_Forget()
#define __Pyx_FastGilFuncInit()


/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":690
 * # in Cython to enable them only on the right systems.
 * 
 * ctypedef npy_int8       int8_t             # <<<<<<<<<<<<<<
 * ctypedef npy_int16      int16_t
 * ctypedef npy_int32      int32_t
 */
typedef npy_int8 __pyx_t_5numpy_int8_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":691
 * 
 * ctypedef npy_int8       int8_t
 * ctypedef npy_int16      int16_t             # <<<<<<<<<<<<<<
 * ctypedef npy_int32      int32_t
 * ctypedef npy_int64      int64_t
 */
typedef npy_int16 __pyx_t_5numpy_int16_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":692
 * ctypedef npy_int8       int8_t
 * ctypedef npy_int16      int16_t
 * ctypedef npy_int32      int32_t             # <<<<<<<<<<<<<<
 * ctypedef npy_int64      int64_t
 * #ctypedef npy_int96      int96_t
 */
typedef npy_int32 __pyx_t_5numpy_int32_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":693
 * ctypedef npy_int16      int16_t
 * ctypedef npy_int32      int32_t
 * ctypedef npy_int64      int64_t             # <<<<<<<<<<<<<<
 * #ctypedef npy_int96      int96_t
 * #ctypedef npy_int128     int128_t
 */
typedef npy_int64 __pyx_t_5numpy_int64_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":697
 * #ctypedef npy_int128     int128_t
 * 
 * ctypedef npy_uint8      uint8_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uint16     uint16_t
 * ctypedef npy_uint32     uint32_t
 */
typedef npy_uint8 __pyx_t_5numpy_uint8_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":698
 * 
 * ctypedef npy_uint8      uint8_t
 * ctypedef npy_uint16     uint16_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uint32     uint32_t
 * ctypedef npy_uint64     uint64_t
 */
typedef npy_uint16 __pyx_t_5numpy_uint16_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":699
 * ctypedef npy_uint8      uint8_t
 * ctypedef npy_uint16     uint16_t
 * ctypedef npy_uint32     uint32_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uint64     uint64_t
 * #ctypedef npy_uint96     uint96_t
 */
typedef npy_uint32 __pyx_t_5numpy_uint32_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":700
 * ctypedef npy_uint16     uint16_t
 * ctypedef npy_uint32     uint32_t
 * ctypedef npy_uint64     uint64_t             # <<<<<<<<<<<<<<
 * #ctypedef npy_uint96     uint96_t
 * #ctypedef npy_uint128    uint128_t
 */
typedef npy_uint64 __pyx_t_5numpy_uint64_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":704
 * #ctypedef npy_uint128    uint128_t
 * 
 * ctypedef npy_float32    float32_t             # <<<<<<<<<<<<<<
 * ctypedef npy_float64    float64_t
 * #ctypedef npy_float80    float80_t
 */
typedef npy_float32 __pyx_t_5numpy_float32_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":705
 * 
 * ctypedef npy_float32    float32_t
 * ctypedef npy_float64    float64_t             # <<<<<<<<<<<<<<
 * #ctypedef npy_float80    float80_t
 * #ctypedef npy_float128   float128_t
 */
typedef npy_float64 __pyx_t_5numpy_float64_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":714
 * # The int types are mapped a bit surprising --
 * # numpy.int corresponds to 'l' and numpy.long to 'q'
 * ctypedef npy_long       int_t             # <<<<<<<<<<<<<<
 * ctypedef npy_longlong   long_t
 * ctypedef npy_longlong   longlong_t
 */
typedef npy_long __pyx_t_5numpy_int_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":715
 * # numpy.int corresponds to 'l' and numpy.long to 'q'
 * ctypedef npy_long       int_t
 * ctypedef npy_longlong   long_t             # <<<<<<<<<<<<<<
 * ctypedef npy_longlong   longlong_t
 * 
 */
typedef npy_longlong __pyx_t_5numpy_long_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":716
 * ctypedef npy_long       int_t
 * ctypedef npy_longlong   long_t
 * ctypedef npy_longlong   longlong_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_ulong      uint_t
 */
typedef npy_longlong __pyx_t_5numpy_longlong_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":718
 * ctypedef npy_longlong   longlong_t
 * 
 * ctypedef npy_ulong      uint_t             # <<<<<<<<<<<<<<
 * ctypedef npy_ulonglong  ulong_t
 * ctypedef npy_ulonglong  ulonglong_t
 */
typedef npy_ulong __pyx_t_5numpy_uint_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":719
 * 
 * ctypedef npy_ulong      uint_t
 * ctypedef npy_ulonglong  ulong_t             # <<<<<<<<<<<<<<
 * ctypedef npy_ulonglong  ulonglong_t
 * 
 */
typedef npy_ulonglong __pyx_t_5numpy_ulong_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":720
 * ctypedef npy_ulong      uint_t
 * ctypedef npy_ulonglong  ulong_t
 * ctypedef npy_ulonglong  ulonglong_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_intp       intp_t
 */
typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":722
 * ctypedef npy_ulonglong  ulonglong_t
 * 
 * ctypedef npy_intp       intp_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uintp      uintp_t
 * 
 */
typedef npy_intp __pyx_t_5numpy_intp_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":723
 * 
 * ctypedef npy_intp       intp_t
 * ctypedef npy_uintp      uintp_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_double     float_t
 */
typedef npy_uintp __pyx_t_5numpy_uintp_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":725
 * ctypedef npy_uintp      uintp_t
 * 
 * ctypedef npy_double     float_t             # <<<<<<<<<<<<<<
 * ctypedef npy_double     double_t
 * ctypedef npy_longdouble longdouble_t
 */
typedef npy_double __pyx_t_5numpy_float_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":726
 * 
 * ctypedef npy_double     float_t
 * ctypedef npy_double     double_t             # <<<<<<<<<<<<<<
 * ctypedef npy_longdouble longdouble_t
 * 
 */
typedef npy_double __pyx_t_5numpy_double_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":727
 * ctypedef npy_double     float_t
 * ctypedef npy_double     double_t
 * ctypedef npy_longdouble longdouble_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_cfloat      cfloat_t
 */
typedef npy_longdouble __pyx_t_5numpy_longdouble_t;

/* "_rnaseq_utils.pyx":12
 * from ast import literal_eval
 * import copy
 * ctypedef unsigned char uint8             # <<<<<<<<<<<<<<
 * ctypedef np.float32_t float32
 * 
 */
typedef unsigned char __pyx_t_13_rnaseq_utils_uint8;

/* "_rnaseq_utils.pyx":13
 * import copy
 * ctypedef unsigned char uint8
 * ctypedef np.float32_t float32             # <<<<<<<<<<<<<<
 * 
 * ##############################################
 */
typedef __pyx_t_5numpy_float32_t __pyx_t_13_rnaseq_utils_float32;
/* Declarations.proto */
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    typedef ::std::complex< float > __pyx_t_float_complex;
  #else
    typedef float _Complex __pyx_t_float_complex;
  #endif
#else
    typedef struct { float real, imag; } __pyx_t_float_complex;
#endif
static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float);

/* Declarations.proto */
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    typedef ::std::complex< double > __pyx_t_double_complex;
  #else
    typedef double _Complex __pyx_t_double_complex;
  #endif
#else
    typedef struct { double real, imag; } __pyx_t_double_complex;
#endif
static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double);


/*--- Type declarations ---*/
#ifndef _ARRAYARRAY_H
struct arrayobject;
typedef struct arrayobject arrayobject;
#endif
struct __pyx_obj_13_rnaseq_utils_RNAseqMapping;
struct __pyx_obj_13_rnaseq_utils_RNAseqDataset;
struct __pyx_obj_13_rnaseq_utils_AnnotationObject;
struct __pyx_obj_13_rnaseq_utils_AnnotationDataset;
struct __pyx_obj_13_rnaseq_utils_BAMobject;
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct____init__;
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_1_genexpr;
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_2_generate_loci;
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_3_array_to_blocks;
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string;
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_5_read_generator;
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks;
struct __pyx_array_obj;
struct __pyx_MemviewEnum_obj;
struct __pyx_memoryview_obj;
struct __pyx_memoryviewslice_obj;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":729
 * ctypedef npy_longdouble longdouble_t
 * 
 * ctypedef npy_cfloat      cfloat_t             # <<<<<<<<<<<<<<
 * ctypedef npy_cdouble     cdouble_t
 * ctypedef npy_clongdouble clongdouble_t
 */
typedef npy_cfloat __pyx_t_5numpy_cfloat_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":730
 * 
 * ctypedef npy_cfloat      cfloat_t
 * ctypedef npy_cdouble     cdouble_t             # <<<<<<<<<<<<<<
 * ctypedef npy_clongdouble clongdouble_t
 * 
 */
typedef npy_cdouble __pyx_t_5numpy_cdouble_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":731
 * ctypedef npy_cfloat      cfloat_t
 * ctypedef npy_cdouble     cdouble_t
 * ctypedef npy_clongdouble clongdouble_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_cdouble     complex_t
 */
typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;

/* "../../../../../../../../../../home/schon035/anaconda3/lib/python3.7/site-packages/numpy/__init__.pxd":733
 * ctypedef npy_clongdouble clongdouble_t
 * 
 * ctypedef npy_cdouble     complex_t             # <<<<<<<<<<<<<<
 * 
 * cdef inline object PyArray_MultiIterNew1(a):
 */
typedef npy_cdouble __pyx_t_5numpy_complex_t;
struct __pyx_ctuple_int__and_int;
typedef struct __pyx_ctuple_int__and_int __pyx_ctuple_int__and_int;
struct __pyx_ctuple_float__and_float__and_float;
typedef struct __pyx_ctuple_float__and_float__and_float __pyx_ctuple_float__and_float__and_float;
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_splice_match;
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_is_compatible;
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_get_node_labels;
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_write_as_elr;
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_write_as_bed;
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqDataset_add_read_from_BED;
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqDataset_pop_read;
struct __pyx_opt_args_13_rnaseq_utils_build_depth_matrix;
struct __pyx_opt_args_13_rnaseq_utils_bedgraph;
struct __pyx_opt_args_13_rnaseq_utils_parse_BED_line;
struct __pyx_opt_args_13_rnaseq_utils_parse_SAM_CIGAR;
struct __pyx_opt_args_13_rnaseq_utils_is_homopolymer;
struct __pyx_ctuple_int__and_int__and_int__and_int;
typedef struct __pyx_ctuple_int__and_int__and_int__and_int __pyx_ctuple_int__and_int__and_int__and_int;
struct __pyx_opt_args_13_rnaseq_utils_parse_tag;
struct __pyx_opt_args_13_rnaseq_utils_9BAMobject_filter_labels_by_softclip;
struct __pyx_ctuple_int__and_int__and_int;
typedef struct __pyx_ctuple_int__and_int__and_int __pyx_ctuple_int__and_int__and_int;
struct __pyx_opt_args_13_rnaseq_utils_9BAMobject_shift_junction;
struct __pyx_opt_args_13_rnaseq_utils_9BAMobject_determine_strand;
struct __pyx_opt_args_13_rnaseq_utils_get_gaps;

/* "_rnaseq_utils.pyx":24
 *     cdef public bint s_tag, e_tag, capped, complete, is_reference, condensed
 *     cdef public dict attributes
 *     cdef public (int, int) span             # <<<<<<<<<<<<<<
 *     cdef public float weight, coverage
 *     cdef public (float, float, float) tripleweight
 */
struct __pyx_ctuple_int__and_int {
  int f0;
  int f1;
};

/* "_rnaseq_utils.pyx":26
 *     cdef public (int, int) span
 *     cdef public float weight, coverage
 *     cdef public (float, float, float) tripleweight             # <<<<<<<<<<<<<<
 *     def __init__(self, input_data, attributes = None):
 *         """Initializes a Read Object given a tuple of input data.
 */
struct __pyx_ctuple_float__and_float__and_float {
  float f0;
  float f1;
  float f2;
};

/* "_rnaseq_utils.pyx":199
 *         return False
 * 
 *     cpdef bint splice_match(self, RNAseqMapping other, bint ignore_ends=True):             # <<<<<<<<<<<<<<
 *         """Returns bool of whether self and other ranges match perfectly.
 *         Discards 5' and 3' terminus if ignore_ends."""
 */
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_splice_match {
  int __pyx_n;
  int ignore_ends;
};

/* "_rnaseq_utils.pyx":236
 *         return False
 * 
 *     cpdef bint is_compatible(self, RNAseqMapping other, bint ignore_ends=False, bint ignore_source=False):             # <<<<<<<<<<<<<<
 *         """Self and other contain no attributes that demonstrate they could
 *         not be subsequences of a common longer molecule."""
 */
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_is_compatible {
  int __pyx_n;
  int ignore_ends;
  int ignore_source;
};

/* "_rnaseq_utils.pyx":308
 *         return True
 * 
 *     cpdef str get_node_labels(self, bint record_artifacts=False, bint condense=False):             # <<<<<<<<<<<<<<
 *         """Returns a string with one label for each edge of each range in self.ranges."""
 *         cdef str startchar, endchar, gapchar
 */
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_get_node_labels {
  int __pyx_n;
  int record_artifacts;
  int condense;
};

/* "_rnaseq_utils.pyx":330
 *         return ''.join([startchar]+[gapchar if i else '..' for i in self.splice]+[endchar])
 * 
 *     cpdef write_as_elr(self, bint as_string=True, bint record_artifacts=False, bint condense=False, bint endweights=False):             # <<<<<<<<<<<<<<
 *         """Returns a string that represents the ReadObject
 *         in the end-labeled read (ELR) format"""
 */
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_write_as_elr {
  int __pyx_n;
  int as_string;
  int record_artifacts;
  int condense;
  int endweights;
};

/* "_rnaseq_utils.pyx":361
 *             return elr_line
 * 
 *     cpdef write_as_bed(self, chrom_array, source_array, as_string=True, score_column='weight', record_artifacts=False, name_attr=None, color=None, condense=False, longStart=None, longEnd=None):             # <<<<<<<<<<<<<<
 *         """Returns a string that represents the ReadObject
 *         in a 15-column BED format"""
 */
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_write_as_bed {
  int __pyx_n;
  PyObject *as_string;
  PyObject *score_column;
  PyObject *record_artifacts;
  PyObject *name_attr;
  PyObject *color;
  PyObject *condense;
  PyObject *longStart;
  PyObject *longEnd;
};

/* "_rnaseq_utils.pyx":658
 *             self.chrom_index += 1
 * 
 *     cpdef add_read_from_BED(self, bed_line, source_string=None, s_tag=False, e_tag=False, capped=False, gaps_are_junctions=False):             # <<<<<<<<<<<<<<
 *         cdef RNAseqMapping new_read
 *         input_data = parse_BED_line(bed_line, self.chrom_dict, self.source_dict, source_string, s_tag, e_tag, capped, gaps_are_junctions)
 */
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqDataset_add_read_from_BED {
  int __pyx_n;
  PyObject *source_string;
  PyObject *s_tag;
  PyObject *e_tag;
  PyObject *capped;
  PyObject *gaps_are_junctions;
};

/* "_rnaseq_utils.pyx":717
 *         self.read_list += new_read_list
 * 
 *     cpdef pop_read(self, read_format='elr', as_string=True):             # <<<<<<<<<<<<<<
 *         """Remove the last read added to the stack and write it in 'format'.
 *         """
 */
struct __pyx_opt_args_13_rnaseq_utils_13RNAseqDataset_pop_read {
  int __pyx_n;
  PyObject *read_format;
  PyObject *as_string;
};

/* "_rnaseq_utils.pyx":1424
 *     return source_lookup
 * 
 * cpdef build_depth_matrix(int leftmost, int rightmost, tuple reads, bint use_attributes=True, bint splice=True):             # <<<<<<<<<<<<<<
 *     """Stores a numpy array of feature-specific coverage depth for the read list.
 *     Populates an 11-row matrix:
 */
struct __pyx_opt_args_13_rnaseq_utils_build_depth_matrix {
  int __pyx_n;
  int use_attributes;
  int splice;
};

/* "_rnaseq_utils.pyx":1525
 *     return depth_matrix, J_plus, J_minus
 * 
 * cpdef str bedgraph(str chrom, int leftmost, np.ndarray depth_matrix, str seqtype='', int strand=0):             # <<<<<<<<<<<<<<
 *     """Returns a list of bedgraph lines from an array of height values."""
 *     cdef:
 */
struct __pyx_opt_args_13_rnaseq_utils_bedgraph {
  int __pyx_n;
  PyObject *seqtype;
  int strand;
};

/* "_rnaseq_utils.pyx":1601
 * 
 * 
 * cdef parse_BED_line(bed_line, chrom_dict, source_dict, source_string=None, s_tag=False, e_tag=False, capped=False, gaps_are_junctions=False, keep_readname=False):             # <<<<<<<<<<<<<<
 *     """Parses one line of a 12- or 15-column BED file into an ELdata namedtuple.
 *     Examples:
 */
struct __pyx_opt_args_13_rnaseq_utils_parse_BED_line {
  int __pyx_n;
  PyObject *source_string;
  PyObject *s_tag;
  PyObject *e_tag;
  PyObject *capped;
  PyObject *gaps_are_junctions;
  PyObject *keep_readname;
};

/* "_rnaseq_utils.pyx":1794
 * 
 * 
 * cpdef parse_SAM_CIGAR(int pos, list cigartuples, str mdstring, float error_rate=0.1, bint quality_filter=False):             # <<<<<<<<<<<<<<
 *     """Converts the po and pysam-parsed CIGAR object of a SAM file to
 *     an array of 0-indexed open (left,right) blocks as ranges and gaps.
 */
struct __pyx_opt_args_13_rnaseq_utils_parse_SAM_CIGAR {
  int __pyx_n;
  float error_rate;
  int quality_filter;
};

/* "_rnaseq_utils.pyx":1894
 * 
 * 
 * cdef bint is_homopolymer(str string, float threshold=0.8):             # <<<<<<<<<<<<<<
 *     """Returns whether a single character composes > threshold
 *     of a string."""
 */
struct __pyx_opt_args_13_rnaseq_utils_is_homopolymer {
  int __pyx_n;
  float threshold;
};

/* "_rnaseq_utils.pyx":1920
 * 
 * 
 * cdef (bint, bint, int, int) parse_tag(str string, str tagsplit='_TAG='):             # <<<<<<<<<<<<<<
 *     """Updates readtype based on a tag present in the ID string"""
 *     cdef int e_len, s_len
 */
struct __pyx_ctuple_int__and_int__and_int__and_int {
  int f0;
  int f1;
  int f2;
  int f3;
};
struct __pyx_opt_args_13_rnaseq_utils_parse_tag {
  int __pyx_n;
  PyObject *tagsplit;
};

/* "_rnaseq_utils.pyx":2156
 *         return mapping_list
 * 
 *     cdef (bint, bint, bint, int) filter_labels_by_softclip(self, str chrom, list ranges, str seq, bint s_tag, bint e_tag, bint capped, bint fiveprime, bint threeprime, int strand, int head, int tail, int max_headclip, int eval_length=10):             # <<<<<<<<<<<<<<
 *         """Examines the left and right softclip of the read to determine
 *         if s_tag, capped, e_tag, or strand attributes should be modified."""
 */
struct __pyx_opt_args_13_rnaseq_utils_9BAMobject_filter_labels_by_softclip {
  int __pyx_n;
  int eval_length;
};

/* "_rnaseq_utils.pyx":2350
 *         return strand, ranges, canonical
 * 
 *     cdef (int, int, int) shift_junction(self, str chrom, int left, int right, int strand, bint indel=True):             # <<<<<<<<<<<<<<
 *         """Returns a new left/right border of an intron and its strand."""
 *         cdef int i, js
 */
struct __pyx_ctuple_int__and_int__and_int {
  int f0;
  int f1;
  int f2;
};
struct __pyx_opt_args_13_rnaseq_utils_9BAMobject_shift_junction {
  int __pyx_n;
  int indel;
};

/* "_rnaseq_utils.pyx":2419
 *         return Nmap
 * 
 *     cdef (int, int) determine_strand(self, line, bint stranded, bint reverse=False):             # <<<<<<<<<<<<<<
 *         """Determine the RNA strand of a pysam object"""
 *         cdef int mate, strand
 */
struct __pyx_opt_args_13_rnaseq_utils_9BAMobject_determine_strand {
  int __pyx_n;
  int reverse;
};

/* "_rnaseq_utils.pyx":2629
 *     return False
 * 
 * cpdef list get_gaps(np.ndarray[float, ndim=1] array, int maxgap, threshold = float(1)):             # <<<<<<<<<<<<<<
 *     """Returns True if no gap longer than maxgap in the array falls below the threshold"""
 *     cdef Py_ssize_t i, l
 */
struct __pyx_opt_args_13_rnaseq_utils_get_gaps {
  int __pyx_n;
  PyObject *threshold;
};

/* "_rnaseq_utils.pyx":19
 * ##############################################
 * ELdata = namedtuple('ELdata', 'chrom source strand ranges splice s_tag e_tag capped weight condensed')
 * cdef class RNAseqMapping():             # <<<<<<<<<<<<<<
 *     cdef public int chrom, source, strand, s_len, e_len
 *     cdef public list ranges, splice
 */
struct __pyx_obj_13_rnaseq_utils_RNAseqMapping {
  PyObject_HEAD
  struct __pyx_vtabstruct_13_rnaseq_utils_RNAseqMapping *__pyx_vtab;
  int chrom;
  int source;
  int strand;
  int s_len;
  int e_len;
  PyObject *ranges;
  PyObject *splice;
  int s_tag;
  int e_tag;
  int capped;
  int complete;
  int is_reference;
  int condensed;
  PyObject *attributes;
  __pyx_ctuple_int__and_int span;
  float weight;
  float coverage;
  __pyx_ctuple_float__and_float__and_float tripleweight;
};


/* "_rnaseq_utils.pyx":512
 *     'child_key_gene':'gene'
 * }
 * cdef class RNAseqDataset():             # <<<<<<<<<<<<<<
 *     cdef public list read_list, chrom_array, source_array, chrom_lengths
 *     cdef public int chrom_index, source_index, sj_shift, max_headclip, max_intron
 */
struct __pyx_obj_13_rnaseq_utils_RNAseqDataset {
  PyObject_HEAD
  struct __pyx_vtabstruct_13_rnaseq_utils_RNAseqDataset *__pyx_vtab;
  PyObject *read_list;
  PyObject *chrom_array;
  PyObject *source_array;
  PyObject *chrom_lengths;
  int chrom_index;
  int source_index;
  int sj_shift;
  int max_headclip;
  int max_intron;
  PyObject *chrom_dict;
  PyObject *source_dict;
  PyObject *reference_dict;
  PyObject *gtf_config;
  PyObject *gff_config;
  PyObject *config;
  PyObject *genome;
  PyObject *label_tally;
  int s_tag;
  int e_tag;
  int capped;
  int stranded;
  int reverse;
  int ignore_ends;
  int remove_noncanonical;
  int labels_are_trimmed;
  int quality_filter;
  int verbose;
  int secondary;
  int has_genome;
  int remove_gapped_termini;
  PyObject *start_seq;
  PyObject *end_seq;
  PyObject *start_seq_rc;
  PyObject *end_seq_rc;
  PyObject *gene_delim;
  int minlen;
  int minlen_strict;
  int minlen_loose;
  float mismatch_rate;
  float error_rate;
  arrayobject *start_array;
  arrayobject *end_array;
  PyObject *sj_set;
};


/* "_rnaseq_utils.pyx":1003
 * 
 * 
 * cdef class AnnotationObject:             # <<<<<<<<<<<<<<
 *     cdef public dict attributes
 *     cdef public bint keep, parent
 */
struct __pyx_obj_13_rnaseq_utils_AnnotationObject {
  PyObject_HEAD
  struct __pyx_vtabstruct_13_rnaseq_utils_AnnotationObject *__pyx_vtab;
  PyObject *attributes;
  int keep;
  int parent;
  PyObject *format;
  PyObject *gene_id;
  PyObject *transcript_id;
  PyObject *chrom;
  PyObject *source;
  PyObject *anno_type;
  int strand;
  __pyx_ctuple_int__and_int span;
  PyObject *fields;
};


/* "_rnaseq_utils.pyx":1091
 * 
 * 
 * cdef class AnnotationDataset(RNAseqDataset):             # <<<<<<<<<<<<<<
 *     """Child of an RNAseqDataset. Parses a set of input annotations (GFF3/GTF/BED12/ELR).
 *     Has methods that allow these annotations to be merged together to
 */
struct __pyx_obj_13_rnaseq_utils_AnnotationDataset {
  struct __pyx_obj_13_rnaseq_utils_RNAseqDataset __pyx_base;
  PyObject *annotations;
  PyObject *generator;
  int number_of_assemblies;
  int counter;
  int min_reps;
  int confidence;
  float cap_bonus;
};


/* "_rnaseq_utils.pyx":1951
 *     return s_tag, e_tag, s_len, e_len
 * 
 * cdef class BAMobject:             # <<<<<<<<<<<<<<
 *     cdef readonly RNAseqDataset dataset
 *     cdef readonly list input_lines
 */
struct __pyx_obj_13_rnaseq_utils_BAMobject {
  PyObject_HEAD
  struct __pyx_vtabstruct_13_rnaseq_utils_BAMobject *__pyx_vtab;
  struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *dataset;
  PyObject *input_lines;
  float error_rate;
  int ignore_ends;
  int secondary;
  int remove_noncanonical;
  int remove_gapped_termini;
  int quality_filter;
  int max_headclip;
  int sj_shift;
  int max_intron;
};


/* "_rnaseq_utils.pyx":27
 *     cdef public float weight, coverage
 *     cdef public (float, float, float) tripleweight
 *     def __init__(self, input_data, attributes = None):             # <<<<<<<<<<<<<<
 *         """Initializes a Read Object given a tuple of input data.
 *         Requires a chromosome, strand, source, weight, a sorted tuple of
 */
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct____init__ {
  PyObject_HEAD
  PyObject *__pyx_v_input_data;
};


/* "_rnaseq_utils.pyx":54
 * 
 *         if '|' in str(input_data.weight):
 *             tripleweight = tuple(float(s) for s in str(input_data.weight).split('|'))             # <<<<<<<<<<<<<<
 *             self.weight = tripleweight[0]
 *             self.attributes['E.reads'] = tripleweight[2]
 */
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_1_genexpr {
  PyObject_HEAD
  struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct____init__ *__pyx_outer_scope;
  PyObject *__pyx_v_s;
  PyObject *__pyx_t_0;
  Py_ssize_t __pyx_t_1;
};


/* "_rnaseq_utils.pyx":1212
 *         return children_out
 * 
 *     def generate_loci(self):             # <<<<<<<<<<<<<<
 *         """Yields a contiguous chunk of all annotation objects as a list
 *         by interleaving all sorted annotations together."""
 */
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_2_generate_loci {
  PyObject_HEAD
  PyObject *__pyx_v_chrom;
  PyObject *__pyx_v_chrom_annotation_list;
  PyObject *__pyx_v_current_chunk;
  int __pyx_v_i;
  struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_item;
  PyObject *__pyx_v_k;
  int __pyx_v_left;
  Py_ssize_t __pyx_v_number_of_files;
  int __pyx_v_number_of_items;
  long __pyx_v_rightmost;
  struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self;
  PyObject *__pyx_t_0;
  Py_ssize_t __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
};


/* "_rnaseq_utils.pyx":1254
 * }
 * 
 * def array_to_blocks(list arr):             # <<<<<<<<<<<<<<
 *     """Breaks an array into a collections of (start,end) INCLUSIVE doubles
 *     that define the coordinates of all contiguous blocks in the array"""
 */
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_3_array_to_blocks {
  PyObject_HEAD
  PyObject *__pyx_v_arr;
  int __pyx_v_block_end;
  int __pyx_v_block_start;
  PyObject *__pyx_v_clean_array;
  int __pyx_9genexpr31__pyx_v_i;
  int __pyx_v_i;
  PyObject *__pyx_t_0;
  Py_ssize_t __pyx_t_1;
};


/* "_rnaseq_utils.pyx":1771
 *         return 0
 * 
 * def parse_MD_string(str mdstring):             # <<<<<<<<<<<<<<
 *     """Creates a generator object to yield the elements
 *     in an MD:Z tag from the SAM format. The elements are either
 */
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string {
  PyObject_HEAD
  PyObject *__pyx_v_c;
  PyObject *__pyx_v_current;
  int __pyx_v_is_digit;
  PyObject *__pyx_v_mdstring;
  int __pyx_v_was_digit;
  PyObject *__pyx_t_0;
  Py_ssize_t __pyx_t_1;
  Py_ssize_t __pyx_t_2;
  void *__pyx_t_3;
  int __pyx_t_4;
  Py_ssize_t __pyx_t_5;
};


/* "_rnaseq_utils.pyx":2466
 * 
 * 
 * def read_generator(fileconn, RNAseqDataset dataset, str file_type, int max_gap, float minimum_proportion, int max_intron=100000):             # <<<<<<<<<<<<<<
 *     """Yields a contiguous chunk of reads from the input file
 *     separated on either side by a gaps > max_gap"""
 */
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_5_read_generator {
  PyObject_HEAD
  PyObject *__pyx_v_add_read;
  PyObject *__pyx_v_covered_positions;
  float __pyx_v_current_cov;
  struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_dataset;
  PyObject *__pyx_v_end_positions;
  PyObject *__pyx_v_file_type;
  PyObject *__pyx_v_fileconn;
  PyObject *__pyx_v_header_line;
  __pyx_ctuple_int__and_int __pyx_9genexpr49__pyx_v_j;
  __pyx_ctuple_int__and_int __pyx_v_j;
  int __pyx_9genexpr52__pyx_v_k;
  int __pyx_v_k;
  int __pyx_v_l;
  PyObject *__pyx_v_line;
  int __pyx_v_max_gap;
  int __pyx_v_max_intron;
  float __pyx_v_minimum_proportion;
  int __pyx_v_old_chrom;
  int __pyx_v_old_l;
  int __pyx_v_old_r;
  struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_9genexpr50__pyx_v_outread;
  struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_9genexpr51__pyx_v_outread;
  struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_9genexpr53__pyx_v_outread;
  struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_outread;
  PyObject *__pyx_v_passed_positions;
  int __pyx_v_r;
  struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_read;
  float __pyx_v_read_weight;
  int __pyx_v_rightmost;
  PyObject *__pyx_v_span_length;
  PyObject *__pyx_v_span_start;
  float __pyx_v_span_weight;
  PyObject *__pyx_t_0;
  Py_ssize_t __pyx_t_1;
  PyObject *(*__pyx_t_2)(PyObject *);
};


/* "_rnaseq_utils.pyx":2551
 *     fileconn.close()
 * 
 * def generate_subchunks(list list_of_reads, list split_positions):             # <<<<<<<<<<<<<<
 *     cdef:
 *         RNAseqMapping read
 */
struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks {
  PyObject_HEAD
  int __pyx_v_i;
  PyObject *__pyx_v_ignore;
  int __pyx_v_lasti;
  PyObject *__pyx_v_list_of_reads;
  PyObject *__pyx_v_position;
  int __pyx_9genexpr54__pyx_v_r;
  int __pyx_v_r;
  struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_read;
  int __pyx_v_sp;
  PyObject *__pyx_v_split_positions;
  PyObject *__pyx_t_0;
  int __pyx_t_1;
  Py_ssize_t __pyx_t_2;
};


/* "View.MemoryView":105
 * 
 * @cname("__pyx_array")
 * cdef class array:             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */
struct __pyx_array_obj {
  PyObject_HEAD
  struct __pyx_vtabstruct_array *__pyx_vtab;
  char *data;
  Py_ssize_t len;
  char *format;
  int ndim;
  Py_ssize_t *_shape;
  Py_ssize_t *_strides;
  Py_ssize_t itemsize;
  PyObject *mode;
  PyObject *_format;
  void (*callback_free_data)(void *);
  int free_data;
  int dtype_is_object;
};


/* "View.MemoryView":279
 * 
 * @cname('__pyx_MemviewEnum')
 * cdef class Enum(object):             # <<<<<<<<<<<<<<
 *     cdef object name
 *     def __init__(self, name):
 */
struct __pyx_MemviewEnum_obj {
  PyObject_HEAD
  PyObject *name;
};


/* "View.MemoryView":330
 * 
 * @cname('__pyx_memoryview')
 * cdef class memoryview(object):             # <<<<<<<<<<<<<<
 * 
 *     cdef object obj
 */
struct __pyx_memoryview_obj {
  PyObject_HEAD
  struct __pyx_vtabstruct_memoryview *__pyx_vtab;
  PyObject *obj;
  PyObject *_size;
  PyObject *_array_interface;
  PyThread_type_lock lock;
  __pyx_atomic_int acquisition_count[2];
  __pyx_atomic_int *acquisition_count_aligned_p;
  Py_buffer view;
  int flags;
  int dtype_is_object;
  __Pyx_TypeInfo *typeinfo;
};


/* "View.MemoryView":965
 * 
 * @cname('__pyx_memoryviewslice')
 * cdef class _memoryviewslice(memoryview):             # <<<<<<<<<<<<<<
 *     "Internal class for passing memoryview slices to Python"
 * 
 */
struct __pyx_memoryviewslice_obj {
  struct __pyx_memoryview_obj __pyx_base;
  __Pyx_memviewslice from_slice;
  PyObject *from_object;
  PyObject *(*to_object_func)(char *);
  int (*to_dtype_func)(char *, PyObject *);
};



/* "_rnaseq_utils.pyx":19
 * ##############################################
 * ELdata = namedtuple('ELdata', 'chrom source strand ranges splice s_tag e_tag capped weight condensed')
 * cdef class RNAseqMapping():             # <<<<<<<<<<<<<<
 *     cdef public int chrom, source, strand, s_len, e_len
 *     cdef public list ranges, splice
 */

struct __pyx_vtabstruct_13_rnaseq_utils_RNAseqMapping {
  int (*left)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  int (*right)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  int (*get_length)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  PyObject *(*gaps)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  PyObject *(*junctions)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  int (*diff)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, PyObject *, int __pyx_skip_dispatch);
  int (*overlaps)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  __pyx_ctuple_int__and_int (*overlap_range)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  int (*shared_bases)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  int (*is_malformed)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  int (*ends_clash)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  int (*splice_match)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_splice_match *__pyx_optional_args);
  int (*antisense_match)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int, int __pyx_skip_dispatch);
  int (*sense_match)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int, int __pyx_skip_dispatch);
  int (*is_compatible)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_is_compatible *__pyx_optional_args);
  int (*is_identical)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  int (*merge)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch);
  PyObject *(*get_node_labels)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_get_node_labels *__pyx_optional_args);
  PyObject *(*write_as_elr)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_write_as_elr *__pyx_optional_args);
  PyObject *(*write_as_bed)(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *, PyObject *, PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_write_as_bed *__pyx_optional_args);
};
static struct __pyx_vtabstruct_13_rnaseq_utils_RNAseqMapping *__pyx_vtabptr_13_rnaseq_utils_RNAseqMapping;


/* "_rnaseq_utils.pyx":512
 *     'child_key_gene':'gene'
 * }
 * cdef class RNAseqDataset():             # <<<<<<<<<<<<<<
 *     cdef public list read_list, chrom_array, source_array, chrom_lengths
 *     cdef public int chrom_index, source_index, sj_shift, max_headclip, max_intron
 */

struct __pyx_vtabstruct_13_rnaseq_utils_RNAseqDataset {
  PyObject *(*make_sj_set)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, PyObject *, int __pyx_skip_dispatch);
  PyObject *(*add_source)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, PyObject *, int __pyx_skip_dispatch);
  PyObject *(*add_chrom)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, PyObject *, int __pyx_skip_dispatch);
  PyObject *(*add_read_from_BED)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqDataset_add_read_from_BED *__pyx_optional_args);
  PyObject *(*add_read)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, PyObject *, int __pyx_skip_dispatch);
  PyObject *(*add_read_from_ELR)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, PyObject *, int __pyx_skip_dispatch);
  PyObject *(*add_read_from_BAM)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, PyObject *, int __pyx_skip_dispatch);
  PyObject *(*pop_read)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqDataset_pop_read *__pyx_optional_args);
  PyObject *(*dump_header)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, int __pyx_skip_dispatch);
  PyObject *(*import_annotation)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, PyObject *, PyObject *, int __pyx_skip_dispatch);
  __pyx_ctuple_float__and_float__and_float (*add_mapping_object)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, struct __pyx_obj_13_rnaseq_utils_AnnotationObject *, PyObject *, PyObject *, int, PyObject *, int __pyx_skip_dispatch);
  struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *(*anno_to_mapping_object)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, struct __pyx_obj_13_rnaseq_utils_AnnotationObject *, PyObject *, int, int __pyx_skip_dispatch);
  struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *(*parse_bed_line)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, PyObject *, PyObject *);
  struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *(*parse_elr_line)(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *, PyObject *, PyObject *, PyObject *);
};
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/* "_rnaseq_utils.pyx":1003
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/* "_rnaseq_utils.pyx":1091
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/* "_rnaseq_utils.pyx":1951
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static CYTHON_INLINE PyObject* __Pyx_CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg);
#else
#define __Pyx_CallUnboundCMethod1(cfunc, self, arg)  __Pyx__CallUnboundCMethod1(cfunc, self, arg)
#endif

/* CallUnboundCMethod2.proto */
static PyObject* __Pyx__CallUnboundCMethod2(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg1, PyObject* arg2);
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030600B1
static CYTHON_INLINE PyObject *__Pyx_CallUnboundCMethod2(__Pyx_CachedCFunction *cfunc, PyObject *self, PyObject *arg1, PyObject *arg2);
#else
#define __Pyx_CallUnboundCMethod2(cfunc, self, arg1, arg2)  __Pyx__CallUnboundCMethod2(cfunc, self, arg1, arg2)
#endif

/* GetItemIntUnicode.proto */
#define __Pyx_GetItemInt_Unicode(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
    (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
    __Pyx_GetItemInt_Unicode_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
    (PyErr_SetString(PyExc_IndexError, "string index out of range"), (Py_UCS4)-1))
static CYTHON_INLINE Py_UCS4 __Pyx_GetItemInt_Unicode_Fast(PyObject* ustring, Py_ssize_t i,
                                                           int wraparound, int boundscheck);

/* GetModuleGlobalName.proto */
#if CYTHON_USE_DICT_VERSIONS
#define __Pyx_GetModuleGlobalName(var, name)  {\
    static PY_UINT64_T __pyx_dict_version = 0;\
    static PyObject *__pyx_dict_cached_value = NULL;\
    (var) = (likely(__pyx_dict_version == __PYX_GET_DICT_VERSION(__pyx_d))) ?\
        (likely(__pyx_dict_cached_value) ? __Pyx_NewRef(__pyx_dict_cached_value) : __Pyx_GetBuiltinName(name)) :\
        __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
}
#define __Pyx_GetModuleGlobalNameUncached(var, name)  {\
    PY_UINT64_T __pyx_dict_version;\
    PyObject *__pyx_dict_cached_value;\
    (var) = __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
}
static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value);
#else
#define __Pyx_GetModuleGlobalName(var, name)  (var) = __Pyx__GetModuleGlobalName(name)
#define __Pyx_GetModuleGlobalNameUncached(var, name)  (var) = __Pyx__GetModuleGlobalName(name)
static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name);
#endif

/* DictGetItem.proto */
#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key);
#define __Pyx_PyObject_Dict_GetItem(obj, name)\
    (likely(PyDict_CheckExact(obj)) ?\
     __Pyx_PyDict_GetItem(obj, name) : PyObject_GetItem(obj, name))
#else
#define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key)
#define __Pyx_PyObject_Dict_GetItem(obj, name)  PyObject_GetItem(obj, name)
#endif

/* SetItemInt.proto */
#define __Pyx_SetItemInt(o, i, v, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
    (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
    __Pyx_SetItemInt_Fast(o, (Py_ssize_t)i, v, is_list, wraparound, boundscheck) :\
    (is_list ? (PyErr_SetString(PyExc_IndexError, "list assignment index out of range"), -1) :\
               __Pyx_SetItemInt_Generic(o, to_py_func(i), v)))
static int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v);
static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v,
                                               int is_list, int wraparound, int boundscheck);

/* PyIntBinop.proto */
#if !CYTHON_COMPILING_IN_PYPY
static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check);
#else
#define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace, zerodivision_check)\
    (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2))
#endif

/* PyUnicode_Substring.proto */
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_Substring(
            PyObject* text, Py_ssize_t start, Py_ssize_t stop);

/* PyObjectGetMethod.proto */
static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method);

/* PyObjectCallMethod0.proto */
static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name);

/* RaiseNoneIterError.proto */
static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void);

/* UnpackTupleError.proto */
static void __Pyx_UnpackTupleError(PyObject *, Py_ssize_t index);

/* UnpackTuple2.proto */
#define __Pyx_unpack_tuple2(tuple, value1, value2, is_tuple, has_known_size, decref_tuple)\
    (likely(is_tuple || PyTuple_Check(tuple)) ?\
        (likely(has_known_size || PyTuple_GET_SIZE(tuple) == 2) ?\
            __Pyx_unpack_tuple2_exact(tuple, value1, value2, decref_tuple) :\
            (__Pyx_UnpackTupleError(tuple, 2), -1)) :\
        __Pyx_unpack_tuple2_generic(tuple, value1, value2, has_known_size, decref_tuple))
static CYTHON_INLINE int __Pyx_unpack_tuple2_exact(
    PyObject* tuple, PyObject** value1, PyObject** value2, int decref_tuple);
static int __Pyx_unpack_tuple2_generic(
    PyObject* tuple, PyObject** value1, PyObject** value2, int has_known_size, int decref_tuple);

/* dict_iter.proto */
static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* dict, int is_dict, PyObject* method_name,
                                                   Py_ssize_t* p_orig_length, int* p_is_dict);
static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* dict_or_iter, Py_ssize_t orig_length, Py_ssize_t* ppos,
                                              PyObject** pkey, PyObject** pvalue, PyObject** pitem, int is_dict);

/* PyErrExceptionMatches.proto */
#if CYTHON_FAST_THREAD_STATE
#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err)
static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err);
#else
#define __Pyx_PyErr_ExceptionMatches(err)  PyErr_ExceptionMatches(err)
#endif

/* GetAttr.proto */
static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *);

/* GetAttr3.proto */
static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *, PyObject *, PyObject *);

/* ExtTypeTest.proto */
static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type);

/* None.proto */
static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname);

/* PyDictContains.proto */
static CYTHON_INLINE int __Pyx_PyDict_ContainsTF(PyObject* item, PyObject* dict, int eq) {
    int result = PyDict_Contains(dict, item);
    return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
}

/* ListAppend.proto */
#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
    PyListObject* L = (PyListObject*) list;
    Py_ssize_t len = Py_SIZE(list);
    if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) {
        Py_INCREF(x);
        PyList_SET_ITEM(list, len, x);
        __Pyx_SET_SIZE(list, len + 1);
        return 0;
    }
    return PyList_Append(list, x);
}
#else
#define __Pyx_PyList_Append(L,x) PyList_Append(L,x)
#endif

/* pop.proto */
static CYTHON_INLINE PyObject* __Pyx__PyObject_Pop(PyObject* L);
#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
static CYTHON_INLINE PyObject* __Pyx_PyList_Pop(PyObject* L);
#define __Pyx_PyObject_Pop(L) (likely(PyList_CheckExact(L)) ?\
    __Pyx_PyList_Pop(L) : __Pyx__PyObject_Pop(L))
#else
#define __Pyx_PyList_Pop(L)  __Pyx__PyObject_Pop(L)
#define __Pyx_PyObject_Pop(L)  __Pyx__PyObject_Pop(L)
#endif

/* CallUnboundCMethod0.proto */
static PyObject* __Pyx__CallUnboundCMethod0(__Pyx_CachedCFunction* cfunc, PyObject* self);
#if CYTHON_COMPILING_IN_CPYTHON
#define __Pyx_CallUnboundCMethod0(cfunc, self)\
    (likely((cfunc)->func) ?\
        (likely((cfunc)->flag == METH_NOARGS) ?  (*((cfunc)->func))(self, NULL) :\
         (PY_VERSION_HEX >= 0x030600B1 && likely((cfunc)->flag == METH_FASTCALL) ?\
            (PY_VERSION_HEX >= 0x030700A0 ?\
                (*(__Pyx_PyCFunctionFast)(void*)(PyCFunction)(cfunc)->func)(self, &__pyx_empty_tuple, 0) :\
                (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)(cfunc)->func)(self, &__pyx_empty_tuple, 0, NULL)) :\
          (PY_VERSION_HEX >= 0x030700A0 && (cfunc)->flag == (METH_FASTCALL | METH_KEYWORDS) ?\
            (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)(cfunc)->func)(self, &__pyx_empty_tuple, 0, NULL) :\
            (likely((cfunc)->flag == (METH_VARARGS | METH_KEYWORDS)) ?  ((*(PyCFunctionWithKeywords)(void*)(PyCFunction)(cfunc)->func)(self, __pyx_empty_tuple, NULL)) :\
               ((cfunc)->flag == METH_VARARGS ?  (*((cfunc)->func))(self, __pyx_empty_tuple) :\
               __Pyx__CallUnboundCMethod0(cfunc, self)))))) :\
        __Pyx__CallUnboundCMethod0(cfunc, self))
#else
#define __Pyx_CallUnboundCMethod0(cfunc, self)  __Pyx__CallUnboundCMethod0(cfunc, self)
#endif

/* py_dict_keys.proto */
static CYTHON_INLINE PyObject* __Pyx_PyDict_Keys(PyObject* d);

/* PyObjectCallMethod1.proto */
static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg);

/* append.proto */
static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x);

/* SliceObject.proto */
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(
        PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop,
        PyObject** py_start, PyObject** py_stop, PyObject** py_slice,
        int has_cstart, int has_cstop, int wraparound);

/* pyfrozenset_new.proto */
static CYTHON_INLINE PyObject* __Pyx_PyFrozenSet_New(PyObject* it);

/* PySetContains.proto */
static CYTHON_INLINE int __Pyx_PySet_ContainsTF(PyObject* key, PyObject* set, int eq);

/* GetTopmostException.proto */
#if CYTHON_USE_EXC_INFO_STACK
static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate);
#endif

/* SaveResetException.proto */
#if CYTHON_FAST_THREAD_STATE
#define __Pyx_ExceptionSave(type, value, tb)  __Pyx__ExceptionSave(__pyx_tstate, type, value, tb)
static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
#define __Pyx_ExceptionReset(type, value, tb)  __Pyx__ExceptionReset(__pyx_tstate, type, value, tb)
static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
#else
#define __Pyx_ExceptionSave(type, value, tb)   PyErr_GetExcInfo(type, value, tb)
#define __Pyx_ExceptionReset(type, value, tb)  PyErr_SetExcInfo(type, value, tb)
#endif

/* GetException.proto */
#if CYTHON_FAST_THREAD_STATE
#define __Pyx_GetException(type, value, tb)  __Pyx__GetException(__pyx_tstate, type, value, tb)
static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
#else
static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb);
#endif

/* RaiseException.proto */
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause);

/* SliceTupleAndList.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyList_GetSlice(PyObject* src, Py_ssize_t start, Py_ssize_t stop);
static CYTHON_INLINE PyObject* __Pyx_PyTuple_GetSlice(PyObject* src, Py_ssize_t start, Py_ssize_t stop);
#else
#define __Pyx_PyList_GetSlice(seq, start, stop)   PySequence_GetSlice(seq, start, stop)
#define __Pyx_PyTuple_GetSlice(seq, start, stop)  PySequence_GetSlice(seq, start, stop)
#endif

/* unicode_iter.proto */
static CYTHON_INLINE int __Pyx_init_unicode_iteration(
    PyObject* ustring, Py_ssize_t *length, void** data, int *kind);

/* PyIntCompare.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_NeObjC(PyObject *op1, PyObject *op2, long intval, long inplace);

/* IterNext.proto */
#define __Pyx_PyIter_Next(obj) __Pyx_PyIter_Next2(obj, NULL)
static CYTHON_INLINE PyObject *__Pyx_PyIter_Next2(PyObject *, PyObject *);

/* DelItemInt.proto */
#define __Pyx_DelItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
    (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
    __Pyx_DelItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound) :\
    (is_list ? (PyErr_SetString(PyExc_IndexError, "list assignment index out of range"), -1) :\
               __Pyx_DelItem_Generic(o, to_py_func(i))))
static int __Pyx_DelItem_Generic(PyObject *o, PyObject *j);
static CYTHON_INLINE int __Pyx_DelItemInt_Fast(PyObject *o, Py_ssize_t i,
                                               int is_list, int wraparound);

/* PyIntCompare.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, long intval, long inplace);

/* py_dict_values.proto */
static CYTHON_INLINE PyObject* __Pyx_PyDict_Values(PyObject* d);

/* pop_index.proto */
static PyObject* __Pyx__PyObject_PopNewIndex(PyObject* L, PyObject* py_ix);
static PyObject* __Pyx__PyObject_PopIndex(PyObject* L, PyObject* py_ix);
#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
static PyObject* __Pyx__PyList_PopIndex(PyObject* L, PyObject* py_ix, Py_ssize_t ix);
#define __Pyx_PyObject_PopIndex(L, py_ix, ix, is_signed, type, to_py_func) (\
    (likely(PyList_CheckExact(L) && __Pyx_fits_Py_ssize_t(ix, type, is_signed))) ?\
        __Pyx__PyList_PopIndex(L, py_ix, ix) : (\
        (unlikely((py_ix) == Py_None)) ? __Pyx__PyObject_PopNewIndex(L, to_py_func(ix)) :\
            __Pyx__PyObject_PopIndex(L, py_ix)))
#define __Pyx_PyList_PopIndex(L, py_ix, ix, is_signed, type, to_py_func) (\
    __Pyx_fits_Py_ssize_t(ix, type, is_signed) ?\
        __Pyx__PyList_PopIndex(L, py_ix, ix) : (\
        (unlikely((py_ix) == Py_None)) ? __Pyx__PyObject_PopNewIndex(L, to_py_func(ix)) :\
            __Pyx__PyObject_PopIndex(L, py_ix)))
#else
#define __Pyx_PyList_PopIndex(L, py_ix, ix, is_signed, type, to_py_func)\
    __Pyx_PyObject_PopIndex(L, py_ix, ix, is_signed, type, to_py_func)
#define __Pyx_PyObject_PopIndex(L, py_ix, ix, is_signed, type, to_py_func) (\
    (unlikely((py_ix) == Py_None)) ? __Pyx__PyObject_PopNewIndex(L, to_py_func(ix)) :\
        __Pyx__PyObject_PopIndex(L, py_ix))
#endif

/* IsLittleEndian.proto */
static CYTHON_INLINE int __Pyx_Is_Little_Endian(void);

/* BufferFormatCheck.proto */
static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts);
static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
                              __Pyx_BufFmt_StackElem* stack,
                              __Pyx_TypeInfo* type);

/* BufferGetAndValidate.proto */
#define __Pyx_GetBufferAndValidate(buf, obj, dtype, flags, nd, cast, stack)\
    ((obj == Py_None || obj == NULL) ?\
    (__Pyx_ZeroBuffer(buf), 0) :\
    __Pyx__GetBufferAndValidate(buf, obj, dtype, flags, nd, cast, stack))
static int  __Pyx__GetBufferAndValidate(Py_buffer* buf, PyObject* obj,
    __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack);
static void __Pyx_ZeroBuffer(Py_buffer* buf);
static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info);
static Py_ssize_t __Pyx_minusones[] = { -1, -1, -1, -1, -1, -1, -1, -1 };
static Py_ssize_t __Pyx_zeros[] = { 0, 0, 0, 0, 0, 0, 0, 0 };

/* BufferIndexError.proto */
static void __Pyx_RaiseBufferIndexError(int axis);

/* MemviewSliceInit.proto */
#define __Pyx_BUF_MAX_NDIMS %(BUF_MAX_NDIMS)d
#define __Pyx_MEMVIEW_DIRECT   1
#define __Pyx_MEMVIEW_PTR      2
#define __Pyx_MEMVIEW_FULL     4
#define __Pyx_MEMVIEW_CONTIG   8
#define __Pyx_MEMVIEW_STRIDED  16
#define __Pyx_MEMVIEW_FOLLOW   32
#define __Pyx_IS_C_CONTIG 1
#define __Pyx_IS_F_CONTIG 2
static int __Pyx_init_memviewslice(
                struct __pyx_memoryview_obj *memview,
                int ndim,
                __Pyx_memviewslice *memviewslice,
                int memview_is_new_reference);
static CYTHON_INLINE int __pyx_add_acquisition_count_locked(
    __pyx_atomic_int *acquisition_count, PyThread_type_lock lock);
static CYTHON_INLINE int __pyx_sub_acquisition_count_locked(
    __pyx_atomic_int *acquisition_count, PyThread_type_lock lock);
#define __pyx_get_slice_count_pointer(memview) (memview->acquisition_count_aligned_p)
#define __pyx_get_slice_count(memview) (*__pyx_get_slice_count_pointer(memview))
#define __PYX_INC_MEMVIEW(slice, have_gil) __Pyx_INC_MEMVIEW(slice, have_gil, __LINE__)
#define __PYX_XDEC_MEMVIEW(slice, have_gil) __Pyx_XDEC_MEMVIEW(slice, have_gil, __LINE__)
static CYTHON_INLINE void __Pyx_INC_MEMVIEW(__Pyx_memviewslice *, int, int);
static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *, int, int);

/* Import.proto */
static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);

/* ImportFrom.proto */
static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name);

/* HasAttr.proto */
static CYTHON_INLINE int __Pyx_HasAttr(PyObject *, PyObject *);

/* StrEquals.proto */
#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals
#else
#define __Pyx_PyString_Equals __Pyx_PyBytes_Equals
#endif

/* DivInt[Py_ssize_t].proto */
static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t, Py_ssize_t);

/* UnaryNegOverflows.proto */
#define UNARY_NEG_WOULD_OVERFLOW(x)\
        (((x) < 0) & ((unsigned long)(x) == 0-(unsigned long)(x)))

static CYTHON_UNUSED int __pyx_array_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
static PyObject *__pyx_array_get_memview(struct __pyx_array_obj *); /*proto*/
/* decode_c_string_utf16.proto */
static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16(const char *s, Py_ssize_t size, const char *errors) {
    int byteorder = 0;
    return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
}
static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16LE(const char *s, Py_ssize_t size, const char *errors) {
    int byteorder = -1;
    return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
}
static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16BE(const char *s, Py_ssize_t size, const char *errors) {
    int byteorder = 1;
    return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
}

/* decode_c_string.proto */
static CYTHON_INLINE PyObject* __Pyx_decode_c_string(
         const char* cstring, Py_ssize_t start, Py_ssize_t stop,
         const char* encoding, const char* errors,
         PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors));

/* SwapException.proto */
#if CYTHON_FAST_THREAD_STATE
#define __Pyx_ExceptionSwap(type, value, tb)  __Pyx__ExceptionSwap(__pyx_tstate, type, value, tb)
static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
#else
static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb);
#endif

/* FastTypeChecks.proto */
#if CYTHON_COMPILING_IN_CPYTHON
#define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type)
static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b);
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type);
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2);
#else
#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
#define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type)
#define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2))
#endif
#define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception)

static CYTHON_UNUSED int __pyx_memoryview_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
/* ListExtend.proto */
static CYTHON_INLINE int __Pyx_PyList_Extend(PyObject* L, PyObject* v) {
#if CYTHON_COMPILING_IN_CPYTHON
    PyObject* none = _PyList_Extend((PyListObject*)L, v);
    if (unlikely(!none))
        return -1;
    Py_DECREF(none);
    return 0;
#else
    return PyList_SetSlice(L, PY_SSIZE_T_MAX, PY_SSIZE_T_MAX, v);
#endif
}

/* DivInt[long].proto */
static CYTHON_INLINE long __Pyx_div_long(long, long);

/* PyObject_GenericGetAttrNoDict.proto */
#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name);
#else
#define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr
#endif

/* PyObject_GenericGetAttr.proto */
#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name);
#else
#define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr
#endif

/* SetVTable.proto */
static int __Pyx_SetVtable(PyObject *dict, void *vtable);

/* PyObjectGetAttrStrNoError.proto */
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name);

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#define __PYX_HAVE_RT_ImportType_proto
enum __Pyx_ImportType_CheckSize {
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static PyTypeObject *__Pyx_ImportType(PyObject* module, const char *module_name, const char *class_name, size_t size, enum __Pyx_ImportType_CheckSize check_size);
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/* CLineInTraceback.proto */
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#define __Pyx_CLineForTraceback(tstate, c_line)  (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0)
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static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line);
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struct __Pyx_CodeObjectCache {
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static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
static PyCodeObject *__pyx_find_code_object(int code_line);
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);

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static void __Pyx_AddTraceback(const char *funcname, int c_line,
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#define _ARRAYARRAY_H
typedef struct arraydescr {
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    int (*setitem)(struct arrayobject *, Py_ssize_t, PyObject *);
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struct arrayobject {
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PyObject* newarrayobject(PyTypeObject *type, Py_ssize_t size,
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/* ToPyCTupleUtility.proto */
static PyObject* __pyx_convert__to_py___pyx_ctuple_int__and_int(__pyx_ctuple_int__and_int);

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/* ToPyCTupleUtility.proto */
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static int __pyx_slices_overlap(__Pyx_memviewslice *slice1,
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static int __pyx_typeinfo_cmp(__Pyx_TypeInfo *a, __Pyx_TypeInfo *b);

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static int __Pyx_ValidateAndInit_memviewslice(
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                __Pyx_TypeInfo *dtype,
                __Pyx_BufFmt_StackElem stack[],
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/* ObjectToMemviewSlice.proto */
static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_ds_float(PyObject *, int writable_flag);

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    #define __Pyx_CIMAG(z) ((z).imag())
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    #define __Pyx_CREAL(z) (__real__(z))
    #define __Pyx_CIMAG(z) (__imag__(z))
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    #define __Pyx_CREAL(z) ((z).real)
    #define __Pyx_CIMAG(z) ((z).imag)
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#if defined(__cplusplus) && CYTHON_CCOMPLEX\
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    #define __Pyx_SET_CREAL(z,x) ((z).real(x))
    #define __Pyx_SET_CIMAG(z,y) ((z).imag(y))
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    #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x)
    #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y)
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/* Arithmetic.proto */
#if CYTHON_CCOMPLEX
    #define __Pyx_c_eq_float(a, b)   ((a)==(b))
    #define __Pyx_c_sum_float(a, b)  ((a)+(b))
    #define __Pyx_c_diff_float(a, b) ((a)-(b))
    #define __Pyx_c_prod_float(a, b) ((a)*(b))
    #define __Pyx_c_quot_float(a, b) ((a)/(b))
    #define __Pyx_c_neg_float(a)     (-(a))
  #ifdef __cplusplus
    #define __Pyx_c_is_zero_float(z) ((z)==(float)0)
    #define __Pyx_c_conj_float(z)    (::std::conj(z))
    #if 1
        #define __Pyx_c_abs_float(z)     (::std::abs(z))
        #define __Pyx_c_pow_float(a, b)  (::std::pow(a, b))
    #endif
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    #define __Pyx_c_is_zero_float(z) ((z)==0)
    #define __Pyx_c_conj_float(z)    (conjf(z))
    #if 1
        #define __Pyx_c_abs_float(z)     (cabsf(z))
        #define __Pyx_c_pow_float(a, b)  (cpowf(a, b))
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    static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex);
    static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex);
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        static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex);
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    #endif
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/* Arithmetic.proto */
#if CYTHON_CCOMPLEX
    #define __Pyx_c_eq_double(a, b)   ((a)==(b))
    #define __Pyx_c_sum_double(a, b)  ((a)+(b))
    #define __Pyx_c_diff_double(a, b) ((a)-(b))
    #define __Pyx_c_prod_double(a, b) ((a)*(b))
    #define __Pyx_c_quot_double(a, b) ((a)/(b))
    #define __Pyx_c_neg_double(a)     (-(a))
  #ifdef __cplusplus
    #define __Pyx_c_is_zero_double(z) ((z)==(double)0)
    #define __Pyx_c_conj_double(z)    (::std::conj(z))
    #if 1
        #define __Pyx_c_abs_double(z)     (::std::abs(z))
        #define __Pyx_c_pow_double(a, b)  (::std::pow(a, b))
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    #define __Pyx_c_is_zero_double(z) ((z)==0)
    #define __Pyx_c_conj_double(z)    (conj(z))
    #if 1
        #define __Pyx_c_abs_double(z)     (cabs(z))
        #define __Pyx_c_pow_double(a, b)  (cpow(a, b))
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    static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex);
    static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex);
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    #if 1
        static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex);
        static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex);
    #endif
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/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);

/* CIntFromPy.proto */
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);

/* MemviewSliceCopyTemplate.proto */
static __Pyx_memviewslice
__pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs,
                                 const char *mode, int ndim,
                                 size_t sizeof_dtype, int contig_flag,
                                 int dtype_is_object);

/* CIntFromPy.proto */
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value);

/* CIntFromPy.proto */
static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *);

/* FetchCommonType.proto */
static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type);

/* CoroutineBase.proto */
typedef PyObject *(*__pyx_coroutine_body_t)(PyObject *, PyThreadState *, PyObject *);
#if CYTHON_USE_EXC_INFO_STACK
#define __Pyx_ExcInfoStruct  _PyErr_StackItem
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typedef struct {
    PyObject *exc_type;
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    PyObject *exc_traceback;
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typedef struct {
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    __Pyx_ExcInfoStruct gi_exc_state;
    PyObject *gi_weakreflist;
    PyObject *classobj;
    PyObject *yieldfrom;
    PyObject *gi_name;
    PyObject *gi_qualname;
    PyObject *gi_modulename;
    PyObject *gi_code;
    PyObject *gi_frame;
    int resume_label;
    char is_running;
} __pyx_CoroutineObject;
static __pyx_CoroutineObject *__Pyx__Coroutine_New(
    PyTypeObject *type, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure,
    PyObject *name, PyObject *qualname, PyObject *module_name);
static __pyx_CoroutineObject *__Pyx__Coroutine_NewInit(
            __pyx_CoroutineObject *gen, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure,
            PyObject *name, PyObject *qualname, PyObject *module_name);
static CYTHON_INLINE void __Pyx_Coroutine_ExceptionClear(__Pyx_ExcInfoStruct *self);
static int __Pyx_Coroutine_clear(PyObject *self);
static PyObject *__Pyx_Coroutine_Send(PyObject *self, PyObject *value);
static PyObject *__Pyx_Coroutine_Close(PyObject *self);
static PyObject *__Pyx_Coroutine_Throw(PyObject *gen, PyObject *args);
#if CYTHON_USE_EXC_INFO_STACK
#define __Pyx_Coroutine_SwapException(self)
#define __Pyx_Coroutine_ResetAndClearException(self)  __Pyx_Coroutine_ExceptionClear(&(self)->gi_exc_state)
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#define __Pyx_Coroutine_SwapException(self) {\
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    __Pyx_Coroutine_ResetFrameBackpointer(&(self)->gi_exc_state);\
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#define __Pyx_Coroutine_ResetAndClearException(self) {\
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#define __Pyx_PyGen_FetchStopIterationValue(pvalue)\
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#define __Pyx_PyGen_FetchStopIterationValue(pvalue)\
    __Pyx_PyGen__FetchStopIterationValue(__Pyx_PyThreadState_Current, pvalue)
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static int __Pyx_PyGen__FetchStopIterationValue(PyThreadState *tstate, PyObject **pvalue);
static CYTHON_INLINE void __Pyx_Coroutine_ResetFrameBackpointer(__Pyx_ExcInfoStruct *exc_state);

/* PatchModuleWithCoroutine.proto */
static PyObject* __Pyx_Coroutine_patch_module(PyObject* module, const char* py_code);

/* PatchGeneratorABC.proto */
static int __Pyx_patch_abc(void);

/* Generator.proto */
#define __Pyx_Generator_USED
static PyTypeObject *__pyx_GeneratorType = 0;
#define __Pyx_Generator_CheckExact(obj) (Py_TYPE(obj) == __pyx_GeneratorType)
#define __Pyx_Generator_New(body, code, closure, name, qualname, module_name)\
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static int __pyx_Generator_init(void);

/* CheckBinaryVersion.proto */
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/* InitStrings.proto */
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static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_left(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_right(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_get_length(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqMapping_gaps(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqMapping_junctions(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_diff(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_other, int __pyx_skip_dispatch); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_overlaps(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_skip_dispatch); /* proto*/
static __pyx_ctuple_int__and_int __pyx_f_13_rnaseq_utils_13RNAseqMapping_overlap_range(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_skip_dispatch); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_shared_bases(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_skip_dispatch); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_is_malformed(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_ends_clash(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_skip_dispatch); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_splice_match(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_splice_match *__pyx_optional_args); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_antisense_match(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_v_end_extend, int __pyx_skip_dispatch); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_sense_match(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_v_end_extend, int __pyx_skip_dispatch); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_is_compatible(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_is_compatible *__pyx_optional_args); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_is_identical(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_skip_dispatch); /* proto*/
static int __pyx_f_13_rnaseq_utils_13RNAseqMapping_merge(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqMapping_get_node_labels(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_get_node_labels *__pyx_optional_args); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqMapping_write_as_elr(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_write_as_elr *__pyx_optional_args); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqMapping_write_as_bed(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_chrom_array, PyObject *__pyx_v_source_array, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqMapping_write_as_bed *__pyx_optional_args); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqDataset_make_sj_set(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_sj_file, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqDataset_add_source(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_source_string, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqDataset_add_chrom(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_chrom_string, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqDataset_add_read_from_BED(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_bed_line, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqDataset_add_read_from_BED *__pyx_optional_args); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqDataset_add_read(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_input_data, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqDataset_add_read_from_ELR(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_elr_line, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqDataset_add_read_from_BAM(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_bam_lines, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqDataset_pop_read(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, int __pyx_skip_dispatch, struct __pyx_opt_args_13_rnaseq_utils_13RNAseqDataset_pop_read *__pyx_optional_args); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqDataset_dump_header(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_13RNAseqDataset_import_annotation(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_filename, PyObject *__pyx_v_name, int __pyx_skip_dispatch); /* proto*/
static __pyx_ctuple_float__and_float__and_float __pyx_f_13_rnaseq_utils_13RNAseqDataset_add_mapping_object(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_parent, PyObject *__pyx_v_children, PyObject *__pyx_v_name, int __pyx_v_source, PyObject *__pyx_v_object_dict, int __pyx_skip_dispatch); /* proto*/
static struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_f_13_rnaseq_utils_13RNAseqDataset_anno_to_mapping_object(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_parent, PyObject *__pyx_v_children, int __pyx_v_source, int __pyx_skip_dispatch); /* proto*/
static struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_f_13_rnaseq_utils_13RNAseqDataset_parse_bed_line(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_line, PyObject *__pyx_v_source_string); /* proto*/
static struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_f_13_rnaseq_utils_13RNAseqDataset_parse_elr_line(CYTHON_UNUSED struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_line, PyObject *__pyx_v_name, PyObject *__pyx_v_counter); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_16AnnotationObject_parse_attributes(CYTHON_UNUSED struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_attr_string, PyObject *__pyx_v_attr_format, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_17AnnotationDataset_get_transcript_fasta(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_transcript, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_17AnnotationDataset_merge_children(CYTHON_UNUSED struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, PyObject *__pyx_v_children, int __pyx_skip_dispatch); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_9BAMobject_generate_read(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
static __pyx_ctuple_int__and_int__and_int__and_int __pyx_f_13_rnaseq_utils_9BAMobject_filter_labels_by_softclip(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v_chrom, PyObject *__pyx_v_ranges, PyObject *__pyx_v_seq, int __pyx_v_s_tag, int __pyx_v_e_tag, int __pyx_v_capped, int __pyx_v_fiveprime, int __pyx_v_threeprime, int __pyx_v_strand, int __pyx_v_head, int __pyx_v_tail, CYTHON_UNUSED int __pyx_v_max_headclip, struct __pyx_opt_args_13_rnaseq_utils_9BAMobject_filter_labels_by_softclip *__pyx_optional_args); /* proto*/
static int __pyx_f_13_rnaseq_utils_9BAMobject_matches_masking_sequence(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v_chrom, int __pyx_v_position, int __pyx_v_strand, PyObject *__pyx_v_readtype, int __pyx_v_length); /* proto*/
static __pyx_ctuple_int__and_int__and_int __pyx_f_13_rnaseq_utils_9BAMobject_shift_junction(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v_chrom, int __pyx_v_left, int __pyx_v_right, int __pyx_v_strand, struct __pyx_opt_args_13_rnaseq_utils_9BAMobject_shift_junction *__pyx_optional_args); /* proto*/
static PyObject *__pyx_f_13_rnaseq_utils_9BAMobject_resolve_overlapping_mappings(CYTHON_UNUSED struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v_mappings); /* proto*/
static int __pyx_f_13_rnaseq_utils_9BAMobject_get_mapping_number(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto*/
static __pyx_ctuple_int__and_int __pyx_f_13_rnaseq_utils_9BAMobject_determine_strand(CYTHON_UNUSED struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v_line, int __pyx_v_stranded, struct __pyx_opt_args_13_rnaseq_utils_9BAMobject_determine_strand *__pyx_optional_args); /* proto*/
static int __pyx_f_13_rnaseq_utils_9BAMobject_should_skip(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v_line); /* proto*/
static int __pyx_f_13_rnaseq_utils_9BAMobject_fails_stringent_filters(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, int __pyx_v_Nmap, int __pyx_v_match_length, int __pyx_v_head, int __pyx_v_tail, int __pyx_v_errors); /* proto*/
static int __pyx_f_13_rnaseq_utils_9BAMobject_get_alignment_strand(CYTHON_UNUSED struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v_line, int __pyx_v_strand); /* proto*/
static int __pyx_f_13_rnaseq_utils_9BAMobject_check_sjdb(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v_chrom, int __pyx_v_start, int __pyx_v_end); /* proto*/
static PyObject *__pyx_array_get_memview(struct __pyx_array_obj *__pyx_v_self); /* proto*/
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static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *, int, size_t, void *, int); /*proto*/
static void __pyx_memoryview__slice_assign_scalar(char *, Py_ssize_t *, Py_ssize_t *, int, size_t, void *); /*proto*/
static PyObject *__pyx_unpickle_Enum__set_state(struct __pyx_MemviewEnum_obj *, PyObject *); /*proto*/
static __Pyx_TypeInfo __Pyx_TypeInfo_float = { "float", NULL, sizeof(float), { 0 }, 0, 'R', 0, 0 };
#define __Pyx_MODULE_NAME "_rnaseq_utils"
extern int __pyx_module_is_main__rnaseq_utils;
int __pyx_module_is_main__rnaseq_utils = 0;

/* Implementation of '_rnaseq_utils' */
static PyObject *__pyx_builtin_zip;
static PyObject *__pyx_builtin_range;
static PyObject *__pyx_builtin_enumerate;
static PyObject *__pyx_builtin_round;
static PyObject *__pyx_builtin_open;
static PyObject *__pyx_builtin_print;
static PyObject *__pyx_builtin_StopIteration;
static PyObject *__pyx_builtin_sum;
static PyObject *__pyx_builtin_KeyError;
static PyObject *__pyx_builtin_max;
static PyObject *__pyx_builtin_all;
static PyObject *__pyx_builtin_any;
static PyObject *__pyx_builtin_MemoryError;
static PyObject *__pyx_builtin_ImportError;
static PyObject *__pyx_builtin_ValueError;
static PyObject *__pyx_builtin_TypeError;
static PyObject *__pyx_builtin_Ellipsis;
static PyObject *__pyx_builtin_id;
static PyObject *__pyx_builtin_IndexError;
static const char __pyx_k_[] = "|";
static const char __pyx_k_0[] = "0";
static const char __pyx_k_1[] = "1";
static const char __pyx_k_2[] = "2";
static const char __pyx_k_A[] = "A";
static const char __pyx_k_C[] = "C";
static const char __pyx_k_D[] = "D";
static const char __pyx_k_E[] = "E";
static const char __pyx_k_G[] = "G";
static const char __pyx_k_O[] = "O";
static const char __pyx_k_S[] = "S";
static const char __pyx_k_T[] = "T";
static const char __pyx_k_U[] = "U";
static const char __pyx_k_X[] = "X";
static const char __pyx_k_c[] = "c";
static const char __pyx_k_e[] = "e";
static const char __pyx_k_i[] = "i";
static const char __pyx_k_j[] = "j";
static const char __pyx_k_k[] = "k";
static const char __pyx_k_l[] = "l";
static const char __pyx_k_r[] = "r";
static const char __pyx_k_s[] = "s";
static const char __pyx_k_x[] = "x";
static const char __pyx_k_3P[] = "3P";
static const char __pyx_k_5P[] = "5P";
static const char __pyx_k_AD[] = "AD";
static const char __pyx_k_CE[] = "CE";
static const char __pyx_k_DA[] = "DA";
static const char __pyx_k_EC[] = "EC";
static const char __pyx_k_ES[] = "ES";
static const char __pyx_k_HI[] = "HI";
static const char __pyx_k_MD[] = "MD";
static const char __pyx_k_NH[] = "NH";
static const char __pyx_k_NM[] = "NM";
static const char __pyx_k_SE[] = "SE";
static const char __pyx_k_XS[] = "XS";
static const char __pyx_k__2[] = ">";
static const char __pyx_k__3[] = "<";
static const char __pyx_k__4[] = "^";
static const char __pyx_k__5[] = "_";
static const char __pyx_k__6[] = "{}-{}";
static const char __pyx_k__7[] = "";
static const char __pyx_k__8[] = "..";
static const char __pyx_k__9[] = ".";
static const char __pyx_k_fu[] = "fu";
static const char __pyx_k_id[] = "id";
static const char __pyx_k_nM[] = "nM";
static const char __pyx_k_np[] = "np";
static const char __pyx_k_rc[] = "rc";
static const char __pyx_k_sj[] = "sj";
static const char __pyx_k_sp[] = "sp";
static const char __pyx_k_ts[] = "ts";
static const char __pyx_k_BED[] = "BED";
static const char __pyx_k_COV[] = "COV";
static const char __pyx_k_C_2[] = "#C {} {}";
static const char __pyx_k_C_3[] = "#C";
static const char __pyx_k_ELR[] = "ELR";
static const char __pyx_k_GFF[] = "GFF";
static const char __pyx_k_GTF[] = "GTF";
static const char __pyx_k_S_2[] = "#S {} {}";
static const char __pyx_k_S_3[] = "#S";
static const char __pyx_k_TAG[] = "_TAG=";
static const char __pyx_k_TEC[] = "TEC";
static const char __pyx_k_TPM[] = "TPM";
static const char __pyx_k__10[] = "+";
static const char __pyx_k__11[] = "-";
static const char __pyx_k__12[] = "{}|{}|{}";
static const char __pyx_k__13[] = "\t";
static const char __pyx_k__14[] = ",";
static const char __pyx_k__15[] = "{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\n";
static const char __pyx_k__19[] = " ";
static const char __pyx_k__20[] = "{} \"{}\";";
static const char __pyx_k__21[] = "{}={};";
static const char __pyx_k__25[] = "\n";
static const char __pyx_k__28[] = "#";
static const char __pyx_k__30[] = "{}.{}";
static const char __pyx_k__32[] = ":";
static const char __pyx_k__33[] = "\"; ";
static const char __pyx_k__34[] = " \"";
static const char __pyx_k__35[] = "\";";
static const char __pyx_k__36[] = "; ";
static const char __pyx_k__37[] = ";";
static const char __pyx_k__38[] = "\"";
static const char __pyx_k__39[] = "=";
static const char __pyx_k__57[] = "{}\t{}\t{}\t{}\n";
static const char __pyx_k__58[] = "{}:{}";
static const char __pyx_k__94[] = "*";
static const char __pyx_k_all[] = "all";
static const char __pyx_k_any[] = "any";
static const char __pyx_k_arr[] = "arr";
static const char __pyx_k_ast[] = "ast";
static const char __pyx_k_bam[] = "bam";
static const char __pyx_k_bed[] = ".bed";
static const char __pyx_k_cov[] = "cov";
static const char __pyx_k_elr[] = "elr";
static const char __pyx_k_get[] = "get";
static const char __pyx_k_gff[] = "gff";
static const char __pyx_k_gtf[] = "gtf";
static const char __pyx_k_max[] = "max";
static const char __pyx_k_new[] = "__new__";
static const char __pyx_k_obj[] = "obj";
static const char __pyx_k_pop[] = "pop";
static const char __pyx_k_pos[] = "pos";
static const char __pyx_k_sam[] = "sam";
static const char __pyx_k_sum[] = "sum";
static const char __pyx_k_sys[] = "sys";
static const char __pyx_k_zip[] = "zip";
static const char __pyx_k_ATAC[] = "ATAC";
static const char __pyx_k_CCCC[] = "CCCC";
static const char __pyx_k_CTAC[] = "CTAC";
static const char __pyx_k_CTGC[] = "CTGC";
static const char __pyx_k_CTTC[] = "CTTC";
static const char __pyx_k_GAAG[] = "GAAG";
static const char __pyx_k_GCAG[] = "GCAG";
static const char __pyx_k_GFF3[] = "GFF3";
static const char __pyx_k_GGGG[] = "GGGG";
static const char __pyx_k_GTAG[] = "GTAG";
static const char __pyx_k_GTAT[] = "GTAT";
static const char __pyx_k_Name[] = "Name";
static const char __pyx_k_None[] = "None";
static const char __pyx_k_args[] = "args";
static const char __pyx_k_axis[] = "axis";
static const char __pyx_k_base[] = "base";
static const char __pyx_k_copy[] = "copy";
static const char __pyx_k_dict[] = "__dict__";
static const char __pyx_k_diff[] = "diff";
static const char __pyx_k_exit[] = "exit";
static const char __pyx_k_exon[] = "exon";
static const char __pyx_k_full[] = "full";
static const char __pyx_k_gaps[] = "gaps";
static const char __pyx_k_gene[] = "gene";
static const char __pyx_k_init[] = "__init__";
static const char __pyx_k_keys[] = "keys";
static const char __pyx_k_left[] = "left";
static const char __pyx_k_line[] = "line";
static const char __pyx_k_mRNA[] = "mRNA";
static const char __pyx_k_main[] = "__main__";
static const char __pyx_k_mode[] = "mode";
static const char __pyx_k_name[] = "name";
static const char __pyx_k_ndim[] = "ndim";
static const char __pyx_k_open[] = "open";
static const char __pyx_k_pack[] = "pack";
static const char __pyx_k_rRNA[] = "rRNA";
static const char __pyx_k_read[] = "read";
static const char __pyx_k_sRNA[] = "sRNA";
static const char __pyx_k_send[] = "send";
static const char __pyx_k_size[] = "size";
static const char __pyx_k_sort[] = "sort";
static const char __pyx_k_span[] = "span";
static const char __pyx_k_step[] = "step";
static const char __pyx_k_stop[] = "stop";
static const char __pyx_k_tRNA[] = "tRNA";
static const char __pyx_k_test[] = "__test__";
static const char __pyx_k_0_0_0[] = "0,0,0";
static const char __pyx_k_ACGGG[] = "ACGGG";
static const char __pyx_k_ASCII[] = "ASCII";
static const char __pyx_k_False[] = "False";
static const char __pyx_k_Y_RNA[] = "Y_RNA";
static const char __pyx_k_array[] = "array";
static const char __pyx_k_atRNA[] = "atRNA";
static const char __pyx_k_bed_2[] = "bed";
static const char __pyx_k_chrom[] = "chrom";
static const char __pyx_k_class[] = "__class__";
static const char __pyx_k_close[] = "close";
static const char __pyx_k_color[] = "color";
static const char __pyx_k_dtype[] = "dtype";
static const char __pyx_k_e_tag[] = "e_tag";
static const char __pyx_k_error[] = "error";
static const char __pyx_k_flags[] = "flags";
static const char __pyx_k_items[] = "items";
static const char __pyx_k_lasti[] = "lasti";
static const char __pyx_k_lower[] = "lower";
static const char __pyx_k_merge[] = "merge";
static const char __pyx_k_miRNA[] = "miRNA";
static const char __pyx_k_ncRNA[] = "ncRNA";
static const char __pyx_k_numpy[] = "numpy";
static const char __pyx_k_old_l[] = "old_l";
static const char __pyx_k_old_r[] = "old_r";
static const char __pyx_k_other[] = "other";
static const char __pyx_k_print[] = "print";
static const char __pyx_k_range[] = "range";
static const char __pyx_k_reads[] = "reads";
static const char __pyx_k_right[] = "right";
static const char __pyx_k_round[] = "round";
static const char __pyx_k_s_tag[] = "s_tag";
static const char __pyx_k_scRNA[] = "scRNA";
static const char __pyx_k_shape[] = "shape";
static const char __pyx_k_snRNA[] = "snRNA";
static const char __pyx_k_split[] = "split";
static const char __pyx_k_start[] = "start";
static const char __pyx_k_strip[] = "strip";
static const char __pyx_k_throw[] = "throw";
static const char __pyx_k_upper[] = "upper";
static const char __pyx_k_where[] = "where";
static const char __pyx_k_zeros[] = "zeros";
static const char __pyx_k_ELdata[] = "ELdata";
static const char __pyx_k_E_left[] = "E.left";
static const char __pyx_k_Parent[] = "Parent";
static const char __pyx_k_S_left[] = "S.left";
static const char __pyx_k_append[] = "append";
static const char __pyx_k_capped[] = "capped";
static const char __pyx_k_config[] = "config";
static const char __pyx_k_elr_gz[] = "elr.gz";
static const char __pyx_k_encode[] = "encode";
static const char __pyx_k_errors[] = "errors";
static const char __pyx_k_format[] = "format";
static const char __pyx_k_genome[] = "genome";
static const char __pyx_k_header[] = "header";
static const char __pyx_k_ignore[] = "ignore";
static const char __pyx_k_import[] = "__import__";
static const char __pyx_k_lncRNA[] = "lncRNA";
static const char __pyx_k_maxgap[] = "maxgap";
static const char __pyx_k_name_2[] = "__name__";
static const char __pyx_k_offset[] = "offset";
static const char __pyx_k_parent[] = "parent";
static const char __pyx_k_pickle[] = "pickle";
static const char __pyx_k_ranges[] = "ranges";
static const char __pyx_k_reduce[] = "__reduce__";
static const char __pyx_k_rstrip[] = "rstrip";
static const char __pyx_k_scaRNA[] = "scaRNA";
static const char __pyx_k_snoRNA[] = "snoRNA";
static const char __pyx_k_source[] = "source";
static const char __pyx_k_splice[] = "splice";
static const char __pyx_k_strand[] = "strand";
static const char __pyx_k_struct[] = "struct";
static const char __pyx_k_unpack[] = "unpack";
static const char __pyx_k_update[] = "update";
static const char __pyx_k_values[] = "values";
static const char __pyx_k_weight[] = "weight";
static const char __pyx_k_25_5_23[] = "25,5,23";
static const char __pyx_k_Counter[] = "Counter";
static const char __pyx_k_E_reads[] = "E.reads";
static const char __pyx_k_E_right[] = "E.right";
static const char __pyx_k_Mt_rRNA[] = "Mt_rRNA";
static const char __pyx_k_Mt_tRNA[] = "Mt_tRNA";
static const char __pyx_k_RAN_OUT[] = "# RAN OUT";
static const char __pyx_k_SRP_RNA[] = "SRP_RNA";
static const char __pyx_k_S_reads[] = "S.reads";
static const char __pyx_k_S_right[] = "S.right";
static const char __pyx_k_current[] = "current";
static const char __pyx_k_dataset[] = "dataset";
static const char __pyx_k_end_seq[] = "end_seq";
static const char __pyx_k_float32[] = "float32";
static const char __pyx_k_fortran[] = "fortran";
static const char __pyx_k_gene_id[] = "gene_id";
static const char __pyx_k_genexpr[] = "genexpr";
static const char __pyx_k_get_tag[] = "get_tag";
static const char __pyx_k_introns[] = "introns";
static const char __pyx_k_isdigit[] = "isdigit";
static const char __pyx_k_lincRNA[] = "lincRNA";
static const char __pyx_k_lnc_RNA[] = "lnc_RNA";
static const char __pyx_k_longEnd[] = "longEnd";
static const char __pyx_k_max_gap[] = "max_gap";
static const char __pyx_k_memview[] = "memview";
static const char __pyx_k_out_tab[] = ".out.tab";
static const char __pyx_k_outread[] = "outread";
static const char __pyx_k_range_a[] = "range_a";
static const char __pyx_k_range_b[] = "range_b";
static const char __pyx_k_replace[] = "_replace";
static const char __pyx_k_reverse[] = "reverse";
static const char __pyx_k_seqtype[] = "seqtype";
static const char __pyx_k_verbose[] = "verbose";
static const char __pyx_k_34_82_37[] = "34,82,37";
static const char __pyx_k_6_74_140[] = "6,74,140";
static const char __pyx_k_80_80_80[] = "80,80,80";
static const char __pyx_k_Ellipsis[] = "Ellipsis";
static const char __pyx_k_KeyError[] = "KeyError";
static const char __pyx_k_S_capped[] = "S.capped";
static const char __pyx_k_add_read[] = "add_read";
static const char __pyx_k_atlncRNA[] = "atlncRNA";
static const char __pyx_k_bed_line[] = "bed_line";
static const char __pyx_k_children[] = "children";
static const char __pyx_k_condense[] = "condense";
static const char __pyx_k_coverage[] = "coverage";
static const char __pyx_k_deepcopy[] = "deepcopy";
static const char __pyx_k_endswith[] = "endswith";
static const char __pyx_k_fileconn[] = "fileconn";
static const char __pyx_k_filename[] = "filename";
static const char __pyx_k_getstate[] = "__getstate__";
static const char __pyx_k_is_digit[] = "is_digit";
static const char __pyx_k_is_read1[] = "is_read1";
static const char __pyx_k_is_read2[] = "is_read2";
static const char __pyx_k_itemsize[] = "itemsize";
static const char __pyx_k_leftmost[] = "leftmost";
static const char __pyx_k_mdstring[] = "mdstring";
static const char __pyx_k_min_reps[] = "min_reps";
static const char __pyx_k_misc_RNA[] = "misc_RNA";
static const char __pyx_k_otherRNA[] = "otherRNA";
static const char __pyx_k_overlaps[] = "overlaps";
static const char __pyx_k_pop_read[] = "pop_read";
static const char __pyx_k_position[] = "position";
static const char __pyx_k_pyx_type[] = "__pyx_type";
static const char __pyx_k_readline[] = "readline";
static const char __pyx_k_ribozyme[] = "ribozyme";
static const char __pyx_k_setstate[] = "__setstate__";
static const char __pyx_k_sj_shift[] = "sj_shift";
static const char __pyx_k_stranded[] = "stranded";
static const char __pyx_k_110_66_19[] = "110,66,19";
static const char __pyx_k_194_71_71[] = "194,71,71";
static const char __pyx_k_198_95_84[] = "198,95,84";
static const char __pyx_k_215_60_41[] = "215,60,41";
static const char __pyx_k_49_132_44[] = "49,132,44";
static const char __pyx_k_BAMobject[] = "BAMobject";
static const char __pyx_k_IG_C_gene[] = "IG_C_gene";
static const char __pyx_k_IG_D_gene[] = "IG_D_gene";
static const char __pyx_k_IG_J_gene[] = "IG_J_gene";
static const char __pyx_k_IG_V_gene[] = "IG_V_gene";
static const char __pyx_k_Importing[] = "Importing {}...";
static const char __pyx_k_TR_C_gene[] = "TR_C_gene";
static const char __pyx_k_TR_D_gene[] = "TR_D_gene";
static const char __pyx_k_TR_J_gene[] = "TR_J_gene";
static const char __pyx_k_TR_V_gene[] = "TR_V_gene";
static const char __pyx_k_TypeError[] = "TypeError";
static const char __pyx_k_add_chrom[] = "add_chrom";
static const char __pyx_k_anno_type[] = "anno_type";
static const char __pyx_k_antisense[] = "antisense";
static const char __pyx_k_as_string[] = "as_string";
static const char __pyx_k_block_end[] = "block_end";
static const char __pyx_k_canonical[] = "canonical";
static const char __pyx_k_cap_bonus[] = "cap_bonus";
static const char __pyx_k_condensed[] = "condensed";
static const char __pyx_k_enumerate[] = "enumerate";
static const char __pyx_k_file_type[] = "file_type";
static const char __pyx_k_guide_RNA[] = "guide_RNA";
static const char __pyx_k_is_paired[] = "is_paired";
static const char __pyx_k_junctions[] = "junctions";
static const char __pyx_k_label_len[] = "label_len";
static const char __pyx_k_longStart[] = "longStart";
static const char __pyx_k_name_attr[] = "name_attr";
static const char __pyx_k_old_chrom[] = "old_chrom";
static const char __pyx_k_pre_miRNA[] = "pre_miRNA";
static const char __pyx_k_pyx_state[] = "__pyx_state";
static const char __pyx_k_reduce_ex[] = "__reduce_ex__";
static const char __pyx_k_reference[] = "reference";
static const char __pyx_k_rightmost[] = "rightmost";
static const char __pyx_k_secondary[] = "secondary";
static const char __pyx_k_start_seq[] = "start_seq";
static const char __pyx_k_threshold[] = "threshold";
static const char __pyx_k_was_digit[] = "was_digit";
static const char __pyx_k_203_98_130[] = "203,98,130";
static const char __pyx_k_249_185_54[] = "249,185,54";
static const char __pyx_k_56_114_168[] = "56,114,168";
static const char __pyx_k_79_153_186[] = "79,153,186";
static const char __pyx_k_IG_LV_gene[] = "IG_LV_gene";
static const char __pyx_k_IndexError[] = "IndexError";
static const char __pyx_k_ValueError[] = "ValueError";
static const char __pyx_k_add_source[] = "add_source";
static const char __pyx_k_attributes[] = "attributes";
static const char __pyx_k_bed_colors[] = "bed_colors";
static const char __pyx_k_confidence[] = "confidence";
static const char __pyx_k_end_extend[] = "end_extend";
static const char __pyx_k_ends_clash[] = "ends_clash";
static const char __pyx_k_endweights[] = "endweights";
static const char __pyx_k_error_rate[] = "error_rate";
static const char __pyx_k_gene_delim[] = "gene_delim";
static const char __pyx_k_get_length[] = "get_length";
static const char __pyx_k_gff_config[] = "gff_config";
static const char __pyx_k_gtf_config[] = "gtf_config";
static const char __pyx_k_input_data[] = "input_data";
static const char __pyx_k_is_reverse[] = "is_reverse";
static const char __pyx_k_label_type[] = "label_type";
static const char __pyx_k_max_intron[] = "max_intron";
static const char __pyx_k_namedtuple[] = "namedtuple";
static const char __pyx_k_nuc_to_int[] = "nuc_to_int";
static const char __pyx_k_pseudogene[] = "pseudogene";
static const char __pyx_k_pyx_result[] = "__pyx_result";
static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__";
static const char __pyx_k_query_name[] = "query_name";
static const char __pyx_k_span_start[] = "span_start";
static const char __pyx_k_transcript[] = "transcript";
static const char __pyx_k_120_120_120[] = "120,120,120";
static const char __pyx_k_139_137_138[] = "139,137,138";
static const char __pyx_k_153_108_206[] = "153,108,206";
static const char __pyx_k_155_105_178[] = "155,105,178";
static const char __pyx_k_180_155_100[] = "180,155,100";
static const char __pyx_k_ImportError[] = "ImportError";
static const char __pyx_k_MemoryError[] = "MemoryError";
static const char __pyx_k_PickleError[] = "PickleError";
static const char __pyx_k_RNase_P_RNA[] = "RNase_P_RNA";
static const char __pyx_k_anno_string[] = "anno_string";
static const char __pyx_k_attr_format[] = "attr_format";
static const char __pyx_k_attr_string[] = "attr_string";
static const char __pyx_k_block_start[] = "block_start";
static const char __pyx_k_child_types[] = "child_types";
static const char __pyx_k_chrom_array[] = "chrom_array";
static const char __pyx_k_cigartuples[] = "cigartuples";
static const char __pyx_k_clean_array[] = "clean_array";
static const char __pyx_k_collections[] = "collections";
static const char __pyx_k_config_dict[] = "config_dict";
static const char __pyx_k_current_cov[] = "current_cov";
static const char __pyx_k_dump_header[] = "dump_header";
static const char __pyx_k_header_line[] = "header_line";
static const char __pyx_k_ignore_ends[] = "ignore_ends";
static const char __pyx_k_input_lines[] = "input_lines";
static const char __pyx_k_is_unmapped[] = "is_unmapped";
static const char __pyx_k_make_sj_set[] = "make_sj_set";
static const char __pyx_k_object_dict[] = "object_dict";
static const char __pyx_k_oligo_match[] = "oligo_match";
static const char __pyx_k_read_format[] = "read_format";
static const char __pyx_k_read_weight[] = "read_weight";
static const char __pyx_k_require_cap[] = "require_cap";
static const char __pyx_k_sense_match[] = "sense_match";
static const char __pyx_k_span_length[] = "span_length";
static const char __pyx_k_span_weight[] = "span_weight";
static const char __pyx_k_depth_matrix[] = "depth_matrix";
static const char __pyx_k_genome_fasta[] = "genome_fasta";
static const char __pyx_k_gff_defaults[] = "gff_defaults";
static const char __pyx_k_gtf_defaults[] = "gtf_defaults";
static const char __pyx_k_is_identical[] = "is_identical";
static const char __pyx_k_is_malformed[] = "is_malformed";
static const char __pyx_k_is_secondary[] = "is_secondary";
static const char __pyx_k_literal_eval[] = "literal_eval";
static const char __pyx_k_mRNA_TE_gene[] = "mRNA_TE_gene";
static const char __pyx_k_macro_lncRNA[] = "macro_lncRNA";
static const char __pyx_k_max_headclip[] = "max_headclip";
static const char __pyx_k_minlen_loose[] = "minlen_loose";
static const char __pyx_k_parent_types[] = "parent_types";
static const char __pyx_k_pyx_checksum[] = "__pyx_checksum";
static const char __pyx_k_reference_id[] = "reference_id";
static const char __pyx_k_rnaseq_utils[] = "_rnaseq_utils";
static const char __pyx_k_score_column[] = "score_column";
static const char __pyx_k_shared_bases[] = "shared_bases";
static const char __pyx_k_source_array[] = "source_array";
static const char __pyx_k_splice_match[] = "splice_match";
static const char __pyx_k_stringsource[] = "stringsource";
static const char __pyx_k_write_as_bed[] = "write_as_bed";
static const char __pyx_k_write_as_elr[] = "write_as_elr";
static const char __pyx_k_write_as_gtf[] = "write_as_gtf";
static const char __pyx_k_IG_pseudogene[] = "IG_pseudogene";
static const char __pyx_k_RNAseqDataset[] = "RNAseqDataset";
static const char __pyx_k_RNAseqMapping[] = "RNAseqMapping";
static const char __pyx_k_RNase_MRP_RNA[] = "RNase_MRP_RNA";
static const char __pyx_k_StopIteration[] = "StopIteration";
static const char __pyx_k_antisense_RNA[] = "antisense_RNA";
static const char __pyx_k_chrom_lengths[] = "chrom_lengths";
static const char __pyx_k_end_positions[] = "end_positions";
static const char __pyx_k_generate_loci[] = "generate_loci";
static const char __pyx_k_generate_read[] = "generate_read";
static const char __pyx_k_gtf_colorcode[] = "gtf_colorcode";
static const char __pyx_k_ignore_source[] = "ignore_source";
static const char __pyx_k_import_genome[] = "import_genome";
static const char __pyx_k_is_compatible[] = "is_compatible";
static const char __pyx_k_list_of_reads[] = "list_of_reads";
static const char __pyx_k_minlen_strict[] = "minlen_strict";
static const char __pyx_k_mismatch_rate[] = "mismatch_rate";
static const char __pyx_k_overlap_range[] = "overlap_range";
static const char __pyx_k_pyx_getbuffer[] = "__pyx_getbuffer";
static const char __pyx_k_reduce_cython[] = "__reduce_cython__";
static const char __pyx_k_source_string[] = "source_string";
static const char __pyx_k_transcript_id[] = "transcript_id";
static const char __pyx_k_child_key_gene[] = "child_key_gene";
static const char __pyx_k_is_proper_pair[] = "is_proper_pair";
static const char __pyx_k_merge_children[] = "merge_children";
static const char __pyx_k_non_stop_decay[] = "non_stop_decay";
static const char __pyx_k_protein_coding[] = "protein_coding";
static const char __pyx_k_quality_filter[] = "quality_filter";
static const char __pyx_k_query_sequence[] = "query_sequence";
static const char __pyx_k_read_generator[] = "read_generator";
static const char __pyx_k_reference_name[] = "reference_name";
static const char __pyx_k_sense_intronic[] = "sense_intronic";
static const char __pyx_k_telomerase_RNA[] = "telomerase_RNA";
static const char __pyx_k_use_attributes[] = "use_attributes";
static const char __pyx_k_IG_C_pseudogene[] = "IG_C_pseudogene";
static const char __pyx_k_IG_D_pseudogene[] = "IG_D_pseudogene";
static const char __pyx_k_IG_V_pseudogene[] = "IG_V_pseudogene";
static const char __pyx_k_TR_J_pseudogene[] = "TR_J_pseudogene";
static const char __pyx_k_TR_V_pseudogene[] = "TR_V_pseudogene";
static const char __pyx_k_View_MemoryView[] = "View.MemoryView";
static const char __pyx_k_allocate_buffer[] = "allocate_buffer";
static const char __pyx_k_antisense_match[] = "antisense_match";
static const char __pyx_k_array_to_blocks[] = "array_to_blocks";
static const char __pyx_k_config_defaults[] = "config_defaults";
static const char __pyx_k_dtype_is_object[] = "dtype_is_object";
static const char __pyx_k_get_node_labels[] = "get_node_labels";
static const char __pyx_k_parent_key_gene[] = "parent_key_gene";
static const char __pyx_k_parse_MD_string[] = "parse_MD_string";
static const char __pyx_k_pyx_PickleError[] = "__pyx_PickleError";
static const char __pyx_k_reference_start[] = "reference_start";
static const char __pyx_k_retained_intron[] = "retained_intron";
static const char __pyx_k_setstate_cython[] = "__setstate_cython__";
static const char __pyx_k_split_positions[] = "split_positions";
static const char __pyx_k_AnnotationObject[] = "AnnotationObject";
static const char __pyx_k_annotation_files[] = "annotation_files";
static const char __pyx_k_antisense_lncRNA[] = "antisense_lncRNA";
static const char __pyx_k_is_supplementary[] = "is_supplementary";
static const char __pyx_k_parse_attributes[] = "parse_attributes";
static const char __pyx_k_passed_positions[] = "passed_positions";
static const char __pyx_k_print_attributes[] = "print_attributes";
static const char __pyx_k_pseudogenic_exon[] = "pseudogenic_exon";
static const char __pyx_k_record_artifacts[] = "record_artifacts";
static const char __pyx_k_rnaseq_utils_pyx[] = "_rnaseq_utils.pyx";
static const char __pyx_k_AnnotationDataset[] = "AnnotationDataset";
static const char __pyx_k_add_read_from_BAM[] = "add_read_from_BAM";
static const char __pyx_k_add_read_from_BED[] = "add_read_from_BED";
static const char __pyx_k_add_read_from_ELR[] = "add_read_from_ELR";
static const char __pyx_k_covered_positions[] = "covered_positions";
static const char __pyx_k_import_annotation[] = "import_annotation";
static const char __pyx_k_pyx_unpickle_Enum[] = "__pyx_unpickle_Enum";
static const char __pyx_k_sense_overlapping[] = "sense_overlapping";
static const char __pyx_k_add_mapping_object[] = "add_mapping_object";
static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback";
static const char __pyx_k_gaps_are_junctions[] = "gaps_are_junctions";
static const char __pyx_k_generate_subchunks[] = "generate_subchunks";
static const char __pyx_k_get_reference_name[] = "get_reference_name";
static const char __pyx_k_labels_are_trimmed[] = "labels_are_trimmed";
static const char __pyx_k_minimum_proportion[] = "minimum_proportion";
static const char __pyx_k_nontranslating_CDS[] = "nontranslating_CDS";
static const char __pyx_k_primary_transcript[] = "primary_transcript";
static const char __pyx_k_strided_and_direct[] = "<strided and direct>";
static const char __pyx_k_unitary_pseudogene[] = "unitary_pseudogene";
static const char __pyx_k_adjust_splice_sites[] = "adjust_splice_sites";
static const char __pyx_k_remove_noncanonical[] = "remove_noncanonical";
static const char __pyx_k_RRRRRRRRRRRRRRRRRRRR[] = "RRRRRRRRRRRRRRRRRRRR";
static const char __pyx_k_child_key_transcript[] = "child_key_transcript";
static const char __pyx_k_confidence_threshold[] = "confidence_threshold";
static const char __pyx_k_get_transcript_fasta[] = "get_transcript_fasta";
static const char __pyx_k_processed_pseudogene[] = "processed_pseudogene";
static const char __pyx_k_processed_transcript[] = "processed_transcript";
static const char __pyx_k_remove_terminal_gaps[] = "remove_terminal_gaps";
static const char __pyx_k_strided_and_indirect[] = "<strided and indirect>";
static const char __pyx_k_contiguous_and_direct[] = "<contiguous and direct>";
static const char __pyx_k_evaluate_splice_sites[] = "evaluate_splice_sites";
static const char __pyx_k_init___locals_genexpr[] = "__init__.<locals>.genexpr";
static const char __pyx_k_parent_key_transcript[] = "parent_key_transcript";
static const char __pyx_k_remove_gapped_termini[] = "remove_gapped_termini";
static const char __pyx_k_MemoryView_of_r_object[] = "<MemoryView of %r object>";
static const char __pyx_k_anno_to_mapping_object[] = "anno_to_mapping_object";
static const char __pyx_k_polymorphic_pseudogene[] = "polymorphic_pseudogene";
static const char __pyx_k_pseudogenic_transcript[] = "pseudogenic_transcript";
static const char __pyx_k_pyx_unpickle_BAMobject[] = "__pyx_unpickle_BAMobject";
static const char __pyx_k_unprocessed_pseudogene[] = "unprocessed_pseudogene";
static const char __pyx_k_MemoryView_of_r_at_0x_x[] = "<MemoryView of %r at 0x%x>";
static const char __pyx_k_contiguous_and_indirect[] = "<contiguous and indirect>";
static const char __pyx_k_nonsense_mediated_decay[] = "nonsense_mediated_decay";
static const char __pyx_k_3prime_overlapping_ncRNA[] = "3prime_overlapping_ncRNA";
static const char __pyx_k_Cannot_index_with_type_s[] = "Cannot index with type '%s'";
static const char __pyx_k_Invalid_shape_in_axis_d_d[] = "Invalid shape in axis %d: %d.";
static const char __pyx_k_pyx_unpickle_RNAseqDataset[] = "__pyx_unpickle_RNAseqDataset";
static const char __pyx_k_pyx_unpickle_RNAseqMapping[] = "__pyx_unpickle_RNAseqMapping";
static const char __pyx_k_itemsize_0_for_cython_array[] = "itemsize <= 0 for cython.array";
static const char __pyx_k_bidirectional_promoter_lncRNA[] = "bidirectional_promoter_lncRNA";
static const char __pyx_k_pyx_unpickle_AnnotationObject[] = "__pyx_unpickle_AnnotationObject";
static const char __pyx_k_unable_to_allocate_array_data[] = "unable to allocate array data.";
static const char __pyx_k_pyx_unpickle_AnnotationDataset[] = "__pyx_unpickle_AnnotationDataset";
static const char __pyx_k_strided_and_direct_or_indirect[] = "<strided and direct or indirect>";
static const char __pyx_k_transcribed_unitary_pseudogene[] = "transcribed_unitary_pseudogene";
static const char __pyx_k_AnnotationDataset_generate_loci[] = "AnnotationDataset.generate_loci";
static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import";
static const char __pyx_k_translated_processed_pseudogene[] = "translated_processed_pseudogene";
static const char __pyx_k_Buffer_view_does_not_expose_stri[] = "Buffer view does not expose strides";
static const char __pyx_k_Can_only_create_a_buffer_that_is[] = "Can only create a buffer that is contiguous in memory.";
static const char __pyx_k_Cannot_assign_to_read_only_memor[] = "Cannot assign to read-only memoryview";
static const char __pyx_k_Cannot_create_writable_memory_vi[] = "Cannot create writable memory view from read-only memoryview";
static const char __pyx_k_ERROR_splice_file_not_recognized[] = "ERROR: --splice file not recognized. Provide SJ.out.tab or BED6.";
static const char __pyx_k_Empty_shape_tuple_for_cython_arr[] = "Empty shape tuple for cython.array";
static const char __pyx_k_For_BED12_GTF_GFF3_use_reference[] = "For BED12/GTF/GFF3, use --reference.";
static const char __pyx_k_Incompatible_checksums_0x_x_vs_0[] = "Incompatible checksums (0x%x vs (0x58f1cad, 0xc9458fb, 0x1a371b8) = (attributes, capped, chrom, complete, condensed, coverage, e_len, e_tag, is_reference, ranges, s_len, s_tag, source, span, splice, strand, tripleweight, weight))";
static const char __pyx_k_Indirect_dimensions_not_supporte[] = "Indirect dimensions not supported";
static const char __pyx_k_Invalid_mode_expected_c_or_fortr[] = "Invalid mode, expected 'c' or 'fortran', got %s";
static const char __pyx_k_Out_of_bounds_on_buffer_access_a[] = "Out of bounds on buffer access (axis %d)";
static const char __pyx_k_Unable_to_convert_item_to_object[] = "Unable to convert item to object";
static const char __pyx_k_bookend_core_cython_utils__fasta[] = "bookend.core.cython_utils._fasta_utils";
static const char __pyx_k_chrom_source_strand_ranges_splic[] = "chrom source strand ranges splice s_tag e_tag capped weight condensed";
static const char __pyx_k_got_differing_extents_in_dimensi[] = "got differing extents in dimension %d (got %d and %d)";
static const char __pyx_k_no_default___reduce___due_to_non[] = "no default __reduce__ due to non-trivial __cinit__";
static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import";
static const char __pyx_k_transcribed_processed_pseudogene[] = "transcribed_processed_pseudogene";
static const char __pyx_k_transcribed_unprocessed_pseudoge[] = "transcribed_unprocessed_pseudogene";
static const char __pyx_k_translated_unprocessed_pseudogen[] = "translated_unprocessed_pseudogene";
static const char __pyx_k_unable_to_allocate_shape_and_str[] = "unable to allocate shape and strides.";
static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_2[] = "Incompatible checksums (0x%x vs (0x572d69e, 0xae3a5f0, 0xb872da6) = (capped, chrom_array, chrom_dict, chrom_index, chrom_lengths, config, e_tag, end_array, end_seq, end_seq_rc, error_rate, gene_delim, genome, gff_config, gtf_config, has_genome, ignore_ends, label_tally, labels_are_trimmed, max_headclip, max_intron, minlen, minlen_loose, minlen_strict, mismatch_rate, quality_filter, read_list, reference_dict, remove_gapped_termini, remove_noncanonical, reverse, s_tag, secondary, sj_set, sj_shift, source_array, source_dict, source_index, start_array, start_seq, start_seq_rc, stranded, verbose))";
static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_3[] = "Incompatible checksums (0x%x vs (0xc8c7f26, 0x3828266, 0x01593e1) = (anno_type, attributes, chrom, fields, format, gene_id, keep, parent, source, span, strand, transcript_id))";
static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_4[] = "Incompatible checksums (0x%x vs (0x6091902, 0x2c4863e, 0x890379c) = (annotations, cap_bonus, capped, chrom_array, chrom_dict, chrom_index, chrom_lengths, confidence, config, counter, e_tag, end_array, end_seq, end_seq_rc, error_rate, gene_delim, generator, genome, gff_config, gtf_config, has_genome, ignore_ends, label_tally, labels_are_trimmed, max_headclip, max_intron, min_reps, minlen, minlen_loose, minlen_strict, mismatch_rate, number_of_assemblies, quality_filter, read_list, reference_dict, remove_gapped_termini, remove_noncanonical, reverse, s_tag, secondary, sj_set, sj_shift, source_array, source_dict, source_index, start_array, start_seq, start_seq_rc, stranded, verbose))";
static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_5[] = "Incompatible checksums (0x%x vs (0x2c1ae22, 0xdb80cb7, 0x67761ee) = (dataset, error_rate, ignore_ends, input_lines, max_headclip, max_intron, quality_filter, remove_gapped_termini, remove_noncanonical, secondary, sj_shift))";
static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_6[] = "Incompatible checksums (0x%x vs (0xb068931, 0x82a3537, 0x6ae9995) = (name))";
static PyObject *__pyx_kp_u_;
static PyObject *__pyx_kp_u_0;
static PyObject *__pyx_kp_u_0_0_0;
static PyObject *__pyx_kp_u_1;
static PyObject *__pyx_kp_u_110_66_19;
static PyObject *__pyx_kp_u_120_120_120;
static PyObject *__pyx_kp_u_139_137_138;
static PyObject *__pyx_kp_u_153_108_206;
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static PyObject *__pyx_kp_u_180_155_100;
static PyObject *__pyx_kp_u_194_71_71;
static PyObject *__pyx_kp_u_198_95_84;
static PyObject *__pyx_kp_u_2;
static PyObject *__pyx_kp_u_203_98_130;
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static PyObject *__pyx_kp_u_34_82_37;
static PyObject *__pyx_kp_u_3P;
static PyObject *__pyx_kp_u_3prime_overlapping_ncRNA;
static PyObject *__pyx_kp_u_49_132_44;
static PyObject *__pyx_kp_u_56_114_168;
static PyObject *__pyx_kp_u_5P;
static PyObject *__pyx_kp_u_6_74_140;
static PyObject *__pyx_kp_u_79_153_186;
static PyObject *__pyx_kp_u_80_80_80;
static PyObject *__pyx_n_u_A;
static PyObject *__pyx_n_u_ACGGG;
static PyObject *__pyx_n_u_AD;
static PyObject *__pyx_n_s_ASCII;
static PyObject *__pyx_n_u_ATAC;
static PyObject *__pyx_n_s_AnnotationDataset;
static PyObject *__pyx_n_s_AnnotationDataset_generate_loci;
static PyObject *__pyx_n_s_AnnotationObject;
static PyObject *__pyx_n_s_BAMobject;
static PyObject *__pyx_n_u_BED;
static PyObject *__pyx_kp_s_Buffer_view_does_not_expose_stri;
static PyObject *__pyx_n_u_C;
static PyObject *__pyx_n_u_CCCC;
static PyObject *__pyx_n_u_CE;
static PyObject *__pyx_n_u_COV;
static PyObject *__pyx_n_u_CTAC;
static PyObject *__pyx_n_u_CTGC;
static PyObject *__pyx_n_u_CTTC;
static PyObject *__pyx_kp_u_C_2;
static PyObject *__pyx_kp_u_C_3;
static PyObject *__pyx_kp_s_Can_only_create_a_buffer_that_is;
static PyObject *__pyx_kp_s_Cannot_assign_to_read_only_memor;
static PyObject *__pyx_kp_s_Cannot_create_writable_memory_vi;
static PyObject *__pyx_kp_s_Cannot_index_with_type_s;
static PyObject *__pyx_n_s_Counter;
static PyObject *__pyx_n_u_D;
static PyObject *__pyx_n_u_DA;
static PyObject *__pyx_n_u_E;
static PyObject *__pyx_n_u_EC;
static PyObject *__pyx_n_u_ELR;
static PyObject *__pyx_n_s_ELdata;
static PyObject *__pyx_n_u_ELdata;
static PyObject *__pyx_kp_u_ERROR_splice_file_not_recognized;
static PyObject *__pyx_n_u_ES;
static PyObject *__pyx_kp_u_E_left;
static PyObject *__pyx_kp_u_E_reads;
static PyObject *__pyx_kp_u_E_right;
static PyObject *__pyx_n_s_Ellipsis;
static PyObject *__pyx_kp_s_Empty_shape_tuple_for_cython_arr;
static PyObject *__pyx_n_u_False;
static PyObject *__pyx_kp_u_For_BED12_GTF_GFF3_use_reference;
static PyObject *__pyx_n_u_G;
static PyObject *__pyx_n_u_GAAG;
static PyObject *__pyx_n_u_GCAG;
static PyObject *__pyx_n_u_GFF;
static PyObject *__pyx_n_u_GFF3;
static PyObject *__pyx_n_u_GGGG;
static PyObject *__pyx_n_u_GTAG;
static PyObject *__pyx_n_u_GTAT;
static PyObject *__pyx_n_u_GTF;
static PyObject *__pyx_n_u_HI;
static PyObject *__pyx_n_u_IG_C_gene;
static PyObject *__pyx_n_u_IG_C_pseudogene;
static PyObject *__pyx_n_u_IG_D_gene;
static PyObject *__pyx_n_u_IG_D_pseudogene;
static PyObject *__pyx_n_u_IG_J_gene;
static PyObject *__pyx_n_u_IG_LV_gene;
static PyObject *__pyx_n_u_IG_V_gene;
static PyObject *__pyx_n_u_IG_V_pseudogene;
static PyObject *__pyx_n_u_IG_pseudogene;
static PyObject *__pyx_n_s_ImportError;
static PyObject *__pyx_kp_u_Importing;
static PyObject *__pyx_kp_s_Incompatible_checksums_0x_x_vs_0;
static PyObject *__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_2;
static PyObject *__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_3;
static PyObject *__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_4;
static PyObject *__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_5;
static PyObject *__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_6;
static PyObject *__pyx_n_s_IndexError;
static PyObject *__pyx_kp_s_Indirect_dimensions_not_supporte;
static PyObject *__pyx_kp_s_Invalid_mode_expected_c_or_fortr;
static PyObject *__pyx_kp_s_Invalid_shape_in_axis_d_d;
static PyObject *__pyx_n_s_KeyError;
static PyObject *__pyx_n_u_MD;
static PyObject *__pyx_n_s_MemoryError;
static PyObject *__pyx_kp_s_MemoryView_of_r_at_0x_x;
static PyObject *__pyx_kp_s_MemoryView_of_r_object;
static PyObject *__pyx_n_u_Mt_rRNA;
static PyObject *__pyx_n_u_Mt_tRNA;
static PyObject *__pyx_n_u_NH;
static PyObject *__pyx_n_u_NM;
static PyObject *__pyx_n_u_Name;
static PyObject *__pyx_n_u_None;
static PyObject *__pyx_n_b_O;
static PyObject *__pyx_kp_s_Out_of_bounds_on_buffer_access_a;
static PyObject *__pyx_n_u_Parent;
static PyObject *__pyx_n_s_PickleError;
static PyObject *__pyx_kp_u_RAN_OUT;
static PyObject *__pyx_n_s_RNAseqDataset;
static PyObject *__pyx_n_s_RNAseqMapping;
static PyObject *__pyx_n_u_RNase_MRP_RNA;
static PyObject *__pyx_n_u_RNase_P_RNA;
static PyObject *__pyx_n_u_RRRRRRRRRRRRRRRRRRRR;
static PyObject *__pyx_n_u_S;
static PyObject *__pyx_n_u_SE;
static PyObject *__pyx_n_u_SRP_RNA;
static PyObject *__pyx_kp_u_S_2;
static PyObject *__pyx_kp_u_S_3;
static PyObject *__pyx_kp_u_S_capped;
static PyObject *__pyx_kp_u_S_left;
static PyObject *__pyx_kp_u_S_reads;
static PyObject *__pyx_kp_u_S_right;
static PyObject *__pyx_n_s_StopIteration;
static PyObject *__pyx_n_u_T;
static PyObject *__pyx_kp_u_TAG;
static PyObject *__pyx_n_u_TEC;
static PyObject *__pyx_n_u_TPM;
static PyObject *__pyx_n_u_TR_C_gene;
static PyObject *__pyx_n_u_TR_D_gene;
static PyObject *__pyx_n_u_TR_J_gene;
static PyObject *__pyx_n_u_TR_J_pseudogene;
static PyObject *__pyx_n_u_TR_V_gene;
static PyObject *__pyx_n_u_TR_V_pseudogene;
static PyObject *__pyx_n_s_TypeError;
static PyObject *__pyx_n_u_U;
static PyObject *__pyx_kp_s_Unable_to_convert_item_to_object;
static PyObject *__pyx_n_s_ValueError;
static PyObject *__pyx_n_s_View_MemoryView;
static PyObject *__pyx_n_u_X;
static PyObject *__pyx_n_u_XS;
static PyObject *__pyx_n_u_Y_RNA;
static PyObject *__pyx_kp_u__10;
static PyObject *__pyx_kp_u__11;
static PyObject *__pyx_kp_u__12;
static PyObject *__pyx_kp_u__13;
static PyObject *__pyx_kp_u__14;
static PyObject *__pyx_kp_u__15;
static PyObject *__pyx_kp_u__19;
static PyObject *__pyx_kp_u__2;
static PyObject *__pyx_kp_u__20;
static PyObject *__pyx_kp_u__21;
static PyObject *__pyx_kp_u__25;
static PyObject *__pyx_kp_u__28;
static PyObject *__pyx_kp_u__3;
static PyObject *__pyx_kp_u__30;
static PyObject *__pyx_kp_u__32;
static PyObject *__pyx_kp_u__33;
static PyObject *__pyx_kp_u__34;
static PyObject *__pyx_kp_u__35;
static PyObject *__pyx_kp_u__36;
static PyObject *__pyx_kp_u__37;
static PyObject *__pyx_kp_u__38;
static PyObject *__pyx_kp_u__39;
static PyObject *__pyx_kp_u__4;
static PyObject *__pyx_n_u__5;
static PyObject *__pyx_kp_u__57;
static PyObject *__pyx_kp_u__58;
static PyObject *__pyx_kp_u__6;
static PyObject *__pyx_kp_u__7;
static PyObject *__pyx_kp_u__8;
static PyObject *__pyx_kp_u__9;
static PyObject *__pyx_n_s__94;
static PyObject *__pyx_n_s_add_chrom;
static PyObject *__pyx_n_s_add_mapping_object;
static PyObject *__pyx_n_s_add_read;
static PyObject *__pyx_n_s_add_read_from_BAM;
static PyObject *__pyx_n_s_add_read_from_BED;
static PyObject *__pyx_n_s_add_read_from_ELR;
static PyObject *__pyx_n_s_add_source;
static PyObject *__pyx_n_s_adjust_splice_sites;
static PyObject *__pyx_n_s_all;
static PyObject *__pyx_n_s_allocate_buffer;
static PyObject *__pyx_n_s_anno_string;
static PyObject *__pyx_n_s_anno_to_mapping_object;
static PyObject *__pyx_n_u_anno_type;
static PyObject *__pyx_n_s_annotation_files;
static PyObject *__pyx_n_u_antisense;
static PyObject *__pyx_n_u_antisense_RNA;
static PyObject *__pyx_n_u_antisense_lncRNA;
static PyObject *__pyx_n_s_antisense_match;
static PyObject *__pyx_n_s_any;
static PyObject *__pyx_n_s_append;
static PyObject *__pyx_n_s_args;
static PyObject *__pyx_n_s_arr;
static PyObject *__pyx_n_s_array;
static PyObject *__pyx_n_s_array_to_blocks;
static PyObject *__pyx_n_s_as_string;
static PyObject *__pyx_n_s_ast;
static PyObject *__pyx_n_u_atRNA;
static PyObject *__pyx_n_u_atlncRNA;
static PyObject *__pyx_n_s_attr_format;
static PyObject *__pyx_n_s_attr_string;
static PyObject *__pyx_n_s_attributes;
static PyObject *__pyx_n_s_axis;
static PyObject *__pyx_n_u_bam;
static PyObject *__pyx_n_s_base;
static PyObject *__pyx_kp_u_bed;
static PyObject *__pyx_n_u_bed_2;
static PyObject *__pyx_n_s_bed_colors;
static PyObject *__pyx_n_s_bed_line;
static PyObject *__pyx_n_u_bidirectional_promoter_lncRNA;
static PyObject *__pyx_n_s_block_end;
static PyObject *__pyx_n_s_block_start;
static PyObject *__pyx_n_s_bookend_core_cython_utils__fasta;
static PyObject *__pyx_n_s_c;
static PyObject *__pyx_n_u_c;
static PyObject *__pyx_n_s_canonical;
static PyObject *__pyx_n_u_cap_bonus;
static PyObject *__pyx_n_s_capped;
static PyObject *__pyx_n_u_capped;
static PyObject *__pyx_n_u_child_key_gene;
static PyObject *__pyx_n_u_child_key_transcript;
static PyObject *__pyx_n_u_child_types;
static PyObject *__pyx_n_s_children;
static PyObject *__pyx_n_s_chrom;
static PyObject *__pyx_n_s_chrom_array;
static PyObject *__pyx_n_s_chrom_lengths;
static PyObject *__pyx_kp_u_chrom_source_strand_ranges_splic;
static PyObject *__pyx_n_s_cigartuples;
static PyObject *__pyx_n_s_class;
static PyObject *__pyx_n_s_clean_array;
static PyObject *__pyx_n_s_cline_in_traceback;
static PyObject *__pyx_n_s_close;
static PyObject *__pyx_n_s_collections;
static PyObject *__pyx_n_s_color;
static PyObject *__pyx_n_s_condense;
static PyObject *__pyx_n_s_condensed;
static PyObject *__pyx_n_s_confidence;
static PyObject *__pyx_n_u_confidence_threshold;
static PyObject *__pyx_n_s_config;
static PyObject *__pyx_n_s_config_defaults;
static PyObject *__pyx_n_s_config_dict;
static PyObject *__pyx_kp_s_contiguous_and_direct;
static PyObject *__pyx_kp_s_contiguous_and_indirect;
static PyObject *__pyx_n_s_copy;
static PyObject *__pyx_n_u_cov;
static PyObject *__pyx_n_u_coverage;
static PyObject *__pyx_n_s_covered_positions;
static PyObject *__pyx_n_s_current;
static PyObject *__pyx_n_s_current_cov;
static PyObject *__pyx_n_s_dataset;
static PyObject *__pyx_n_s_deepcopy;
static PyObject *__pyx_n_s_depth_matrix;
static PyObject *__pyx_n_s_dict;
static PyObject *__pyx_n_s_diff;
static PyObject *__pyx_n_s_dtype;
static PyObject *__pyx_n_s_dtype_is_object;
static PyObject *__pyx_n_s_dump_header;
static PyObject *__pyx_n_u_e;
static PyObject *__pyx_n_s_e_tag;
static PyObject *__pyx_n_u_e_tag;
static PyObject *__pyx_n_u_elr;
static PyObject *__pyx_kp_u_elr_gz;
static PyObject *__pyx_n_s_encode;
static PyObject *__pyx_n_s_end_extend;
static PyObject *__pyx_n_s_end_positions;
static PyObject *__pyx_n_u_end_seq;
static PyObject *__pyx_n_s_ends_clash;
static PyObject *__pyx_n_s_endswith;
static PyObject *__pyx_n_s_endweights;
static PyObject *__pyx_n_s_enumerate;
static PyObject *__pyx_n_s_error;
static PyObject *__pyx_n_s_error_rate;
static PyObject *__pyx_n_u_error_rate;
static PyObject *__pyx_n_u_errors;
static PyObject *__pyx_n_s_evaluate_splice_sites;
static PyObject *__pyx_n_s_exit;
static PyObject *__pyx_n_u_exon;
static PyObject *__pyx_n_s_file_type;
static PyObject *__pyx_n_s_fileconn;
static PyObject *__pyx_n_s_filename;
static PyObject *__pyx_n_s_flags;
static PyObject *__pyx_n_s_float32;
static PyObject *__pyx_n_s_format;
static PyObject *__pyx_n_s_fortran;
static PyObject *__pyx_n_u_fortran;
static PyObject *__pyx_n_s_fu;
static PyObject *__pyx_n_s_full;
static PyObject *__pyx_n_s_gaps;
static PyObject *__pyx_n_s_gaps_are_junctions;
static PyObject *__pyx_n_u_gene;
static PyObject *__pyx_n_u_gene_delim;
static PyObject *__pyx_n_u_gene_id;
static PyObject *__pyx_n_s_generate_loci;
static PyObject *__pyx_n_s_generate_read;
static PyObject *__pyx_n_s_generate_subchunks;
static PyObject *__pyx_n_s_genexpr;
static PyObject *__pyx_n_s_genome;
static PyObject *__pyx_n_s_genome_fasta;
static PyObject *__pyx_n_s_get;
static PyObject *__pyx_n_s_get_length;
static PyObject *__pyx_n_s_get_node_labels;
static PyObject *__pyx_n_s_get_reference_name;
static PyObject *__pyx_n_s_get_tag;
static PyObject *__pyx_n_s_get_transcript_fasta;
static PyObject *__pyx_n_s_getstate;
static PyObject *__pyx_n_u_gff;
static PyObject *__pyx_n_s_gff_config;
static PyObject *__pyx_n_s_gff_defaults;
static PyObject *__pyx_kp_s_got_differing_extents_in_dimensi;
static PyObject *__pyx_n_u_gtf;
static PyObject *__pyx_n_s_gtf_colorcode;
static PyObject *__pyx_n_s_gtf_config;
static PyObject *__pyx_n_s_gtf_defaults;
static PyObject *__pyx_n_u_guide_RNA;
static PyObject *__pyx_n_s_header;
static PyObject *__pyx_n_s_header_line;
static PyObject *__pyx_n_s_i;
static PyObject *__pyx_n_s_id;
static PyObject *__pyx_n_s_ignore;
static PyObject *__pyx_n_s_ignore_ends;
static PyObject *__pyx_n_u_ignore_ends;
static PyObject *__pyx_n_s_ignore_source;
static PyObject *__pyx_n_s_import;
static PyObject *__pyx_n_s_import_annotation;
static PyObject *__pyx_n_s_import_genome;
static PyObject *__pyx_n_s_init;
static PyObject *__pyx_n_s_init___locals_genexpr;
static PyObject *__pyx_n_s_input_data;
static PyObject *__pyx_n_s_input_lines;
static PyObject *__pyx_n_s_introns;
static PyObject *__pyx_n_s_is_compatible;
static PyObject *__pyx_n_s_is_digit;
static PyObject *__pyx_n_s_is_identical;
static PyObject *__pyx_n_s_is_malformed;
static PyObject *__pyx_n_s_is_paired;
static PyObject *__pyx_n_s_is_proper_pair;
static PyObject *__pyx_n_s_is_read1;
static PyObject *__pyx_n_s_is_read2;
static PyObject *__pyx_n_s_is_reverse;
static PyObject *__pyx_n_s_is_secondary;
static PyObject *__pyx_n_s_is_supplementary;
static PyObject *__pyx_n_s_is_unmapped;
static PyObject *__pyx_n_s_isdigit;
static PyObject *__pyx_n_s_items;
static PyObject *__pyx_n_s_itemsize;
static PyObject *__pyx_kp_s_itemsize_0_for_cython_array;
static PyObject *__pyx_n_s_j;
static PyObject *__pyx_n_s_junctions;
static PyObject *__pyx_n_s_k;
static PyObject *__pyx_n_s_keys;
static PyObject *__pyx_n_s_l;
static PyObject *__pyx_n_s_label_len;
static PyObject *__pyx_n_s_label_type;
static PyObject *__pyx_n_u_labels_are_trimmed;
static PyObject *__pyx_n_s_lasti;
static PyObject *__pyx_n_s_left;
static PyObject *__pyx_n_s_leftmost;
static PyObject *__pyx_n_u_lincRNA;
static PyObject *__pyx_n_s_line;
static PyObject *__pyx_n_s_list_of_reads;
static PyObject *__pyx_n_s_literal_eval;
static PyObject *__pyx_n_u_lncRNA;
static PyObject *__pyx_n_u_lnc_RNA;
static PyObject *__pyx_n_s_longEnd;
static PyObject *__pyx_n_s_longStart;
static PyObject *__pyx_n_s_lower;
static PyObject *__pyx_n_u_mRNA;
static PyObject *__pyx_n_u_mRNA_TE_gene;
static PyObject *__pyx_n_u_macro_lncRNA;
static PyObject *__pyx_n_s_main;
static PyObject *__pyx_n_s_make_sj_set;
static PyObject *__pyx_n_s_max;
static PyObject *__pyx_n_s_max_gap;
static PyObject *__pyx_n_u_max_headclip;
static PyObject *__pyx_n_s_max_intron;
static PyObject *__pyx_n_u_max_intron;
static PyObject *__pyx_n_s_maxgap;
static PyObject *__pyx_n_s_mdstring;
static PyObject *__pyx_n_s_memview;
static PyObject *__pyx_n_s_merge;
static PyObject *__pyx_n_s_merge_children;
static PyObject *__pyx_n_u_miRNA;
static PyObject *__pyx_n_u_min_reps;
static PyObject *__pyx_n_s_minimum_proportion;
static PyObject *__pyx_n_u_minlen_loose;
static PyObject *__pyx_n_u_minlen_strict;
static PyObject *__pyx_n_u_misc_RNA;
static PyObject *__pyx_n_u_mismatch_rate;
static PyObject *__pyx_n_s_mode;
static PyObject *__pyx_n_u_nM;
static PyObject *__pyx_n_s_name;
static PyObject *__pyx_n_s_name_2;
static PyObject *__pyx_n_s_name_attr;
static PyObject *__pyx_n_s_namedtuple;
static PyObject *__pyx_n_u_ncRNA;
static PyObject *__pyx_n_s_ndim;
static PyObject *__pyx_n_s_new;
static PyObject *__pyx_kp_s_no_default___reduce___due_to_non;
static PyObject *__pyx_n_u_non_stop_decay;
static PyObject *__pyx_n_u_nonsense_mediated_decay;
static PyObject *__pyx_n_u_nontranslating_CDS;
static PyObject *__pyx_n_s_np;
static PyObject *__pyx_n_s_nuc_to_int;
static PyObject *__pyx_n_s_numpy;
static PyObject *__pyx_kp_u_numpy_core_multiarray_failed_to;
static PyObject *__pyx_kp_u_numpy_core_umath_failed_to_impor;
static PyObject *__pyx_n_s_obj;
static PyObject *__pyx_n_s_object_dict;
static PyObject *__pyx_n_s_offset;
static PyObject *__pyx_n_s_old_chrom;
static PyObject *__pyx_n_s_old_l;
static PyObject *__pyx_n_s_old_r;
static PyObject *__pyx_n_s_oligo_match;
static PyObject *__pyx_n_s_open;
static PyObject *__pyx_n_s_other;
static PyObject *__pyx_n_u_otherRNA;
static PyObject *__pyx_kp_u_out_tab;
static PyObject *__pyx_n_s_outread;
static PyObject *__pyx_n_s_overlap_range;
static PyObject *__pyx_n_s_overlaps;
static PyObject *__pyx_n_s_pack;
static PyObject *__pyx_n_s_parent;
static PyObject *__pyx_n_u_parent_key_gene;
static PyObject *__pyx_n_u_parent_key_transcript;
static PyObject *__pyx_n_u_parent_types;
static PyObject *__pyx_n_s_parse_MD_string;
static PyObject *__pyx_n_s_parse_attributes;
static PyObject *__pyx_n_s_passed_positions;
static PyObject *__pyx_n_s_pickle;
static PyObject *__pyx_n_u_polymorphic_pseudogene;
static PyObject *__pyx_n_s_pop;
static PyObject *__pyx_n_s_pop_read;
static PyObject *__pyx_n_s_pos;
static PyObject *__pyx_n_s_position;
static PyObject *__pyx_n_u_pre_miRNA;
static PyObject *__pyx_n_u_primary_transcript;
static PyObject *__pyx_n_s_print;
static PyObject *__pyx_n_s_print_attributes;
static PyObject *__pyx_n_u_processed_pseudogene;
static PyObject *__pyx_n_u_processed_transcript;
static PyObject *__pyx_n_u_protein_coding;
static PyObject *__pyx_n_u_pseudogene;
static PyObject *__pyx_n_u_pseudogenic_exon;
static PyObject *__pyx_n_u_pseudogenic_transcript;
static PyObject *__pyx_n_s_pyx_PickleError;
static PyObject *__pyx_n_s_pyx_checksum;
static PyObject *__pyx_n_s_pyx_getbuffer;
static PyObject *__pyx_n_s_pyx_result;
static PyObject *__pyx_n_s_pyx_state;
static PyObject *__pyx_n_s_pyx_type;
static PyObject *__pyx_n_s_pyx_unpickle_AnnotationDataset;
static PyObject *__pyx_n_s_pyx_unpickle_AnnotationObject;
static PyObject *__pyx_n_s_pyx_unpickle_BAMobject;
static PyObject *__pyx_n_s_pyx_unpickle_Enum;
static PyObject *__pyx_n_s_pyx_unpickle_RNAseqDataset;
static PyObject *__pyx_n_s_pyx_unpickle_RNAseqMapping;
static PyObject *__pyx_n_s_pyx_vtable;
static PyObject *__pyx_n_s_quality_filter;
static PyObject *__pyx_n_u_quality_filter;
static PyObject *__pyx_n_s_query_name;
static PyObject *__pyx_n_s_query_sequence;
static PyObject *__pyx_n_s_r;
static PyObject *__pyx_n_u_r;
static PyObject *__pyx_n_u_rRNA;
static PyObject *__pyx_n_s_range;
static PyObject *__pyx_n_s_range_a;
static PyObject *__pyx_n_s_range_b;
static PyObject *__pyx_n_s_ranges;
static PyObject *__pyx_n_s_rc;
static PyObject *__pyx_n_s_read;
static PyObject *__pyx_n_s_read_format;
static PyObject *__pyx_n_s_read_generator;
static PyObject *__pyx_n_s_read_weight;
static PyObject *__pyx_n_s_readline;
static PyObject *__pyx_n_s_reads;
static PyObject *__pyx_n_s_record_artifacts;
static PyObject *__pyx_n_s_reduce;
static PyObject *__pyx_n_s_reduce_cython;
static PyObject *__pyx_n_s_reduce_ex;
static PyObject *__pyx_n_s_reference;
static PyObject *__pyx_n_u_reference;
static PyObject *__pyx_n_s_reference_id;
static PyObject *__pyx_n_s_reference_name;
static PyObject *__pyx_n_s_reference_start;
static PyObject *__pyx_n_u_remove_gapped_termini;
static PyObject *__pyx_n_u_remove_noncanonical;
static PyObject *__pyx_n_s_remove_terminal_gaps;
static PyObject *__pyx_n_s_replace;
static PyObject *__pyx_n_s_require_cap;
static PyObject *__pyx_n_u_retained_intron;
static PyObject *__pyx_n_u_reverse;
static PyObject *__pyx_n_u_ribozyme;
static PyObject *__pyx_n_s_right;
static PyObject *__pyx_n_s_rightmost;
static PyObject *__pyx_n_s_rnaseq_utils;
static PyObject *__pyx_kp_s_rnaseq_utils_pyx;
static PyObject *__pyx_n_s_round;
static PyObject *__pyx_n_s_rstrip;
static PyObject *__pyx_n_u_s;
static PyObject *__pyx_n_u_sRNA;
static PyObject *__pyx_n_s_s_tag;
static PyObject *__pyx_n_u_s_tag;
static PyObject *__pyx_n_u_sam;
static PyObject *__pyx_n_u_scRNA;
static PyObject *__pyx_n_u_scaRNA;
static PyObject *__pyx_n_s_score_column;
static PyObject *__pyx_n_u_secondary;
static PyObject *__pyx_n_s_send;
static PyObject *__pyx_n_u_sense_intronic;
static PyObject *__pyx_n_s_sense_match;
static PyObject *__pyx_n_u_sense_overlapping;
static PyObject *__pyx_n_s_seqtype;
static PyObject *__pyx_n_s_setstate;
static PyObject *__pyx_n_s_setstate_cython;
static PyObject *__pyx_n_s_shape;
static PyObject *__pyx_n_s_shared_bases;
static PyObject *__pyx_n_s_size;
static PyObject *__pyx_n_u_sj;
static PyObject *__pyx_n_u_sj_shift;
static PyObject *__pyx_n_u_snRNA;
static PyObject *__pyx_n_u_snoRNA;
static PyObject *__pyx_n_s_sort;
static PyObject *__pyx_n_s_source;
static PyObject *__pyx_n_u_source;
static PyObject *__pyx_n_s_source_array;
static PyObject *__pyx_n_s_source_string;
static PyObject *__pyx_n_s_sp;
static PyObject *__pyx_n_s_span;
static PyObject *__pyx_n_s_span_length;
static PyObject *__pyx_n_s_span_start;
static PyObject *__pyx_n_s_span_weight;
static PyObject *__pyx_n_s_splice;
static PyObject *__pyx_n_s_splice_match;
static PyObject *__pyx_n_s_split;
static PyObject *__pyx_n_s_split_positions;
static PyObject *__pyx_n_s_start;
static PyObject *__pyx_n_u_start_seq;
static PyObject *__pyx_n_s_step;
static PyObject *__pyx_n_s_stop;
static PyObject *__pyx_n_s_strand;
static PyObject *__pyx_n_u_stranded;
static PyObject *__pyx_kp_s_strided_and_direct;
static PyObject *__pyx_kp_s_strided_and_direct_or_indirect;
static PyObject *__pyx_kp_s_strided_and_indirect;
static PyObject *__pyx_kp_s_stringsource;
static PyObject *__pyx_n_s_strip;
static PyObject *__pyx_n_s_struct;
static PyObject *__pyx_n_s_sum;
static PyObject *__pyx_n_s_sys;
static PyObject *__pyx_n_u_tRNA;
static PyObject *__pyx_n_u_telomerase_RNA;
static PyObject *__pyx_n_s_test;
static PyObject *__pyx_n_s_threshold;
static PyObject *__pyx_n_s_throw;
static PyObject *__pyx_n_u_transcribed_processed_pseudogene;
static PyObject *__pyx_n_u_transcribed_unitary_pseudogene;
static PyObject *__pyx_n_u_transcribed_unprocessed_pseudoge;
static PyObject *__pyx_n_u_transcript;
static PyObject *__pyx_n_s_transcript_id;
static PyObject *__pyx_n_u_transcript_id;
static PyObject *__pyx_n_u_translated_processed_pseudogene;
static PyObject *__pyx_n_u_translated_unprocessed_pseudogen;
static PyObject *__pyx_n_u_ts;
static PyObject *__pyx_kp_s_unable_to_allocate_array_data;
static PyObject *__pyx_kp_s_unable_to_allocate_shape_and_str;
static PyObject *__pyx_n_u_unitary_pseudogene;
static PyObject *__pyx_n_s_unpack;
static PyObject *__pyx_n_u_unprocessed_pseudogene;
static PyObject *__pyx_n_s_update;
static PyObject *__pyx_n_s_upper;
static PyObject *__pyx_n_s_use_attributes;
static PyObject *__pyx_n_s_values;
static PyObject *__pyx_n_u_verbose;
static PyObject *__pyx_n_s_was_digit;
static PyObject *__pyx_n_s_weight;
static PyObject *__pyx_n_u_weight;
static PyObject *__pyx_n_s_where;
static PyObject *__pyx_n_s_write_as_bed;
static PyObject *__pyx_n_s_write_as_elr;
static PyObject *__pyx_n_s_write_as_gtf;
static PyObject *__pyx_n_u_x;
static PyObject *__pyx_n_s_zeros;
static PyObject *__pyx_n_s_zip;
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_8__init___genexpr(PyObject *__pyx_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping___init__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_input_data, PyObject *__pyx_v_attributes); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_2__eq__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_4__gt__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_6__ge__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_8__lt__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_10__le__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_12__ne__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_14__repr__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static Py_ssize_t __pyx_pf_13_rnaseq_utils_13RNAseqMapping_16__len__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_18left(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_20right(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_22get_length(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_24gaps(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_26junctions(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_28diff(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_30overlaps(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_32overlap_range(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_34shared_bases(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_36is_malformed(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_38ends_clash(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_40splice_match(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_v_ignore_ends); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_42antisense_match(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_v_end_extend); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_44sense_match(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_v_end_extend); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_46is_compatible(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other, int __pyx_v_ignore_ends, int __pyx_v_ignore_source); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_48is_identical(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_50merge(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_52get_node_labels(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, int __pyx_v_record_artifacts, int __pyx_v_condense); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_54write_as_elr(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, int __pyx_v_as_string, int __pyx_v_record_artifacts, int __pyx_v_condense, int __pyx_v_endweights); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_56write_as_bed(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_chrom_array, PyObject *__pyx_v_source_array, PyObject *__pyx_v_as_string, PyObject *__pyx_v_score_column, PyObject *__pyx_v_record_artifacts, PyObject *__pyx_v_name_attr, PyObject *__pyx_v_color, PyObject *__pyx_v_condense, PyObject *__pyx_v_longStart, PyObject *__pyx_v_longEnd); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_58write_as_gtf(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_chrom_array, PyObject *__pyx_v_source); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_60print_attributes(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_format, PyObject *__pyx_v_full); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_5chrom___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_5chrom_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_6source___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_6source_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_6strand___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_6strand_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_5s_len___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_5s_len_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_5e_len___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_5e_len_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_6ranges___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_6ranges_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_6ranges_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_6splice___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_6splice_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_6splice_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_5s_tag___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_5s_tag_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_5e_tag___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_5e_tag_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_6capped___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_6capped_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_8complete___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_8complete_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_12is_reference___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_12is_reference_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_9condensed___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_9condensed_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_10attributes___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_10attributes_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_10attributes_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_4span___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_4span_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_6weight___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_6weight_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_8coverage___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_8coverage_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_12tripleweight___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqMapping_12tripleweight_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_62__reduce_cython__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqMapping_64__setstate_cython__(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset___init__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_chrom_array, PyObject *__pyx_v_source_array, PyObject *__pyx_v_chrom_lengths, PyObject *__pyx_v_genome_fasta, PyObject *__pyx_v_config, PyObject *__pyx_v_gtf_config, PyObject *__pyx_v_gff_config); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_2make_sj_set(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_sj_file); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_4add_source(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_source_string); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_6add_chrom(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_chrom_string); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_8add_read_from_BED(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_bed_line, PyObject *__pyx_v_source_string, PyObject *__pyx_v_s_tag, PyObject *__pyx_v_e_tag, PyObject *__pyx_v_capped, PyObject *__pyx_v_gaps_are_junctions); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_10add_read(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_input_data); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_12add_read_from_ELR(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_elr_line); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_14add_read_from_BAM(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_bam_lines); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_16pop_read(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_read_format, PyObject *__pyx_v_as_string); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_18dump_header(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_20import_annotation(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_filename, PyObject *__pyx_v_name); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_22add_mapping_object(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_parent, PyObject *__pyx_v_children, PyObject *__pyx_v_name, int __pyx_v_source, PyObject *__pyx_v_object_dict); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_24anno_to_mapping_object(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_parent, PyObject *__pyx_v_children, int __pyx_v_source); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_9read_list___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_9read_list_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_9read_list_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_11chrom_array___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_11chrom_array_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_11chrom_array_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_12source_array___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_12source_array_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_12source_array_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_13chrom_lengths___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_13chrom_lengths_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_13chrom_lengths_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_11chrom_index___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_11chrom_index_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_12source_index___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_12source_index_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_8sj_shift___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_8sj_shift_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_12max_headclip___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_12max_headclip_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_10max_intron___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_10max_intron_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_10chrom_dict___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_10chrom_dict_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_10chrom_dict_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_11source_dict___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_11source_dict_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_11source_dict_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_14reference_dict___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_14reference_dict_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_14reference_dict_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_10gtf_config___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_10gtf_config_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_10gtf_config_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_10gff_config___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_10gff_config_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_10gff_config_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_6config___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_6genome___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_11label_tally___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_5s_tag___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_5e_tag___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_6capped___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_8stranded___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_7reverse___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_11ignore_ends___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_19remove_noncanonical___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_18labels_are_trimmed___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_14quality_filter___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_7verbose___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_9secondary___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_10has_genome___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_21remove_gapped_termini___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_9start_seq___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_7end_seq___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_12start_seq_rc___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_10end_seq_rc___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_10gene_delim___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_6minlen___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_13minlen_strict___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_12minlen_loose___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_13mismatch_rate___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_10error_rate___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_11start_array___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_9end_array___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_6sj_set___get__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_6sj_set_2__set__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_13RNAseqDataset_6sj_set_4__del__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_26__reduce_cython__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13RNAseqDataset_28__setstate_cython__(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject___init__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_anno_string, PyObject *__pyx_v_format, PyObject *__pyx_v_config_dict); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_2parse_attributes(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_attr_string, PyObject *__pyx_v_attr_format); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_4__eq__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_6__ne__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_8__gt__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_10__ge__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_12__lt__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_14__le__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_10attributes___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_10attributes_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_10attributes_4__del__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_4keep___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_4keep_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_6parent___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_6parent_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_6format___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_6format_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_6format_4__del__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_7gene_id___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_7gene_id_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_7gene_id_4__del__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_13transcript_id___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_13transcript_id_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_13transcript_id_4__del__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_5chrom___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_5chrom_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_5chrom_4__del__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_6source___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_6source_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_6source_4__del__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_9anno_type___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_9anno_type_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_9anno_type_4__del__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_6strand___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_6strand_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_4span___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_4span_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_6fields___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_6fields_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_16AnnotationObject_6fields_4__del__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_16__reduce_cython__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_16AnnotationObject_18__setstate_cython__(struct __pyx_obj_13_rnaseq_utils_AnnotationObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_pf_13_rnaseq_utils_17AnnotationDataset___init__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, PyObject *__pyx_v_annotation_files, PyObject *__pyx_v_reference, PyObject *__pyx_v_genome_fasta, PyObject *__pyx_v_config, PyObject *__pyx_v_gtf_config, PyObject *__pyx_v_gff_config, PyObject *__pyx_v_confidence); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_2get_transcript_fasta(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqMapping *__pyx_v_transcript); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_4merge_children(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, PyObject *__pyx_v_children); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_6generate_loci(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_11annotations___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_17AnnotationDataset_11annotations_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_17AnnotationDataset_11annotations_4__del__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_9generator___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_17AnnotationDataset_9generator_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_13_rnaseq_utils_17AnnotationDataset_9generator_4__del__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_20number_of_assemblies___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_17AnnotationDataset_20number_of_assemblies_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_7counter___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_17AnnotationDataset_7counter_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_8min_reps___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_17AnnotationDataset_8min_reps_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_10confidence___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_17AnnotationDataset_10confidence_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_9cap_bonus___get__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self); /* proto */
static int __pyx_pf_13_rnaseq_utils_17AnnotationDataset_9cap_bonus_2__set__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_9__reduce_cython__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17AnnotationDataset_11__setstate_cython__(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_array_to_blocks(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_arr); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_3overlap_type(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_range_a, PyObject *__pyx_v_range_b); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_5flatten(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_list_of_lists); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_7collapse_blocks(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_list_of_doubles); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9get_sources(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_list_of_reads); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_11get_source_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_list_of_sources); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_13build_depth_matrix(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_leftmost, int __pyx_v_rightmost, PyObject *__pyx_v_reads, int __pyx_v_use_attributes, int __pyx_v_splice); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_15bedgraph(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_chrom, int __pyx_v_leftmost, PyArrayObject *__pyx_v_depth_matrix, PyObject *__pyx_v_seqtype, int __pyx_v_strand); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_17elr_to_readobject(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_elr_line); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_19range_of_reads(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_reads); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_21calculate_coverage(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_reads, int __pyx_v_left, int __pyx_v_right); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_23get_flank(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_genome, PyObject *__pyx_v_chrom, int __pyx_v_pos, int __pyx_v_strand, PyObject *__pyx_v_label_type, int __pyx_v_label_len); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_25parse_MD_string(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_mdstring); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_28parse_SAM_CIGAR(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_pos, PyObject *__pyx_v_cigartuples, PyObject *__pyx_v_mdstring, float __pyx_v_error_rate, int __pyx_v_quality_filter); /* proto */
static int __pyx_pf_13_rnaseq_utils_9BAMobject___init__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_dataset, PyObject *__pyx_v_input_lines); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_2generate_read(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_4remove_terminal_gaps(CYTHON_UNUSED struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v_ranges, PyObject *__pyx_v_canonical); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_6evaluate_splice_sites(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v_chrom, PyObject *__pyx_v_strand, PyObject *__pyx_v_introns); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_8adjust_splice_sites(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v_strand, PyObject *__pyx_v_ranges, PyObject *__pyx_v_canonical, PyObject *__pyx_v_chrom); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_7dataset___get__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_11input_lines___get__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_10error_rate___get__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_11ignore_ends___get__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_9secondary___get__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_19remove_noncanonical___get__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_21remove_gapped_termini___get__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_14quality_filter___get__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_12max_headclip___get__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_8sj_shift___get__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_10max_intron___get__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_10__reduce_cython__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_9BAMobject_12__setstate_cython__(struct __pyx_obj_13_rnaseq_utils_BAMobject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_30read_generator(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_fileconn, struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *__pyx_v_dataset, PyObject *__pyx_v_file_type, int __pyx_v_max_gap, float __pyx_v_minimum_proportion, int __pyx_v_max_intron); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_33generate_subchunks(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_list_of_reads, PyObject *__pyx_v_split_positions); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_36get_max_deltas(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_array, float __pyx_v_offset); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_38has_ends(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_list_of_reads, int __pyx_v_require_cap); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_40get_gaps(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_array, int __pyx_v_maxgap, PyObject *__pyx_v_threshold); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_42__pyx_unpickle_RNAseqMapping(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_44__pyx_unpickle_RNAseqDataset(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_46__pyx_unpickle_AnnotationObject(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_48__pyx_unpickle_AnnotationDataset(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_pf_13_rnaseq_utils_50__pyx_unpickle_BAMobject(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_pf_7cpython_5array_5array___getbuffer__(arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info, CYTHON_UNUSED int __pyx_v_flags); /* proto */
static void __pyx_pf_7cpython_5array_5array_2__releasebuffer__(CYTHON_UNUSED arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */
static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array___cinit__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, PyObject *__pyx_v_format, PyObject *__pyx_v_mode, int __pyx_v_allocate_buffer); /* proto */
static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_2__getbuffer__(struct __pyx_array_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
static void __pyx_array___pyx_pf_15View_dot_MemoryView_5array_4__dealloc__(struct __pyx_array_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_5array_7memview___get__(struct __pyx_array_obj *__pyx_v_self); /* proto */
static Py_ssize_t __pyx_array___pyx_pf_15View_dot_MemoryView_5array_6__len__(struct __pyx_array_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_8__getattr__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_attr); /* proto */
static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_10__getitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item); /* proto */
static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_12__setitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf___pyx_array___reduce_cython__(CYTHON_UNUSED struct __pyx_array_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_array_2__setstate_cython__(CYTHON_UNUSED struct __pyx_array_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum___init__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v_name); /* proto */
static PyObject *__pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum_2__repr__(struct __pyx_MemviewEnum_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_MemviewEnum___reduce_cython__(struct __pyx_MemviewEnum_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_MemviewEnum_2__setstate_cython__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj, int __pyx_v_flags, int __pyx_v_dtype_is_object); /* proto */
static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_4__getitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto */
static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_6__setitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto */
static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbuffer__(struct __pyx_memoryview_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_1T___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4base___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_5shape___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_7strides___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_10suboffsets___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4ndim___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_8itemsize___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_6nbytes___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4size___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static Py_ssize_t __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_10__len__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_12__repr__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_14__str__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_20copy(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_22copy_fortran(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_memoryview___reduce_cython__(CYTHON_UNUSED struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_memoryview_2__setstate_cython__(CYTHON_UNUSED struct __pyx_memoryview_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static void __pyx_memoryviewslice___pyx_pf_15View_dot_MemoryView_16_memoryviewslice___dealloc__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_memoryviewslice___reduce_cython__(CYTHON_UNUSED struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_memoryviewslice_2__setstate_cython__(CYTHON_UNUSED struct __pyx_memoryviewslice_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView___pyx_unpickle_Enum(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_tp_new_13_rnaseq_utils_RNAseqMapping(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_13_rnaseq_utils_RNAseqDataset(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_13_rnaseq_utils_AnnotationObject(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_13_rnaseq_utils_AnnotationDataset(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_13_rnaseq_utils_BAMobject(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct____init__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
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static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_2_generate_loci(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_3_array_to_blocks(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_5_read_generator(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
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static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
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      }
      __pyx_t_10 = (__pyx_v_s_tag != 0);
      if (__pyx_t_10) {
      } else {
        __pyx_t_2 = __pyx_t_10;
        goto __pyx_L45_bool_binop_done;
      }
      __pyx_t_10 = (0 <= __pyx_v_tail);
      if (__pyx_t_10) {
        __pyx_t_10 = (__pyx_v_tail < 5);
      }
      __pyx_t_1 = (__pyx_t_10 != 0);
      __pyx_t_2 = __pyx_t_1;
      __pyx_L45_bool_binop_done:;
      __pyx_v_s_tag = __pyx_t_2;

      /* "_rnaseq_utils.pyx":2205
 *             elif (start_minus or end_minus) and not (start_plus or end_plus):
 *                 s_tag = start_minus or (s_tag and 0 <= tail < 5)
 *                 e_tag = end_minus or (e_tag and head == 0)             # <<<<<<<<<<<<<<
 *                 capped = capped_minus
 *                 strand = -1
 */
      __pyx_t_1 = (__pyx_v_end_minus != 0);
      if (!__pyx_t_1) {
      } else {
        __pyx_t_2 = __pyx_t_1;
        goto __pyx_L48_bool_binop_done;
      }
      __pyx_t_1 = (__pyx_v_e_tag != 0);
      if (__pyx_t_1) {
      } else {
        __pyx_t_2 = __pyx_t_1;
        goto __pyx_L48_bool_binop_done;
      }
      __pyx_t_1 = ((__pyx_v_head == 0) != 0);
      __pyx_t_2 = __pyx_t_1;
      __pyx_L48_bool_binop_done:;
      __pyx_v_e_tag = __pyx_t_2;

      /* "_rnaseq_utils.pyx":2206
 *                 s_tag = start_minus or (s_tag and 0 <= tail < 5)
 *                 e_tag = end_minus or (e_tag and head == 0)
 *                 capped = capped_minus             # <<<<<<<<<<<<<<
 *                 strand = -1
 *             else: # softclipping is inconsistent
 */
      __pyx_v_capped = __pyx_v_capped_minus;

      /* "_rnaseq_utils.pyx":2207
 *                 e_tag = end_minus or (e_tag and head == 0)
 *                 capped = capped_minus
 *                 strand = -1             # <<<<<<<<<<<<<<
 *             else: # softclipping is inconsistent
 *                 if start_plus and end_plus: # both tags agree, override strand
 */
      __pyx_v_strand = -1;

      /* "_rnaseq_utils.pyx":2203
 *                 capped = capped_plus
 *                 strand = 1
 *             elif (start_minus or end_minus) and not (start_plus or end_plus):             # <<<<<<<<<<<<<<
 *                 s_tag = start_minus or (s_tag and 0 <= tail < 5)
 *                 e_tag = end_minus or (e_tag and head == 0)
 */
      goto __pyx_L28;
    }

    /* "_rnaseq_utils.pyx":2209
 *                 strand = -1
 *             else: # softclipping is inconsistent
 *                 if start_plus and end_plus: # both tags agree, override strand             # <<<<<<<<<<<<<<
 *                     strand = 1
 *                     s_tag, e_tag, capped = start_plus, end_plus, capped_plus
 */
    /*else*/ {
      __pyx_t_1 = (__pyx_v_start_plus != 0);
      if (__pyx_t_1) {
      } else {
        __pyx_t_2 = __pyx_t_1;
        goto __pyx_L52_bool_binop_done;
      }
      __pyx_t_1 = (__pyx_v_end_plus != 0);
      __pyx_t_2 = __pyx_t_1;
      __pyx_L52_bool_binop_done:;
      if (__pyx_t_2) {

        /* "_rnaseq_utils.pyx":2210
 *             else: # softclipping is inconsistent
 *                 if start_plus and end_plus: # both tags agree, override strand
 *                     strand = 1             # <<<<<<<<<<<<<<
 *                     s_tag, e_tag, capped = start_plus, end_plus, capped_plus
 * 
 */
        __pyx_v_strand = 1;

        /* "_rnaseq_utils.pyx":2211
 *                 if start_plus and end_plus: # both tags agree, override strand
 *                     strand = 1
 *                     s_tag, e_tag, capped = start_plus, end_plus, capped_plus             # <<<<<<<<<<<<<<
 * 
 *                 if start_minus and end_minus: # both tags agree, override strand
 */
        __pyx_t_2 = __pyx_v_start_plus;
        __pyx_t_1 = __pyx_v_end_plus;
        __pyx_t_10 = __pyx_v_capped_plus;
        __pyx_v_s_tag = __pyx_t_2;
        __pyx_v_e_tag = __pyx_t_1;
        __pyx_v_capped = __pyx_t_10;

        /* "_rnaseq_utils.pyx":2209
 *                 strand = -1
 *             else: # softclipping is inconsistent
 *                 if start_plus and end_plus: # both tags agree, override strand             # <<<<<<<<<<<<<<
 *                     strand = 1
 *                     s_tag, e_tag, capped = start_plus, end_plus, capped_plus
 */
      }

      /* "_rnaseq_utils.pyx":2213
 *                     s_tag, e_tag, capped = start_plus, end_plus, capped_plus
 * 
 *                 if start_minus and end_minus: # both tags agree, override strand             # <<<<<<<<<<<<<<
 *                     strand = -1
 *                     s_tag, e_tag, capped = start_minus, end_minus, capped_minus
 */
      __pyx_t_1 = (__pyx_v_start_minus != 0);
      if (__pyx_t_1) {
      } else {
        __pyx_t_10 = __pyx_t_1;
        goto __pyx_L55_bool_binop_done;
      }
      __pyx_t_1 = (__pyx_v_end_minus != 0);
      __pyx_t_10 = __pyx_t_1;
      __pyx_L55_bool_binop_done:;
      if (__pyx_t_10) {

        /* "_rnaseq_utils.pyx":2214
 * 
 *                 if start_minus and end_minus: # both tags agree, override strand
 *                     strand = -1             # <<<<<<<<<<<<<<
 *                     s_tag, e_tag, capped = start_minus, end_minus, capped_minus
 * 
 */
        __pyx_v_strand = -1;

        /* "_rnaseq_utils.pyx":2215
 *                 if start_minus and end_minus: # both tags agree, override strand
 *                     strand = -1
 *                     s_tag, e_tag, capped = start_minus, end_minus, capped_minus             # <<<<<<<<<<<<<<
 * 
 *                 # default strand wins
 */
        __pyx_t_10 = __pyx_v_start_minus;
        __pyx_t_1 = __pyx_v_end_minus;
        __pyx_t_2 = __pyx_v_capped_minus;
        __pyx_v_s_tag = __pyx_t_10;
        __pyx_v_e_tag = __pyx_t_1;
        __pyx_v_capped = __pyx_t_2;

        /* "_rnaseq_utils.pyx":2213
 *                     s_tag, e_tag, capped = start_plus, end_plus, capped_plus
 * 
 *                 if start_minus and end_minus: # both tags agree, override strand             # <<<<<<<<<<<<<<
 *                     strand = -1
 *                     s_tag, e_tag, capped = start_minus, end_minus, capped_minus
 */
      }

      /* "_rnaseq_utils.pyx":2218
 * 
 *                 # default strand wins
 *                 if strand == 1:             # <<<<<<<<<<<<<<
 *                     s_tag = start_plus or (s_tag and 0 < head < 5)
 *                     e_tag = end_plus or (e_tag and tail == 0)
 */
      switch (__pyx_v_strand) {
        case 1:

        /* "_rnaseq_utils.pyx":2219
 *                 # default strand wins
 *                 if strand == 1:
 *                     s_tag = start_plus or (s_tag and 0 < head < 5)             # <<<<<<<<<<<<<<
 *                     e_tag = end_plus or (e_tag and tail == 0)
 *                     capped = capped_plus
 */
        __pyx_t_1 = (__pyx_v_start_plus != 0);
        if (!__pyx_t_1) {
        } else {
          __pyx_t_2 = __pyx_t_1;
          goto __pyx_L57_bool_binop_done;
        }
        __pyx_t_1 = (__pyx_v_s_tag != 0);
        if (__pyx_t_1) {
        } else {
          __pyx_t_2 = __pyx_t_1;
          goto __pyx_L57_bool_binop_done;
        }
        __pyx_t_1 = (0 < __pyx_v_head);
        if (__pyx_t_1) {
          __pyx_t_1 = (__pyx_v_head < 5);
        }
        __pyx_t_10 = (__pyx_t_1 != 0);
        __pyx_t_2 = __pyx_t_10;
        __pyx_L57_bool_binop_done:;
        __pyx_v_s_tag = __pyx_t_2;

        /* "_rnaseq_utils.pyx":2220
 *                 if strand == 1:
 *                     s_tag = start_plus or (s_tag and 0 < head < 5)
 *                     e_tag = end_plus or (e_tag and tail == 0)             # <<<<<<<<<<<<<<
 *                     capped = capped_plus
 *                 elif strand == -1:
 */
        __pyx_t_10 = (__pyx_v_end_plus != 0);
        if (!__pyx_t_10) {
        } else {
          __pyx_t_2 = __pyx_t_10;
          goto __pyx_L60_bool_binop_done;
        }
        __pyx_t_10 = (__pyx_v_e_tag != 0);
        if (__pyx_t_10) {
        } else {
          __pyx_t_2 = __pyx_t_10;
          goto __pyx_L60_bool_binop_done;
        }
        __pyx_t_10 = ((__pyx_v_tail == 0) != 0);
        __pyx_t_2 = __pyx_t_10;
        __pyx_L60_bool_binop_done:;
        __pyx_v_e_tag = __pyx_t_2;

        /* "_rnaseq_utils.pyx":2221
 *                     s_tag = start_plus or (s_tag and 0 < head < 5)
 *                     e_tag = end_plus or (e_tag and tail == 0)
 *                     capped = capped_plus             # <<<<<<<<<<<<<<
 *                 elif strand == -1:
 *                     s_tag = start_minus or (s_tag and 0 < tail < 5)
 */
        __pyx_v_capped = __pyx_v_capped_plus;

        /* "_rnaseq_utils.pyx":2218
 * 
 *                 # default strand wins
 *                 if strand == 1:             # <<<<<<<<<<<<<<
 *                     s_tag = start_plus or (s_tag and 0 < head < 5)
 *                     e_tag = end_plus or (e_tag and tail == 0)
 */
        break;
        case -1L:

        /* "_rnaseq_utils.pyx":2223
 *                     capped = capped_plus
 *                 elif strand == -1:
 *                     s_tag = start_minus or (s_tag and 0 < tail < 5)             # <<<<<<<<<<<<<<
 *                     e_tag = end_minus or (e_tag and head == 0)
 *                     capped = capped_minus
 */
        __pyx_t_10 = (__pyx_v_start_minus != 0);
        if (!__pyx_t_10) {
        } else {
          __pyx_t_2 = __pyx_t_10;
          goto __pyx_L63_bool_binop_done;
        }
        __pyx_t_10 = (__pyx_v_s_tag != 0);
        if (__pyx_t_10) {
        } else {
          __pyx_t_2 = __pyx_t_10;
          goto __pyx_L63_bool_binop_done;
        }
        __pyx_t_10 = (0 < __pyx_v_tail);
        if (__pyx_t_10) {
          __pyx_t_10 = (__pyx_v_tail < 5);
        }
        __pyx_t_1 = (__pyx_t_10 != 0);
        __pyx_t_2 = __pyx_t_1;
        __pyx_L63_bool_binop_done:;
        __pyx_v_s_tag = __pyx_t_2;

        /* "_rnaseq_utils.pyx":2224
 *                 elif strand == -1:
 *                     s_tag = start_minus or (s_tag and 0 < tail < 5)
 *                     e_tag = end_minus or (e_tag and head == 0)             # <<<<<<<<<<<<<<
 *                     capped = capped_minus
 * 
 */
        __pyx_t_1 = (__pyx_v_end_minus != 0);
        if (!__pyx_t_1) {
        } else {
          __pyx_t_2 = __pyx_t_1;
          goto __pyx_L66_bool_binop_done;
        }
        __pyx_t_1 = (__pyx_v_e_tag != 0);
        if (__pyx_t_1) {
        } else {
          __pyx_t_2 = __pyx_t_1;
          goto __pyx_L66_bool_binop_done;
        }
        __pyx_t_1 = ((__pyx_v_head == 0) != 0);
        __pyx_t_2 = __pyx_t_1;
        __pyx_L66_bool_binop_done:;
        __pyx_v_e_tag = __pyx_t_2;

        /* "_rnaseq_utils.pyx":2225
 *                     s_tag = start_minus or (s_tag and 0 < tail < 5)
 *                     e_tag = end_minus or (e_tag and head == 0)
 *                     capped = capped_minus             # <<<<<<<<<<<<<<
 * 
 *         # Perform artifact masking against genome sequence
 */
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        /* "_rnaseq_utils.pyx":2222
 *                     e_tag = end_plus or (e_tag and tail == 0)
 *                     capped = capped_plus
 *                 elif strand == -1:             # <<<<<<<<<<<<<<
 *                     s_tag = start_minus or (s_tag and 0 < tail < 5)
 *                     e_tag = end_minus or (e_tag and head == 0)
 */
        break;
        default: break;
      }
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    __pyx_L28:;
  }
  __pyx_L3:;

  /* "_rnaseq_utils.pyx":2228
 * 
 *         # Perform artifact masking against genome sequence
 *         left_pos = ranges[0][0]             # <<<<<<<<<<<<<<
 *         right_pos = ranges[-1][1]-1
 *         if self.dataset.has_genome:
 */
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    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(0, 2228, __pyx_L1_error)
  }
  __pyx_t_6 = __Pyx_GetItemInt_List(__pyx_v_ranges, 0, long, 1, __Pyx_PyInt_From_long, 1, 0, 1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 2228, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_8 = __Pyx_GetItemInt(__pyx_t_6, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 2228, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_8);
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_3 = __Pyx_PyInt_As_int(__pyx_t_8); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 2228, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
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  /* "_rnaseq_utils.pyx":2229
 *         # Perform artifact masking against genome sequence
 *         left_pos = ranges[0][0]
 *         right_pos = ranges[-1][1]-1             # <<<<<<<<<<<<<<
 *         if self.dataset.has_genome:
 *             if strand == 1:
 */
  if (unlikely(__pyx_v_ranges == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(0, 2229, __pyx_L1_error)
  }
  __pyx_t_8 = __Pyx_GetItemInt_List(__pyx_v_ranges, -1L, long, 1, __Pyx_PyInt_From_long, 1, 1, 1); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 2229, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_8);
  __pyx_t_6 = __Pyx_GetItemInt(__pyx_t_8, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 2229, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
  __pyx_t_8 = __Pyx_PyInt_SubtractObjC(__pyx_t_6, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 2229, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_8);
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_3 = __Pyx_PyInt_As_int(__pyx_t_8); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 2229, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
  __pyx_v_right_pos = __pyx_t_3;

  /* "_rnaseq_utils.pyx":2230
 *         left_pos = ranges[0][0]
 *         right_pos = ranges[-1][1]-1
 *         if self.dataset.has_genome:             # <<<<<<<<<<<<<<
 *             if strand == 1:
 *                 if s_tag:
 */
  __pyx_t_2 = (__pyx_v_self->dataset->has_genome != 0);
  if (__pyx_t_2) {

    /* "_rnaseq_utils.pyx":2231
 *         right_pos = ranges[-1][1]-1
 *         if self.dataset.has_genome:
 *             if strand == 1:             # <<<<<<<<<<<<<<
 *                 if s_tag:
 *                     s_tag = not self.matches_masking_sequence(chrom, left_pos, strand, 'S', min(max(5,head), len(self.dataset.start_seq)))
 */
    switch (__pyx_v_strand) {
      case 1:

      /* "_rnaseq_utils.pyx":2232
 *         if self.dataset.has_genome:
 *             if strand == 1:
 *                 if s_tag:             # <<<<<<<<<<<<<<
 *                     s_tag = not self.matches_masking_sequence(chrom, left_pos, strand, 'S', min(max(5,head), len(self.dataset.start_seq)))
 *                     capped = capped and s_tag
 */
      __pyx_t_2 = (__pyx_v_s_tag != 0);
      if (__pyx_t_2) {

        /* "_rnaseq_utils.pyx":2233
 *             if strand == 1:
 *                 if s_tag:
 *                     s_tag = not self.matches_masking_sequence(chrom, left_pos, strand, 'S', min(max(5,head), len(self.dataset.start_seq)))             # <<<<<<<<<<<<<<
 *                     capped = capped and s_tag
 *                 if e_tag:
 */
        __pyx_t_8 = __pyx_v_self->dataset->start_seq;
        __Pyx_INCREF(__pyx_t_8);
        if (unlikely(__pyx_t_8 == Py_None)) {
          PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
          __PYX_ERR(0, 2233, __pyx_L1_error)
        }
        __pyx_t_7 = __Pyx_PyUnicode_GET_LENGTH(__pyx_t_8); if (unlikely(__pyx_t_7 == ((Py_ssize_t)-1))) __PYX_ERR(0, 2233, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        __pyx_t_3 = __pyx_v_head;
        __pyx_t_5 = 5;
        if (((__pyx_t_3 > __pyx_t_5) != 0)) {
          __pyx_t_4 = __pyx_t_3;
        } else {
          __pyx_t_4 = __pyx_t_5;
        }
        __pyx_t_5 = __pyx_t_4;
        if (((__pyx_t_7 < __pyx_t_5) != 0)) {
          __pyx_t_11 = __pyx_t_7;
        } else {
          __pyx_t_11 = __pyx_t_5;
        }
        __pyx_v_s_tag = (!(((struct __pyx_vtabstruct_13_rnaseq_utils_BAMobject *)__pyx_v_self->__pyx_vtab)->matches_masking_sequence(__pyx_v_self, __pyx_v_chrom, __pyx_v_left_pos, __pyx_v_strand, __pyx_n_u_S, __pyx_t_11) != 0));

        /* "_rnaseq_utils.pyx":2234
 *                 if s_tag:
 *                     s_tag = not self.matches_masking_sequence(chrom, left_pos, strand, 'S', min(max(5,head), len(self.dataset.start_seq)))
 *                     capped = capped and s_tag             # <<<<<<<<<<<<<<
 *                 if e_tag:
 *                     e_tag = not self.matches_masking_sequence(chrom, right_pos, strand, 'E', min(max(5,tail),len(self.dataset.end_seq)))
 */
        __pyx_t_1 = (__pyx_v_capped != 0);
        if (__pyx_t_1) {
        } else {
          __pyx_t_2 = __pyx_t_1;
          goto __pyx_L71_bool_binop_done;
        }
        __pyx_t_1 = (__pyx_v_s_tag != 0);
        __pyx_t_2 = __pyx_t_1;
        __pyx_L71_bool_binop_done:;
        __pyx_v_capped = __pyx_t_2;

        /* "_rnaseq_utils.pyx":2232
 *         if self.dataset.has_genome:
 *             if strand == 1:
 *                 if s_tag:             # <<<<<<<<<<<<<<
 *                     s_tag = not self.matches_masking_sequence(chrom, left_pos, strand, 'S', min(max(5,head), len(self.dataset.start_seq)))
 *                     capped = capped and s_tag
 */
      }

      /* "_rnaseq_utils.pyx":2235
 *                     s_tag = not self.matches_masking_sequence(chrom, left_pos, strand, 'S', min(max(5,head), len(self.dataset.start_seq)))
 *                     capped = capped and s_tag
 *                 if e_tag:             # <<<<<<<<<<<<<<
 *                     e_tag = not self.matches_masking_sequence(chrom, right_pos, strand, 'E', min(max(5,tail),len(self.dataset.end_seq)))
 *             elif strand == -1:
 */
      __pyx_t_2 = (__pyx_v_e_tag != 0);
      if (__pyx_t_2) {

        /* "_rnaseq_utils.pyx":2236
 *                     capped = capped and s_tag
 *                 if e_tag:
 *                     e_tag = not self.matches_masking_sequence(chrom, right_pos, strand, 'E', min(max(5,tail),len(self.dataset.end_seq)))             # <<<<<<<<<<<<<<
 *             elif strand == -1:
 *                 if s_tag:
 */
        __pyx_t_8 = __pyx_v_self->dataset->end_seq;
        __Pyx_INCREF(__pyx_t_8);
        if (unlikely(__pyx_t_8 == Py_None)) {
          PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
          __PYX_ERR(0, 2236, __pyx_L1_error)
        }
        __pyx_t_11 = __Pyx_PyUnicode_GET_LENGTH(__pyx_t_8); if (unlikely(__pyx_t_11 == ((Py_ssize_t)-1))) __PYX_ERR(0, 2236, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        __pyx_t_3 = __pyx_v_tail;
        __pyx_t_5 = 5;
        if (((__pyx_t_3 > __pyx_t_5) != 0)) {
          __pyx_t_4 = __pyx_t_3;
        } else {
          __pyx_t_4 = __pyx_t_5;
        }
        __pyx_t_5 = __pyx_t_4;
        if (((__pyx_t_11 < __pyx_t_5) != 0)) {
          __pyx_t_7 = __pyx_t_11;
        } else {
          __pyx_t_7 = __pyx_t_5;
        }
        __pyx_v_e_tag = (!(((struct __pyx_vtabstruct_13_rnaseq_utils_BAMobject *)__pyx_v_self->__pyx_vtab)->matches_masking_sequence(__pyx_v_self, __pyx_v_chrom, __pyx_v_right_pos, __pyx_v_strand, __pyx_n_u_E, __pyx_t_7) != 0));

        /* "_rnaseq_utils.pyx":2235
 *                     s_tag = not self.matches_masking_sequence(chrom, left_pos, strand, 'S', min(max(5,head), len(self.dataset.start_seq)))
 *                     capped = capped and s_tag
 *                 if e_tag:             # <<<<<<<<<<<<<<
 *                     e_tag = not self.matches_masking_sequence(chrom, right_pos, strand, 'E', min(max(5,tail),len(self.dataset.end_seq)))
 *             elif strand == -1:
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 *         from pickle import PickleError as __pyx_PickleError
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 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x572d69e, 0xae3a5f0, 0xb872da6) = (capped, chrom_array, chrom_dict, chrom_index, chrom_lengths, config, e_tag, end_array, end_seq, end_seq_rc, error_rate, gene_delim, genome, gff_config, gtf_config, has_genome, ignore_ends, label_tally, labels_are_trimmed, max_headclip, max_intron, minlen, minlen_loose, minlen_strict, mismatch_rate, quality_filter, read_list, reference_dict, remove_gapped_termini, remove_noncanonical, reverse, s_tag, secondary, sj_set, sj_shift, source_array, source_dict, source_index, start_array, start_seq, start_seq_rc, stranded, verbose))" % __pyx_checksum)
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 *                 have_start, have_stop, have_step,
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 *             new_ndim += 1             # <<<<<<<<<<<<<<
 * 
 *     if isinstance(memview, _memoryviewslice):
 */
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 *     cdef bint have_start, have_stop, have_step
 * 
 *     for dim, index in enumerate(indices):             # <<<<<<<<<<<<<<
 *         if PyIndex_Check(index):
 *             slice_memviewslice(
 */
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  /* "View.MemoryView":776
 *             new_ndim += 1
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,
 */
  __pyx_t_1 = __Pyx_TypeCheck(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type); 
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":777
 * 
 *     if isinstance(memview, _memoryviewslice):
 *         return memoryview_fromslice(dst, new_ndim,             # <<<<<<<<<<<<<<
 *                                     memviewsliceobj.to_object_func,
 *                                     memviewsliceobj.to_dtype_func,
 */
    __Pyx_XDECREF(((PyObject *)__pyx_r));

    /* "View.MemoryView":778
 *     if isinstance(memview, _memoryviewslice):
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,             # <<<<<<<<<<<<<<
 *                                     memviewsliceobj.to_dtype_func,
 *                                     memview.dtype_is_object)
 */
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    /* "View.MemoryView":779
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,
 *                                     memviewsliceobj.to_dtype_func,             # <<<<<<<<<<<<<<
 *                                     memview.dtype_is_object)
 *     else:
 */
    if (unlikely(!__pyx_v_memviewsliceobj)) { __Pyx_RaiseUnboundLocalError("memviewsliceobj"); __PYX_ERR(1, 779, __pyx_L1_error) }

    /* "View.MemoryView":777
 * 
 *     if isinstance(memview, _memoryviewslice):
 *         return memoryview_fromslice(dst, new_ndim,             # <<<<<<<<<<<<<<
 *                                     memviewsliceobj.to_object_func,
 *                                     memviewsliceobj.to_dtype_func,
 */
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    __Pyx_GOTREF(__pyx_t_3);
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    __pyx_t_3 = 0;
    goto __pyx_L0;

    /* "View.MemoryView":776
 *             new_ndim += 1
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,
 */
  }

  /* "View.MemoryView":782
 *                                     memview.dtype_is_object)
 *     else:
 *         return memoryview_fromslice(dst, new_ndim, NULL, NULL,             # <<<<<<<<<<<<<<
 *                                     memview.dtype_is_object)
 * 
 */
  /*else*/ {
    __Pyx_XDECREF(((PyObject *)__pyx_r));

    /* "View.MemoryView":783
 *     else:
 *         return memoryview_fromslice(dst, new_ndim, NULL, NULL,
 *                                     memview.dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __pyx_t_3 = __pyx_memoryview_fromslice(__pyx_v_dst, __pyx_v_new_ndim, NULL, NULL, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 782, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);

    /* "View.MemoryView":782
 *                                     memview.dtype_is_object)
 *     else:
 *         return memoryview_fromslice(dst, new_ndim, NULL, NULL,             # <<<<<<<<<<<<<<
 *                                     memview.dtype_is_object)
 * 
 */
    if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_memoryview_type))))) __PYX_ERR(1, 782, __pyx_L1_error)
    __pyx_r = ((struct __pyx_memoryview_obj *)__pyx_t_3);
    __pyx_t_3 = 0;
    goto __pyx_L0;
  }

  /* "View.MemoryView":710
 * 
 * @cname('__pyx_memview_slice')
 * cdef memoryview memview_slice(memoryview memview, object indices):             # <<<<<<<<<<<<<<
 *     cdef int new_ndim = 0, suboffset_dim = -1, dim
 *     cdef bint negative_step
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_AddTraceback("View.MemoryView.memview_slice", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_memviewsliceobj);
  __Pyx_XDECREF(__pyx_v_index);
  __Pyx_XGIVEREF((PyObject *)__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":807
 * 
 * @cname('__pyx_memoryview_slice_memviewslice')
 * cdef int slice_memviewslice(             # <<<<<<<<<<<<<<
 *         __Pyx_memviewslice *dst,
 *         Py_ssize_t shape, Py_ssize_t stride, Py_ssize_t suboffset,
 */

static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, Py_ssize_t __pyx_v_shape, Py_ssize_t __pyx_v_stride, Py_ssize_t __pyx_v_suboffset, int __pyx_v_dim, int __pyx_v_new_ndim, int *__pyx_v_suboffset_dim, Py_ssize_t __pyx_v_start, Py_ssize_t __pyx_v_stop, Py_ssize_t __pyx_v_step, int __pyx_v_have_start, int __pyx_v_have_stop, int __pyx_v_have_step, int __pyx_v_is_slice) {
  Py_ssize_t __pyx_v_new_shape;
  int __pyx_v_negative_step;
  int __pyx_r;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;

  /* "View.MemoryView":827
 *     cdef bint negative_step
 * 
 *     if not is_slice:             # <<<<<<<<<<<<<<
 * 
 *         if start < 0:
 */
  __pyx_t_1 = ((!(__pyx_v_is_slice != 0)) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":829
 *     if not is_slice:
 * 
 *         if start < 0:             # <<<<<<<<<<<<<<
 *             start += shape
 *         if not 0 <= start < shape:
 */
    __pyx_t_1 = ((__pyx_v_start < 0) != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":830
 * 
 *         if start < 0:
 *             start += shape             # <<<<<<<<<<<<<<
 *         if not 0 <= start < shape:
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)
 */
      __pyx_v_start = (__pyx_v_start + __pyx_v_shape);

      /* "View.MemoryView":829
 *     if not is_slice:
 * 
 *         if start < 0:             # <<<<<<<<<<<<<<
 *             start += shape
 *         if not 0 <= start < shape:
 */
    }

    /* "View.MemoryView":831
 *         if start < 0:
 *             start += shape
 *         if not 0 <= start < shape:             # <<<<<<<<<<<<<<
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)
 *     else:
 */
    __pyx_t_1 = (0 <= __pyx_v_start);
    if (__pyx_t_1) {
      __pyx_t_1 = (__pyx_v_start < __pyx_v_shape);
    }
    __pyx_t_2 = ((!(__pyx_t_1 != 0)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":832
 *             start += shape
 *         if not 0 <= start < shape:
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)             # <<<<<<<<<<<<<<
 *     else:
 * 
 */
      __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_IndexError, ((char *)"Index out of bounds (axis %d)"), __pyx_v_dim); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(1, 832, __pyx_L1_error)

      /* "View.MemoryView":831
 *         if start < 0:
 *             start += shape
 *         if not 0 <= start < shape:             # <<<<<<<<<<<<<<
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)
 *     else:
 */
    }

    /* "View.MemoryView":827
 *     cdef bint negative_step
 * 
 *     if not is_slice:             # <<<<<<<<<<<<<<
 * 
 *         if start < 0:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":835
 *     else:
 * 
 *         negative_step = have_step != 0 and step < 0             # <<<<<<<<<<<<<<
 * 
 *         if have_step and step == 0:
 */
  /*else*/ {
    __pyx_t_1 = ((__pyx_v_have_step != 0) != 0);
    if (__pyx_t_1) {
    } else {
      __pyx_t_2 = __pyx_t_1;
      goto __pyx_L6_bool_binop_done;
    }
    __pyx_t_1 = ((__pyx_v_step < 0) != 0);
    __pyx_t_2 = __pyx_t_1;
    __pyx_L6_bool_binop_done:;
    __pyx_v_negative_step = __pyx_t_2;

    /* "View.MemoryView":837
 *         negative_step = have_step != 0 and step < 0
 * 
 *         if have_step and step == 0:             # <<<<<<<<<<<<<<
 *             _err_dim(ValueError, "Step may not be zero (axis %d)", dim)
 * 
 */
    __pyx_t_1 = (__pyx_v_have_step != 0);
    if (__pyx_t_1) {
    } else {
      __pyx_t_2 = __pyx_t_1;
      goto __pyx_L9_bool_binop_done;
    }
    __pyx_t_1 = ((__pyx_v_step == 0) != 0);
    __pyx_t_2 = __pyx_t_1;
    __pyx_L9_bool_binop_done:;
    if (__pyx_t_2) {

      /* "View.MemoryView":838
 * 
 *         if have_step and step == 0:
 *             _err_dim(ValueError, "Step may not be zero (axis %d)", dim)             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_ValueError, ((char *)"Step may not be zero (axis %d)"), __pyx_v_dim); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(1, 838, __pyx_L1_error)

      /* "View.MemoryView":837
 *         negative_step = have_step != 0 and step < 0
 * 
 *         if have_step and step == 0:             # <<<<<<<<<<<<<<
 *             _err_dim(ValueError, "Step may not be zero (axis %d)", dim)
 * 
 */
    }

    /* "View.MemoryView":841
 * 
 * 
 *         if have_start:             # <<<<<<<<<<<<<<
 *             if start < 0:
 *                 start += shape
 */
    __pyx_t_2 = (__pyx_v_have_start != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":842
 * 
 *         if have_start:
 *             if start < 0:             # <<<<<<<<<<<<<<
 *                 start += shape
 *                 if start < 0:
 */
      __pyx_t_2 = ((__pyx_v_start < 0) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":843
 *         if have_start:
 *             if start < 0:
 *                 start += shape             # <<<<<<<<<<<<<<
 *                 if start < 0:
 *                     start = 0
 */
        __pyx_v_start = (__pyx_v_start + __pyx_v_shape);

        /* "View.MemoryView":844
 *             if start < 0:
 *                 start += shape
 *                 if start < 0:             # <<<<<<<<<<<<<<
 *                     start = 0
 *             elif start >= shape:
 */
        __pyx_t_2 = ((__pyx_v_start < 0) != 0);
        if (__pyx_t_2) {

          /* "View.MemoryView":845
 *                 start += shape
 *                 if start < 0:
 *                     start = 0             # <<<<<<<<<<<<<<
 *             elif start >= shape:
 *                 if negative_step:
 */
          __pyx_v_start = 0;

          /* "View.MemoryView":844
 *             if start < 0:
 *                 start += shape
 *                 if start < 0:             # <<<<<<<<<<<<<<
 *                     start = 0
 *             elif start >= shape:
 */
        }

        /* "View.MemoryView":842
 * 
 *         if have_start:
 *             if start < 0:             # <<<<<<<<<<<<<<
 *                 start += shape
 *                 if start < 0:
 */
        goto __pyx_L12;
      }

      /* "View.MemoryView":846
 *                 if start < 0:
 *                     start = 0
 *             elif start >= shape:             # <<<<<<<<<<<<<<
 *                 if negative_step:
 *                     start = shape - 1
 */
      __pyx_t_2 = ((__pyx_v_start >= __pyx_v_shape) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":847
 *                     start = 0
 *             elif start >= shape:
 *                 if negative_step:             # <<<<<<<<<<<<<<
 *                     start = shape - 1
 *                 else:
 */
        __pyx_t_2 = (__pyx_v_negative_step != 0);
        if (__pyx_t_2) {

          /* "View.MemoryView":848
 *             elif start >= shape:
 *                 if negative_step:
 *                     start = shape - 1             # <<<<<<<<<<<<<<
 *                 else:
 *                     start = shape
 */
          __pyx_v_start = (__pyx_v_shape - 1);

          /* "View.MemoryView":847
 *                     start = 0
 *             elif start >= shape:
 *                 if negative_step:             # <<<<<<<<<<<<<<
 *                     start = shape - 1
 *                 else:
 */
          goto __pyx_L14;
        }

        /* "View.MemoryView":850
 *                     start = shape - 1
 *                 else:
 *                     start = shape             # <<<<<<<<<<<<<<
 *         else:
 *             if negative_step:
 */
        /*else*/ {
          __pyx_v_start = __pyx_v_shape;
        }
        __pyx_L14:;

        /* "View.MemoryView":846
 *                 if start < 0:
 *                     start = 0
 *             elif start >= shape:             # <<<<<<<<<<<<<<
 *                 if negative_step:
 *                     start = shape - 1
 */
      }
      __pyx_L12:;

      /* "View.MemoryView":841
 * 
 * 
 *         if have_start:             # <<<<<<<<<<<<<<
 *             if start < 0:
 *                 start += shape
 */
      goto __pyx_L11;
    }

    /* "View.MemoryView":852
 *                     start = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 start = shape - 1
 *             else:
 */
    /*else*/ {
      __pyx_t_2 = (__pyx_v_negative_step != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":853
 *         else:
 *             if negative_step:
 *                 start = shape - 1             # <<<<<<<<<<<<<<
 *             else:
 *                 start = 0
 */
        __pyx_v_start = (__pyx_v_shape - 1);

        /* "View.MemoryView":852
 *                     start = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 start = shape - 1
 *             else:
 */
        goto __pyx_L15;
      }

      /* "View.MemoryView":855
 *                 start = shape - 1
 *             else:
 *                 start = 0             # <<<<<<<<<<<<<<
 * 
 *         if have_stop:
 */
      /*else*/ {
        __pyx_v_start = 0;
      }
      __pyx_L15:;
    }
    __pyx_L11:;

    /* "View.MemoryView":857
 *                 start = 0
 * 
 *         if have_stop:             # <<<<<<<<<<<<<<
 *             if stop < 0:
 *                 stop += shape
 */
    __pyx_t_2 = (__pyx_v_have_stop != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":858
 * 
 *         if have_stop:
 *             if stop < 0:             # <<<<<<<<<<<<<<
 *                 stop += shape
 *                 if stop < 0:
 */
      __pyx_t_2 = ((__pyx_v_stop < 0) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":859
 *         if have_stop:
 *             if stop < 0:
 *                 stop += shape             # <<<<<<<<<<<<<<
 *                 if stop < 0:
 *                     stop = 0
 */
        __pyx_v_stop = (__pyx_v_stop + __pyx_v_shape);

        /* "View.MemoryView":860
 *             if stop < 0:
 *                 stop += shape
 *                 if stop < 0:             # <<<<<<<<<<<<<<
 *                     stop = 0
 *             elif stop > shape:
 */
        __pyx_t_2 = ((__pyx_v_stop < 0) != 0);
        if (__pyx_t_2) {

          /* "View.MemoryView":861
 *                 stop += shape
 *                 if stop < 0:
 *                     stop = 0             # <<<<<<<<<<<<<<
 *             elif stop > shape:
 *                 stop = shape
 */
          __pyx_v_stop = 0;

          /* "View.MemoryView":860
 *             if stop < 0:
 *                 stop += shape
 *                 if stop < 0:             # <<<<<<<<<<<<<<
 *                     stop = 0
 *             elif stop > shape:
 */
        }

        /* "View.MemoryView":858
 * 
 *         if have_stop:
 *             if stop < 0:             # <<<<<<<<<<<<<<
 *                 stop += shape
 *                 if stop < 0:
 */
        goto __pyx_L17;
      }

      /* "View.MemoryView":862
 *                 if stop < 0:
 *                     stop = 0
 *             elif stop > shape:             # <<<<<<<<<<<<<<
 *                 stop = shape
 *         else:
 */
      __pyx_t_2 = ((__pyx_v_stop > __pyx_v_shape) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":863
 *                     stop = 0
 *             elif stop > shape:
 *                 stop = shape             # <<<<<<<<<<<<<<
 *         else:
 *             if negative_step:
 */
        __pyx_v_stop = __pyx_v_shape;

        /* "View.MemoryView":862
 *                 if stop < 0:
 *                     stop = 0
 *             elif stop > shape:             # <<<<<<<<<<<<<<
 *                 stop = shape
 *         else:
 */
      }
      __pyx_L17:;

      /* "View.MemoryView":857
 *                 start = 0
 * 
 *         if have_stop:             # <<<<<<<<<<<<<<
 *             if stop < 0:
 *                 stop += shape
 */
      goto __pyx_L16;
    }

    /* "View.MemoryView":865
 *                 stop = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 stop = -1
 *             else:
 */
    /*else*/ {
      __pyx_t_2 = (__pyx_v_negative_step != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":866
 *         else:
 *             if negative_step:
 *                 stop = -1             # <<<<<<<<<<<<<<
 *             else:
 *                 stop = shape
 */
        __pyx_v_stop = -1L;

        /* "View.MemoryView":865
 *                 stop = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 stop = -1
 *             else:
 */
        goto __pyx_L19;
      }

      /* "View.MemoryView":868
 *                 stop = -1
 *             else:
 *                 stop = shape             # <<<<<<<<<<<<<<
 * 
 *         if not have_step:
 */
      /*else*/ {
        __pyx_v_stop = __pyx_v_shape;
      }
      __pyx_L19:;
    }
    __pyx_L16:;

    /* "View.MemoryView":870
 *                 stop = shape
 * 
 *         if not have_step:             # <<<<<<<<<<<<<<
 *             step = 1
 * 
 */
    __pyx_t_2 = ((!(__pyx_v_have_step != 0)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":871
 * 
 *         if not have_step:
 *             step = 1             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_v_step = 1;

      /* "View.MemoryView":870
 *                 stop = shape
 * 
 *         if not have_step:             # <<<<<<<<<<<<<<
 *             step = 1
 * 
 */
    }

    /* "View.MemoryView":875
 * 
 *         with cython.cdivision(True):
 *             new_shape = (stop - start) // step             # <<<<<<<<<<<<<<
 * 
 *             if (stop - start) - step * new_shape:
 */
    __pyx_v_new_shape = ((__pyx_v_stop - __pyx_v_start) / __pyx_v_step);

    /* "View.MemoryView":877
 *             new_shape = (stop - start) // step
 * 
 *             if (stop - start) - step * new_shape:             # <<<<<<<<<<<<<<
 *                 new_shape += 1
 * 
 */
    __pyx_t_2 = (((__pyx_v_stop - __pyx_v_start) - (__pyx_v_step * __pyx_v_new_shape)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":878
 * 
 *             if (stop - start) - step * new_shape:
 *                 new_shape += 1             # <<<<<<<<<<<<<<
 * 
 *         if new_shape < 0:
 */
      __pyx_v_new_shape = (__pyx_v_new_shape + 1);

      /* "View.MemoryView":877
 *             new_shape = (stop - start) // step
 * 
 *             if (stop - start) - step * new_shape:             # <<<<<<<<<<<<<<
 *                 new_shape += 1
 * 
 */
    }

    /* "View.MemoryView":880
 *                 new_shape += 1
 * 
 *         if new_shape < 0:             # <<<<<<<<<<<<<<
 *             new_shape = 0
 * 
 */
    __pyx_t_2 = ((__pyx_v_new_shape < 0) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":881
 * 
 *         if new_shape < 0:
 *             new_shape = 0             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_v_new_shape = 0;

      /* "View.MemoryView":880
 *                 new_shape += 1
 * 
 *         if new_shape < 0:             # <<<<<<<<<<<<<<
 *             new_shape = 0
 * 
 */
    }

    /* "View.MemoryView":884
 * 
 * 
 *         dst.strides[new_ndim] = stride * step             # <<<<<<<<<<<<<<
 *         dst.shape[new_ndim] = new_shape
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 */
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 *     cdef __Pyx_memviewslice memviewslice
 */

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/* "View.MemoryView":1087
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 *     """
 *     Create a new memoryview object from a given memoryview object and slice.
 */

static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview_obj *__pyx_v_memview, __Pyx_memviewslice *__pyx_v_memviewslice) {
  PyObject *(*__pyx_v_to_object_func)(char *);
  int (*__pyx_v_to_dtype_func)(char *, PyObject *);
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *(*__pyx_t_3)(char *);
  int (*__pyx_t_4)(char *, PyObject *);
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
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 *     cdef int (*to_dtype_func)(char *, object) except 0
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
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    /* "View.MemoryView":1095
 * 
 *     if isinstance(memview, _memoryviewslice):
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 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func
 *     else:
 */
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 *     if isinstance(memview, _memoryviewslice):
 *         to_object_func = (<_memoryviewslice> memview).to_object_func
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func             # <<<<<<<<<<<<<<
 *     else:
 *         to_object_func = NULL
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    /* "View.MemoryView":1094
 *     cdef int (*to_dtype_func)(char *, object) except 0
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         to_object_func = (<_memoryviewslice> memview).to_object_func
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func
 */
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  /* "View.MemoryView":1098
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func
 *     else:
 *         to_object_func = NULL             # <<<<<<<<<<<<<<
 *         to_dtype_func = NULL
 * 
 */
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 *         to_dtype_func = NULL             # <<<<<<<<<<<<<<
 * 
 *     return memoryview_fromslice(memviewslice[0], memview.view.ndim,
 */
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 *         to_dtype_func = NULL
 * 
 *     return memoryview_fromslice(memviewslice[0], memview.view.ndim,             # <<<<<<<<<<<<<<
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 *                                 memview.dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 * 
 */
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  /* "View.MemoryView":1087
 * 
 * @cname('__pyx_memoryview_copy_object_from_slice')
 * cdef memoryview_copy_from_slice(memoryview memview, __Pyx_memviewslice *memviewslice):             # <<<<<<<<<<<<<<
 *     """
 *     Create a new memoryview object from a given memoryview object and slice.
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_5);
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/* "View.MemoryView":1109
 * 
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:             # <<<<<<<<<<<<<<
 *     if arg < 0:
 *         return -arg
 */

static Py_ssize_t abs_py_ssize_t(Py_ssize_t __pyx_v_arg) {
  Py_ssize_t __pyx_r;
  int __pyx_t_1;

  /* "View.MemoryView":1110
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:
 *     if arg < 0:             # <<<<<<<<<<<<<<
 *         return -arg
 *     else:
 */
  __pyx_t_1 = ((__pyx_v_arg < 0) != 0);
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    /* "View.MemoryView":1111
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:
 *     if arg < 0:
 *         return -arg             # <<<<<<<<<<<<<<
 *     else:
 *         return arg
 */
    __pyx_r = (-__pyx_v_arg);
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    /* "View.MemoryView":1110
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:
 *     if arg < 0:             # <<<<<<<<<<<<<<
 *         return -arg
 *     else:
 */
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  /* "View.MemoryView":1113
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 *     else:
 *         return arg             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_get_best_slice_order')
 */
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  /* "View.MemoryView":1109
 * 
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:             # <<<<<<<<<<<<<<
 *     if arg < 0:
 *         return -arg
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1116
 * 
 * @cname('__pyx_get_best_slice_order')
 * cdef char get_best_order(__Pyx_memviewslice *mslice, int ndim) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     Figure out the best memory access order for a given slice.
 */

static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int __pyx_v_ndim) {
  int __pyx_v_i;
  Py_ssize_t __pyx_v_c_stride;
  Py_ssize_t __pyx_v_f_stride;
  char __pyx_r;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;

  /* "View.MemoryView":1121
 *     """
 *     cdef int i
 *     cdef Py_ssize_t c_stride = 0             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t f_stride = 0
 * 
 */
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  /* "View.MemoryView":1122
 *     cdef int i
 *     cdef Py_ssize_t c_stride = 0
 *     cdef Py_ssize_t f_stride = 0             # <<<<<<<<<<<<<<
 * 
 *     for i in range(ndim - 1, -1, -1):
 */
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  /* "View.MemoryView":1124
 *     cdef Py_ssize_t f_stride = 0
 * 
 *     for i in range(ndim - 1, -1, -1):             # <<<<<<<<<<<<<<
 *         if mslice.shape[i] > 1:
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 */
  for (__pyx_t_1 = (__pyx_v_ndim - 1); __pyx_t_1 > -1; __pyx_t_1-=1) {
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    /* "View.MemoryView":1125
 * 
 *     for i in range(ndim - 1, -1, -1):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             c_stride = mslice.strides[i]
 *             break
 */
    __pyx_t_2 = (((__pyx_v_mslice->shape[__pyx_v_i]) > 1) != 0);
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      /* "View.MemoryView":1126
 *     for i in range(ndim - 1, -1, -1):
 *         if mslice.shape[i] > 1:
 *             c_stride = mslice.strides[i]             # <<<<<<<<<<<<<<
 *             break
 * 
 */
      __pyx_v_c_stride = (__pyx_v_mslice->strides[__pyx_v_i]);

      /* "View.MemoryView":1127
 *         if mslice.shape[i] > 1:
 *             c_stride = mslice.strides[i]
 *             break             # <<<<<<<<<<<<<<
 * 
 *     for i in range(ndim):
 */
      goto __pyx_L4_break;

      /* "View.MemoryView":1125
 * 
 *     for i in range(ndim - 1, -1, -1):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             c_stride = mslice.strides[i]
 *             break
 */
    }
  }
  __pyx_L4_break:;

  /* "View.MemoryView":1129
 *             break
 * 
 *     for i in range(ndim):             # <<<<<<<<<<<<<<
 *         if mslice.shape[i] > 1:
 *             f_stride = mslice.strides[i]
 */
  __pyx_t_1 = __pyx_v_ndim;
  __pyx_t_3 = __pyx_t_1;
  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
    __pyx_v_i = __pyx_t_4;

    /* "View.MemoryView":1130
 * 
 *     for i in range(ndim):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             f_stride = mslice.strides[i]
 *             break
 */
    __pyx_t_2 = (((__pyx_v_mslice->shape[__pyx_v_i]) > 1) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1131
 *     for i in range(ndim):
 *         if mslice.shape[i] > 1:
 *             f_stride = mslice.strides[i]             # <<<<<<<<<<<<<<
 *             break
 * 
 */
      __pyx_v_f_stride = (__pyx_v_mslice->strides[__pyx_v_i]);

      /* "View.MemoryView":1132
 *         if mslice.shape[i] > 1:
 *             f_stride = mslice.strides[i]
 *             break             # <<<<<<<<<<<<<<
 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):
 */
      goto __pyx_L7_break;

      /* "View.MemoryView":1130
 * 
 *     for i in range(ndim):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             f_stride = mslice.strides[i]
 *             break
 */
    }
  }
  __pyx_L7_break:;

  /* "View.MemoryView":1134
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 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):             # <<<<<<<<<<<<<<
 *         return 'C'
 *     else:
 */
  __pyx_t_2 = ((abs_py_ssize_t(__pyx_v_c_stride) <= abs_py_ssize_t(__pyx_v_f_stride)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1135
 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):
 *         return 'C'             # <<<<<<<<<<<<<<
 *     else:
 *         return 'F'
 */
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    /* "View.MemoryView":1134
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 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):             # <<<<<<<<<<<<<<
 *         return 'C'
 *     else:
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  /* "View.MemoryView":1137
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 *     else:
 *         return 'F'             # <<<<<<<<<<<<<<
 * 
 * @cython.cdivision(True)
 */
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 * 
 * @cname('__pyx_get_best_slice_order')
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  /* function exit code */
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/* "View.MemoryView":1140
 * 
 * @cython.cdivision(True)
 * cdef void _copy_strided_to_strided(char *src_data, Py_ssize_t *src_strides,             # <<<<<<<<<<<<<<
 *                                    char *dst_data, Py_ssize_t *dst_strides,
 *                                    Py_ssize_t *src_shape, Py_ssize_t *dst_shape,
 */

static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v_src_strides, char *__pyx_v_dst_data, Py_ssize_t *__pyx_v_dst_strides, Py_ssize_t *__pyx_v_src_shape, Py_ssize_t *__pyx_v_dst_shape, int __pyx_v_ndim, size_t __pyx_v_itemsize) {
  CYTHON_UNUSED Py_ssize_t __pyx_v_i;
  CYTHON_UNUSED Py_ssize_t __pyx_v_src_extent;
  Py_ssize_t __pyx_v_dst_extent;
  Py_ssize_t __pyx_v_src_stride;
  Py_ssize_t __pyx_v_dst_stride;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  Py_ssize_t __pyx_t_4;
  Py_ssize_t __pyx_t_5;
  Py_ssize_t __pyx_t_6;

  /* "View.MemoryView":1147
 * 
 *     cdef Py_ssize_t i
 *     cdef Py_ssize_t src_extent = src_shape[0]             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t dst_extent = dst_shape[0]
 *     cdef Py_ssize_t src_stride = src_strides[0]
 */
  __pyx_v_src_extent = (__pyx_v_src_shape[0]);

  /* "View.MemoryView":1148
 *     cdef Py_ssize_t i
 *     cdef Py_ssize_t src_extent = src_shape[0]
 *     cdef Py_ssize_t dst_extent = dst_shape[0]             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t src_stride = src_strides[0]
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 */
  __pyx_v_dst_extent = (__pyx_v_dst_shape[0]);

  /* "View.MemoryView":1149
 *     cdef Py_ssize_t src_extent = src_shape[0]
 *     cdef Py_ssize_t dst_extent = dst_shape[0]
 *     cdef Py_ssize_t src_stride = src_strides[0]             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 * 
 */
  __pyx_v_src_stride = (__pyx_v_src_strides[0]);

  /* "View.MemoryView":1150
 *     cdef Py_ssize_t dst_extent = dst_shape[0]
 *     cdef Py_ssize_t src_stride = src_strides[0]
 *     cdef Py_ssize_t dst_stride = dst_strides[0]             # <<<<<<<<<<<<<<
 * 
 *     if ndim == 1:
 */
  __pyx_v_dst_stride = (__pyx_v_dst_strides[0]);

  /* "View.MemoryView":1152
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 * 
 *     if ndim == 1:             # <<<<<<<<<<<<<<
 *        if (src_stride > 0 and dst_stride > 0 and
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 */
  __pyx_t_1 = ((__pyx_v_ndim == 1) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1153
 * 
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and             # <<<<<<<<<<<<<<
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 */
    __pyx_t_2 = ((__pyx_v_src_stride > 0) != 0);
    if (__pyx_t_2) {
    } else {
      __pyx_t_1 = __pyx_t_2;
      goto __pyx_L5_bool_binop_done;
    }
    __pyx_t_2 = ((__pyx_v_dst_stride > 0) != 0);
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    } else {
      __pyx_t_1 = __pyx_t_2;
      goto __pyx_L5_bool_binop_done;
    }

    /* "View.MemoryView":1154
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):             # <<<<<<<<<<<<<<
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 *        else:
 */
    __pyx_t_2 = (((size_t)__pyx_v_src_stride) == __pyx_v_itemsize);
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    __pyx_t_1 = __pyx_t_3;
    __pyx_L5_bool_binop_done:;

    /* "View.MemoryView":1153
 * 
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and             # <<<<<<<<<<<<<<
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 */
    if (__pyx_t_1) {

      /* "View.MemoryView":1155
 *        if (src_stride > 0 and dst_stride > 0 and
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)             # <<<<<<<<<<<<<<
 *        else:
 *            for i in range(dst_extent):
 */
      (void)(memcpy(__pyx_v_dst_data, __pyx_v_src_data, (__pyx_v_itemsize * __pyx_v_dst_extent)));

      /* "View.MemoryView":1153
 * 
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and             # <<<<<<<<<<<<<<
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 */
      goto __pyx_L4;
    }

    /* "View.MemoryView":1157
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 *        else:
 *            for i in range(dst_extent):             # <<<<<<<<<<<<<<
 *                memcpy(dst_data, src_data, itemsize)
 *                src_data += src_stride
 */
    /*else*/ {
      __pyx_t_4 = __pyx_v_dst_extent;
      __pyx_t_5 = __pyx_t_4;
      for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
        __pyx_v_i = __pyx_t_6;

        /* "View.MemoryView":1158
 *        else:
 *            for i in range(dst_extent):
 *                memcpy(dst_data, src_data, itemsize)             # <<<<<<<<<<<<<<
 *                src_data += src_stride
 *                dst_data += dst_stride
 */
        (void)(memcpy(__pyx_v_dst_data, __pyx_v_src_data, __pyx_v_itemsize));

        /* "View.MemoryView":1159
 *            for i in range(dst_extent):
 *                memcpy(dst_data, src_data, itemsize)
 *                src_data += src_stride             # <<<<<<<<<<<<<<
 *                dst_data += dst_stride
 *     else:
 */
        __pyx_v_src_data = (__pyx_v_src_data + __pyx_v_src_stride);

        /* "View.MemoryView":1160
 *                memcpy(dst_data, src_data, itemsize)
 *                src_data += src_stride
 *                dst_data += dst_stride             # <<<<<<<<<<<<<<
 *     else:
 *         for i in range(dst_extent):
 */
        __pyx_v_dst_data = (__pyx_v_dst_data + __pyx_v_dst_stride);
      }
    }
    __pyx_L4:;

    /* "View.MemoryView":1152
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 * 
 *     if ndim == 1:             # <<<<<<<<<<<<<<
 *        if (src_stride > 0 and dst_stride > 0 and
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":1162
 *                dst_data += dst_stride
 *     else:
 *         for i in range(dst_extent):             # <<<<<<<<<<<<<<
 *             _copy_strided_to_strided(src_data, src_strides + 1,
 *                                      dst_data, dst_strides + 1,
 */
  /*else*/ {
    __pyx_t_4 = __pyx_v_dst_extent;
    __pyx_t_5 = __pyx_t_4;
    for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
      __pyx_v_i = __pyx_t_6;

      /* "View.MemoryView":1163
 *     else:
 *         for i in range(dst_extent):
 *             _copy_strided_to_strided(src_data, src_strides + 1,             # <<<<<<<<<<<<<<
 *                                      dst_data, dst_strides + 1,
 *                                      src_shape + 1, dst_shape + 1,
 */
      _copy_strided_to_strided(__pyx_v_src_data, (__pyx_v_src_strides + 1), __pyx_v_dst_data, (__pyx_v_dst_strides + 1), (__pyx_v_src_shape + 1), (__pyx_v_dst_shape + 1), (__pyx_v_ndim - 1), __pyx_v_itemsize);

      /* "View.MemoryView":1167
 *                                      src_shape + 1, dst_shape + 1,
 *                                      ndim - 1, itemsize)
 *             src_data += src_stride             # <<<<<<<<<<<<<<
 *             dst_data += dst_stride
 * 
 */
      __pyx_v_src_data = (__pyx_v_src_data + __pyx_v_src_stride);

      /* "View.MemoryView":1168
 *                                      ndim - 1, itemsize)
 *             src_data += src_stride
 *             dst_data += dst_stride             # <<<<<<<<<<<<<<
 * 
 * cdef void copy_strided_to_strided(__Pyx_memviewslice *src,
 */
      __pyx_v_dst_data = (__pyx_v_dst_data + __pyx_v_dst_stride);
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  /* "View.MemoryView":1140
 * 
 * @cython.cdivision(True)
 * cdef void _copy_strided_to_strided(char *src_data, Py_ssize_t *src_strides,             # <<<<<<<<<<<<<<
 *                                    char *dst_data, Py_ssize_t *dst_strides,
 *                                    Py_ssize_t *src_shape, Py_ssize_t *dst_shape,
 */

  /* function exit code */
}

/* "View.MemoryView":1170
 *             dst_data += dst_stride
 * 
 * cdef void copy_strided_to_strided(__Pyx_memviewslice *src,             # <<<<<<<<<<<<<<
 *                                   __Pyx_memviewslice *dst,
 *                                   int ndim, size_t itemsize) nogil:
 */

static void copy_strided_to_strided(__Pyx_memviewslice *__pyx_v_src, __Pyx_memviewslice *__pyx_v_dst, int __pyx_v_ndim, size_t __pyx_v_itemsize) {

  /* "View.MemoryView":1173
 *                                   __Pyx_memviewslice *dst,
 *                                   int ndim, size_t itemsize) nogil:
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 *                              src.shape, dst.shape, ndim, itemsize)
 * 
 */
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  /* "View.MemoryView":1170
 *             dst_data += dst_stride
 * 
 * cdef void copy_strided_to_strided(__Pyx_memviewslice *src,             # <<<<<<<<<<<<<<
 *                                   __Pyx_memviewslice *dst,
 *                                   int ndim, size_t itemsize) nogil:
 */

  /* function exit code */
}

/* "View.MemoryView":1177
 * 
 * @cname('__pyx_memoryview_slice_get_size')
 * cdef Py_ssize_t slice_get_size(__Pyx_memviewslice *src, int ndim) nogil:             # <<<<<<<<<<<<<<
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 *     cdef Py_ssize_t shape, size = src.memview.view.itemsize
 */

static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *__pyx_v_src, int __pyx_v_ndim) {
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  Py_ssize_t __pyx_t_1;
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  Py_ssize_t *__pyx_t_3;
  Py_ssize_t *__pyx_t_4;

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 *     "Return the size of the memory occupied by the slice in number of bytes"
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 *     for shape in src.shape[:ndim]:
 */
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  /* "View.MemoryView":1181
 *     cdef Py_ssize_t shape, size = src.memview.view.itemsize
 * 
 *     for shape in src.shape[:ndim]:             # <<<<<<<<<<<<<<
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 * 
 */
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    /* "View.MemoryView":1182
 * 
 *     for shape in src.shape[:ndim]:
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 * 
 *     return size
 */
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  /* "View.MemoryView":1184
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 * 
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 * @cname('__pyx_fill_contig_strides_array')
 */
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  /* "View.MemoryView":1177
 * 
 * @cname('__pyx_memoryview_slice_get_size')
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 */

  /* function exit code */
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/* "View.MemoryView":1187
 * 
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static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, Py_ssize_t __pyx_v_stride, int __pyx_v_ndim, char __pyx_v_order) {
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 *     if order == 'F':             # <<<<<<<<<<<<<<
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      /* "View.MemoryView":1198
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      /* "View.MemoryView":1199
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    /* "View.MemoryView":1196
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 *         for idx in range(ndim):
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  /* "View.MemoryView":1201
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      /* "View.MemoryView":1202
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 */
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      /* "View.MemoryView":1203
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  /* "View.MemoryView":1205
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 * 
 *     return stride             # <<<<<<<<<<<<<<
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 * @cname('__pyx_memoryview_copy_data_to_temp')
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  /* "View.MemoryView":1187
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/* "View.MemoryView":1208
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 */
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 * 
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 * 
 *         if slice_is_contig(src, 'C', ndim):
 *             direct_copy = slice_is_contig(dst, 'C', ndim)             # <<<<<<<<<<<<<<
 *         elif slice_is_contig(src, 'F', ndim):
 *             direct_copy = slice_is_contig(dst, 'F', ndim)
 */
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 * 
 * 
 *         if slice_is_contig(src, 'C', ndim):             # <<<<<<<<<<<<<<
 *             direct_copy = slice_is_contig(dst, 'C', ndim)
 *         elif slice_is_contig(src, 'F', ndim):
 */
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    }

    /* "View.MemoryView":1315
 *         if slice_is_contig(src, 'C', ndim):
 *             direct_copy = slice_is_contig(dst, 'C', ndim)
 *         elif slice_is_contig(src, 'F', ndim):             # <<<<<<<<<<<<<<
 *             direct_copy = slice_is_contig(dst, 'F', ndim)
 * 
 */
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      /* "View.MemoryView":1316
 *             direct_copy = slice_is_contig(dst, 'C', ndim)
 *         elif slice_is_contig(src, 'F', ndim):
 *             direct_copy = slice_is_contig(dst, 'F', ndim)             # <<<<<<<<<<<<<<
 * 
 *         if direct_copy:
 */
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      /* "View.MemoryView":1315
 *         if slice_is_contig(src, 'C', ndim):
 *             direct_copy = slice_is_contig(dst, 'C', ndim)
 *         elif slice_is_contig(src, 'F', ndim):             # <<<<<<<<<<<<<<
 *             direct_copy = slice_is_contig(dst, 'F', ndim)
 * 
 */
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 *             direct_copy = slice_is_contig(dst, 'F', ndim)
 * 
 *         if direct_copy:             # <<<<<<<<<<<<<<
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
 */
    __pyx_t_2 = (__pyx_v_direct_copy != 0);
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      /* "View.MemoryView":1320
 *         if direct_copy:
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)             # <<<<<<<<<<<<<<
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))
 *             refcount_copying(&dst, dtype_is_object, ndim, True)
 */
      __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 0);

      /* "View.MemoryView":1321
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))             # <<<<<<<<<<<<<<
 *             refcount_copying(&dst, dtype_is_object, ndim, True)
 *             free(tmpdata)
 */
      (void)(memcpy(__pyx_v_dst.data, __pyx_v_src.data, __pyx_memoryview_slice_get_size((&__pyx_v_src), __pyx_v_ndim)));

      /* "View.MemoryView":1322
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))
 *             refcount_copying(&dst, dtype_is_object, ndim, True)             # <<<<<<<<<<<<<<
 *             free(tmpdata)
 *             return 0
 */
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      /* "View.MemoryView":1323
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))
 *             refcount_copying(&dst, dtype_is_object, ndim, True)
 *             free(tmpdata)             # <<<<<<<<<<<<<<
 *             return 0
 * 
 */
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 *             refcount_copying(&dst, dtype_is_object, ndim, True)
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 *     if order == 'F' == get_best_order(&dst, ndim):
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 *             direct_copy = slice_is_contig(dst, 'F', ndim)
 * 
 *         if direct_copy:             # <<<<<<<<<<<<<<
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
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 *         src = tmp
 * 
 *     if not broadcasting:             # <<<<<<<<<<<<<<
 * 
 * 
 */
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 * 
 *     if order == 'F' == get_best_order(&dst, ndim):             # <<<<<<<<<<<<<<
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 * 
 */
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 * 
 * 
 *         transpose_memslice(&src)             # <<<<<<<<<<<<<<
 *         transpose_memslice(&dst)
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 */
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 * 
 *         transpose_memslice(&src)
 *         transpose_memslice(&dst)             # <<<<<<<<<<<<<<
 * 
 *     refcount_copying(&dst, dtype_is_object, ndim, False)
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 * 
 *     if order == 'F' == get_best_order(&dst, ndim):             # <<<<<<<<<<<<<<
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 * 
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 * 
 *     refcount_copying(&dst, dtype_is_object, ndim, False)             # <<<<<<<<<<<<<<
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 *     refcount_copying(&dst, dtype_is_object, ndim, True)
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 * 
 *     refcount_copying(&dst, dtype_is_object, ndim, False)
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 */
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 *     free(tmpdata)
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 * 
 *     free(tmpdata)             # <<<<<<<<<<<<<<
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 *     free(tmpdata)
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 * 
 *     for i in range(ndim - 1, -1, -1):
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 * 
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 * 
 *     for i in range(offset):
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 */
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 * 
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/* "View.MemoryView":1362
 * 
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 * 
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/* "View.MemoryView":1371
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static void __pyx_memoryview_refcount_objects_in_slice_with_gil(char *__pyx_v_data, Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, int __pyx_v_ndim, int __pyx_v_inc) {
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 * @cname('__pyx_memoryview_refcount_objects_in_slice_with_gil')
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static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, int __pyx_v_ndim, int __pyx_v_inc) {
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/* "View.MemoryView":1397
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static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *__pyx_v_dst, int __pyx_v_ndim, size_t __pyx_v_itemsize, void *__pyx_v_item, int __pyx_v_dtype_is_object) {

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static struct __pyx_vtabstruct_13_rnaseq_utils_RNAseqMapping __pyx_vtable_13_rnaseq_utils_RNAseqMapping;

static PyObject *__pyx_tp_new_13_rnaseq_utils_RNAseqMapping(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
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static void __pyx_tp_dealloc_13_rnaseq_utils_RNAseqMapping(PyObject *o) {
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static int __pyx_tp_traverse_13_rnaseq_utils_RNAseqMapping(PyObject *o, visitproc v, void *a) {
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static int __pyx_tp_clear_13_rnaseq_utils_RNAseqMapping(PyObject *o) {
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static PyObject *__pyx_tp_richcompare_13_rnaseq_utils_RNAseqMapping(PyObject *o1, PyObject *o2, int op) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_chrom(PyObject *o, CYTHON_UNUSED void *x) {
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static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_chrom(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_source(PyObject *o, CYTHON_UNUSED void *x) {
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static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_source(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_strand(PyObject *o, CYTHON_UNUSED void *x) {
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static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_strand(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_s_len(PyObject *o, CYTHON_UNUSED void *x) {
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static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_s_len(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_e_len(PyObject *o, CYTHON_UNUSED void *x) {
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static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_e_len(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_ranges(PyObject *o, CYTHON_UNUSED void *x) {
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static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_ranges(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_splice(PyObject *o, CYTHON_UNUSED void *x) {
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}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_splice(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_s_tag(PyObject *o, CYTHON_UNUSED void *x) {
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}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_s_tag(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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    PyErr_SetString(PyExc_NotImplementedError, "__del__");
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_e_tag(PyObject *o, CYTHON_UNUSED void *x) {
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}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_e_tag(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_capped(PyObject *o, CYTHON_UNUSED void *x) {
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}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_capped(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_complete(PyObject *o, CYTHON_UNUSED void *x) {
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}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_complete(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_is_reference(PyObject *o, CYTHON_UNUSED void *x) {
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}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_is_reference(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_condensed(PyObject *o, CYTHON_UNUSED void *x) {
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}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_condensed(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_attributes(PyObject *o, CYTHON_UNUSED void *x) {
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static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_attributes(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_span(PyObject *o, CYTHON_UNUSED void *x) {
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static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_span(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_weight(PyObject *o, CYTHON_UNUSED void *x) {
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static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_weight(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_coverage(PyObject *o, CYTHON_UNUSED void *x) {
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static int __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_coverage(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
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static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqMapping_tripleweight(PyObject *o, CYTHON_UNUSED void *x) {
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}

static PyMethodDef __pyx_methods_13_rnaseq_utils_RNAseqMapping[] = {
  {"left", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_19left, METH_NOARGS, 0},
  {"right", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_21right, METH_NOARGS, 0},
  {"get_length", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_23get_length, METH_NOARGS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_22get_length},
  {"gaps", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_25gaps, METH_NOARGS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_24gaps},
  {"junctions", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_27junctions, METH_NOARGS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_26junctions},
  {"diff", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_29diff, METH_O, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_28diff},
  {"overlaps", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_31overlaps, METH_O, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_30overlaps},
  {"overlap_range", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_33overlap_range, METH_O, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_32overlap_range},
  {"shared_bases", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_35shared_bases, METH_O, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_34shared_bases},
  {"is_malformed", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_37is_malformed, METH_NOARGS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_36is_malformed},
  {"ends_clash", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_39ends_clash, METH_O, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_38ends_clash},
  {"splice_match", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_41splice_match, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_40splice_match},
  {"antisense_match", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_43antisense_match, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_42antisense_match},
  {"sense_match", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_45sense_match, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_44sense_match},
  {"is_compatible", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_47is_compatible, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_46is_compatible},
  {"is_identical", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_49is_identical, METH_O, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_48is_identical},
  {"merge", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_51merge, METH_O, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_50merge},
  {"get_node_labels", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_53get_node_labels, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_52get_node_labels},
  {"write_as_elr", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_55write_as_elr, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_54write_as_elr},
  {"write_as_bed", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_57write_as_bed, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_56write_as_bed},
  {"write_as_gtf", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_59write_as_gtf, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_58write_as_gtf},
  {"print_attributes", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_61print_attributes, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqMapping_60print_attributes},
  {"__reduce_cython__", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_63__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqMapping_65__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_13_rnaseq_utils_RNAseqMapping[] = {
  {(char *)"chrom", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_chrom, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_chrom, (char *)0, 0},
  {(char *)"source", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_source, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_source, (char *)0, 0},
  {(char *)"strand", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_strand, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_strand, (char *)0, 0},
  {(char *)"s_len", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_s_len, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_s_len, (char *)0, 0},
  {(char *)"e_len", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_e_len, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_e_len, (char *)0, 0},
  {(char *)"ranges", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_ranges, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_ranges, (char *)0, 0},
  {(char *)"splice", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_splice, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_splice, (char *)0, 0},
  {(char *)"s_tag", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_s_tag, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_s_tag, (char *)0, 0},
  {(char *)"e_tag", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_e_tag, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_e_tag, (char *)0, 0},
  {(char *)"capped", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_capped, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_capped, (char *)0, 0},
  {(char *)"complete", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_complete, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_complete, (char *)0, 0},
  {(char *)"is_reference", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_is_reference, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_is_reference, (char *)0, 0},
  {(char *)"condensed", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_condensed, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_condensed, (char *)0, 0},
  {(char *)"attributes", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_attributes, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_attributes, (char *)0, 0},
  {(char *)"span", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_span, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_span, (char *)0, 0},
  {(char *)"weight", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_weight, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_weight, (char *)0, 0},
  {(char *)"coverage", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_coverage, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_coverage, (char *)0, 0},
  {(char *)"tripleweight", __pyx_getprop_13_rnaseq_utils_13RNAseqMapping_tripleweight, __pyx_setprop_13_rnaseq_utils_13RNAseqMapping_tripleweight, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PySequenceMethods __pyx_tp_as_sequence_RNAseqMapping = {
  __pyx_pw_13_rnaseq_utils_13RNAseqMapping_17__len__, /*sq_length*/
  0, /*sq_concat*/
  0, /*sq_repeat*/
  0, /*sq_item*/
  0, /*sq_slice*/
  0, /*sq_ass_item*/
  0, /*sq_ass_slice*/
  0, /*sq_contains*/
  0, /*sq_inplace_concat*/
  0, /*sq_inplace_repeat*/
};

static PyMappingMethods __pyx_tp_as_mapping_RNAseqMapping = {
  __pyx_pw_13_rnaseq_utils_13RNAseqMapping_17__len__, /*mp_length*/
  0, /*mp_subscript*/
  0, /*mp_ass_subscript*/
};

static PyTypeObject __pyx_type_13_rnaseq_utils_RNAseqMapping = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rnaseq_utils.RNAseqMapping", /*tp_name*/
  sizeof(struct __pyx_obj_13_rnaseq_utils_RNAseqMapping), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_13_rnaseq_utils_RNAseqMapping, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  __pyx_pw_13_rnaseq_utils_13RNAseqMapping_15__repr__, /*tp_repr*/
  0, /*tp_as_number*/
  &__pyx_tp_as_sequence_RNAseqMapping, /*tp_as_sequence*/
  &__pyx_tp_as_mapping_RNAseqMapping, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_13_rnaseq_utils_RNAseqMapping, /*tp_traverse*/
  __pyx_tp_clear_13_rnaseq_utils_RNAseqMapping, /*tp_clear*/
  __pyx_tp_richcompare_13_rnaseq_utils_RNAseqMapping, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_13_rnaseq_utils_RNAseqMapping, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_13_rnaseq_utils_RNAseqMapping, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_13_rnaseq_utils_13RNAseqMapping_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_13_rnaseq_utils_RNAseqMapping, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct_13_rnaseq_utils_RNAseqDataset __pyx_vtable_13_rnaseq_utils_RNAseqDataset;

static PyObject *__pyx_tp_new_13_rnaseq_utils_RNAseqDataset(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *)o);
  p->__pyx_vtab = __pyx_vtabptr_13_rnaseq_utils_RNAseqDataset;
  p->read_list = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->chrom_array = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->source_array = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->chrom_lengths = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->chrom_dict = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->source_dict = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->reference_dict = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->gtf_config = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->gff_config = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->config = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->genome = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->label_tally = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->start_seq = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->end_seq = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->start_seq_rc = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->end_seq_rc = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->gene_delim = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->start_array = ((arrayobject *)Py_None); Py_INCREF(Py_None);
  p->end_array = ((arrayobject *)Py_None); Py_INCREF(Py_None);
  p->sj_set = ((PyObject*)Py_None); Py_INCREF(Py_None);
  return o;
}

static void __pyx_tp_dealloc_13_rnaseq_utils_RNAseqDataset(PyObject *o) {
  struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *p = (struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  Py_CLEAR(p->read_list);
  Py_CLEAR(p->chrom_array);
  Py_CLEAR(p->source_array);
  Py_CLEAR(p->chrom_lengths);
  Py_CLEAR(p->chrom_dict);
  Py_CLEAR(p->source_dict);
  Py_CLEAR(p->reference_dict);
  Py_CLEAR(p->gtf_config);
  Py_CLEAR(p->gff_config);
  Py_CLEAR(p->config);
  Py_CLEAR(p->genome);
  Py_CLEAR(p->label_tally);
  Py_CLEAR(p->start_seq);
  Py_CLEAR(p->end_seq);
  Py_CLEAR(p->start_seq_rc);
  Py_CLEAR(p->end_seq_rc);
  Py_CLEAR(p->gene_delim);
  Py_CLEAR(p->start_array);
  Py_CLEAR(p->end_array);
  Py_CLEAR(p->sj_set);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_13_rnaseq_utils_RNAseqDataset(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *p = (struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *)o;
  if (p->read_list) {
    e = (*v)(p->read_list, a); if (e) return e;
  }
  if (p->chrom_array) {
    e = (*v)(p->chrom_array, a); if (e) return e;
  }
  if (p->source_array) {
    e = (*v)(p->source_array, a); if (e) return e;
  }
  if (p->chrom_lengths) {
    e = (*v)(p->chrom_lengths, a); if (e) return e;
  }
  if (p->chrom_dict) {
    e = (*v)(p->chrom_dict, a); if (e) return e;
  }
  if (p->source_dict) {
    e = (*v)(p->source_dict, a); if (e) return e;
  }
  if (p->reference_dict) {
    e = (*v)(p->reference_dict, a); if (e) return e;
  }
  if (p->gtf_config) {
    e = (*v)(p->gtf_config, a); if (e) return e;
  }
  if (p->gff_config) {
    e = (*v)(p->gff_config, a); if (e) return e;
  }
  if (p->config) {
    e = (*v)(p->config, a); if (e) return e;
  }
  if (p->genome) {
    e = (*v)(p->genome, a); if (e) return e;
  }
  if (p->label_tally) {
    e = (*v)(p->label_tally, a); if (e) return e;
  }
  if (p->start_array) {
    e = (*v)(((PyObject *)p->start_array), a); if (e) return e;
  }
  if (p->end_array) {
    e = (*v)(((PyObject *)p->end_array), a); if (e) return e;
  }
  if (p->sj_set) {
    e = (*v)(p->sj_set, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_13_rnaseq_utils_RNAseqDataset(PyObject *o) {
  PyObject* tmp;
  struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *p = (struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *)o;
  tmp = ((PyObject*)p->read_list);
  p->read_list = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->chrom_array);
  p->chrom_array = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->source_array);
  p->source_array = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->chrom_lengths);
  p->chrom_lengths = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->chrom_dict);
  p->chrom_dict = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->source_dict);
  p->source_dict = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->reference_dict);
  p->reference_dict = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->gtf_config);
  p->gtf_config = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->gff_config);
  p->gff_config = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->config);
  p->config = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->genome);
  p->genome = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->label_tally);
  p->label_tally = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->start_array);
  p->start_array = ((arrayobject *)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->end_array);
  p->end_array = ((arrayobject *)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->sj_set);
  p->sj_set = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_read_list(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_9read_list_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_read_list(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_9read_list_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_9read_list_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_chrom_array(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_11chrom_array_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_chrom_array(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_11chrom_array_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_11chrom_array_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_source_array(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_12source_array_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_source_array(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_12source_array_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_12source_array_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_chrom_lengths(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_13chrom_lengths_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_chrom_lengths(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_13chrom_lengths_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_13chrom_lengths_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_chrom_index(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_11chrom_index_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_chrom_index(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_11chrom_index_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_source_index(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_12source_index_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_source_index(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_12source_index_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_sj_shift(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_8sj_shift_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_sj_shift(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_8sj_shift_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_max_headclip(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_12max_headclip_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_max_headclip(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_12max_headclip_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_max_intron(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10max_intron_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_max_intron(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10max_intron_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_chrom_dict(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10chrom_dict_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_chrom_dict(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10chrom_dict_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10chrom_dict_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_source_dict(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_11source_dict_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_source_dict(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_11source_dict_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_11source_dict_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_reference_dict(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_14reference_dict_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_reference_dict(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_14reference_dict_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_14reference_dict_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_gtf_config(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10gtf_config_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_gtf_config(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10gtf_config_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10gtf_config_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_gff_config(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10gff_config_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_gff_config(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10gff_config_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10gff_config_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_config(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_6config_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_genome(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_6genome_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_label_tally(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_11label_tally_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_s_tag(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_5s_tag_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_e_tag(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_5e_tag_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_capped(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_6capped_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_stranded(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_8stranded_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_reverse(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_7reverse_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_ignore_ends(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_11ignore_ends_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_remove_noncanonical(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_19remove_noncanonical_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_labels_are_trimmed(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_18labels_are_trimmed_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_quality_filter(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_14quality_filter_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_verbose(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_7verbose_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_secondary(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_9secondary_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_has_genome(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10has_genome_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_remove_gapped_termini(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_21remove_gapped_termini_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_start_seq(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_9start_seq_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_end_seq(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_7end_seq_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_start_seq_rc(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_12start_seq_rc_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_end_seq_rc(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10end_seq_rc_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_gene_delim(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10gene_delim_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_minlen(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_6minlen_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_minlen_strict(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_13minlen_strict_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_minlen_loose(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_12minlen_loose_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_mismatch_rate(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_13mismatch_rate_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_error_rate(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_10error_rate_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_start_array(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_11start_array_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_end_array(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_9end_array_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_13RNAseqDataset_sj_set(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_6sj_set_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_sj_set(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_6sj_set_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_13RNAseqDataset_6sj_set_5__del__(o);
  }
}

static PyMethodDef __pyx_methods_13_rnaseq_utils_RNAseqDataset[] = {
  {"make_sj_set", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_3make_sj_set, METH_O, __pyx_doc_13_rnaseq_utils_13RNAseqDataset_2make_sj_set},
  {"add_source", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_5add_source, METH_O, 0},
  {"add_chrom", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_7add_chrom, METH_O, 0},
  {"add_read_from_BED", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_9add_read_from_BED, METH_VARARGS|METH_KEYWORDS, 0},
  {"add_read", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_11add_read, METH_O, 0},
  {"add_read_from_ELR", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_13add_read_from_ELR, METH_O, 0},
  {"add_read_from_BAM", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_15add_read_from_BAM, METH_O, 0},
  {"pop_read", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_17pop_read, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqDataset_16pop_read},
  {"dump_header", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_19dump_header, METH_NOARGS, __pyx_doc_13_rnaseq_utils_13RNAseqDataset_18dump_header},
  {"import_annotation", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_21import_annotation, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqDataset_20import_annotation},
  {"add_mapping_object", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_23add_mapping_object, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqDataset_22add_mapping_object},
  {"anno_to_mapping_object", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_25anno_to_mapping_object, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13RNAseqDataset_24anno_to_mapping_object},
  {"__reduce_cython__", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_27__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_13_rnaseq_utils_13RNAseqDataset_29__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_13_rnaseq_utils_RNAseqDataset[] = {
  {(char *)"read_list", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_read_list, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_read_list, (char *)0, 0},
  {(char *)"chrom_array", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_chrom_array, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_chrom_array, (char *)0, 0},
  {(char *)"source_array", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_source_array, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_source_array, (char *)0, 0},
  {(char *)"chrom_lengths", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_chrom_lengths, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_chrom_lengths, (char *)0, 0},
  {(char *)"chrom_index", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_chrom_index, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_chrom_index, (char *)0, 0},
  {(char *)"source_index", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_source_index, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_source_index, (char *)0, 0},
  {(char *)"sj_shift", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_sj_shift, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_sj_shift, (char *)0, 0},
  {(char *)"max_headclip", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_max_headclip, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_max_headclip, (char *)0, 0},
  {(char *)"max_intron", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_max_intron, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_max_intron, (char *)0, 0},
  {(char *)"chrom_dict", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_chrom_dict, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_chrom_dict, (char *)0, 0},
  {(char *)"source_dict", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_source_dict, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_source_dict, (char *)0, 0},
  {(char *)"reference_dict", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_reference_dict, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_reference_dict, (char *)0, 0},
  {(char *)"gtf_config", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_gtf_config, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_gtf_config, (char *)0, 0},
  {(char *)"gff_config", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_gff_config, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_gff_config, (char *)0, 0},
  {(char *)"config", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_config, 0, (char *)0, 0},
  {(char *)"genome", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_genome, 0, (char *)0, 0},
  {(char *)"label_tally", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_label_tally, 0, (char *)0, 0},
  {(char *)"s_tag", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_s_tag, 0, (char *)0, 0},
  {(char *)"e_tag", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_e_tag, 0, (char *)0, 0},
  {(char *)"capped", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_capped, 0, (char *)0, 0},
  {(char *)"stranded", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_stranded, 0, (char *)0, 0},
  {(char *)"reverse", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_reverse, 0, (char *)0, 0},
  {(char *)"ignore_ends", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_ignore_ends, 0, (char *)0, 0},
  {(char *)"remove_noncanonical", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_remove_noncanonical, 0, (char *)0, 0},
  {(char *)"labels_are_trimmed", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_labels_are_trimmed, 0, (char *)0, 0},
  {(char *)"quality_filter", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_quality_filter, 0, (char *)0, 0},
  {(char *)"verbose", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_verbose, 0, (char *)0, 0},
  {(char *)"secondary", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_secondary, 0, (char *)0, 0},
  {(char *)"has_genome", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_has_genome, 0, (char *)0, 0},
  {(char *)"remove_gapped_termini", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_remove_gapped_termini, 0, (char *)0, 0},
  {(char *)"start_seq", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_start_seq, 0, (char *)0, 0},
  {(char *)"end_seq", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_end_seq, 0, (char *)0, 0},
  {(char *)"start_seq_rc", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_start_seq_rc, 0, (char *)0, 0},
  {(char *)"end_seq_rc", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_end_seq_rc, 0, (char *)0, 0},
  {(char *)"gene_delim", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_gene_delim, 0, (char *)0, 0},
  {(char *)"minlen", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_minlen, 0, (char *)0, 0},
  {(char *)"minlen_strict", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_minlen_strict, 0, (char *)0, 0},
  {(char *)"minlen_loose", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_minlen_loose, 0, (char *)0, 0},
  {(char *)"mismatch_rate", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_mismatch_rate, 0, (char *)0, 0},
  {(char *)"error_rate", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_error_rate, 0, (char *)0, 0},
  {(char *)"start_array", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_start_array, 0, (char *)0, 0},
  {(char *)"end_array", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_end_array, 0, (char *)0, 0},
  {(char *)"sj_set", __pyx_getprop_13_rnaseq_utils_13RNAseqDataset_sj_set, __pyx_setprop_13_rnaseq_utils_13RNAseqDataset_sj_set, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PyTypeObject __pyx_type_13_rnaseq_utils_RNAseqDataset = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rnaseq_utils.RNAseqDataset", /*tp_name*/
  sizeof(struct __pyx_obj_13_rnaseq_utils_RNAseqDataset), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_13_rnaseq_utils_RNAseqDataset, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_13_rnaseq_utils_RNAseqDataset, /*tp_traverse*/
  __pyx_tp_clear_13_rnaseq_utils_RNAseqDataset, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_13_rnaseq_utils_RNAseqDataset, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_13_rnaseq_utils_RNAseqDataset, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_13_rnaseq_utils_13RNAseqDataset_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_13_rnaseq_utils_RNAseqDataset, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct_13_rnaseq_utils_AnnotationObject __pyx_vtable_13_rnaseq_utils_AnnotationObject;

static PyObject *__pyx_tp_new_13_rnaseq_utils_AnnotationObject(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_obj_13_rnaseq_utils_AnnotationObject *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_obj_13_rnaseq_utils_AnnotationObject *)o);
  p->__pyx_vtab = __pyx_vtabptr_13_rnaseq_utils_AnnotationObject;
  p->attributes = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->format = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->gene_id = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->transcript_id = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->chrom = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->source = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->anno_type = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->fields = ((PyObject*)Py_None); Py_INCREF(Py_None);
  return o;
}

static void __pyx_tp_dealloc_13_rnaseq_utils_AnnotationObject(PyObject *o) {
  struct __pyx_obj_13_rnaseq_utils_AnnotationObject *p = (struct __pyx_obj_13_rnaseq_utils_AnnotationObject *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  Py_CLEAR(p->attributes);
  Py_CLEAR(p->format);
  Py_CLEAR(p->gene_id);
  Py_CLEAR(p->transcript_id);
  Py_CLEAR(p->chrom);
  Py_CLEAR(p->source);
  Py_CLEAR(p->anno_type);
  Py_CLEAR(p->fields);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_13_rnaseq_utils_AnnotationObject(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_obj_13_rnaseq_utils_AnnotationObject *p = (struct __pyx_obj_13_rnaseq_utils_AnnotationObject *)o;
  if (p->attributes) {
    e = (*v)(p->attributes, a); if (e) return e;
  }
  if (p->fields) {
    e = (*v)(p->fields, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_13_rnaseq_utils_AnnotationObject(PyObject *o) {
  PyObject* tmp;
  struct __pyx_obj_13_rnaseq_utils_AnnotationObject *p = (struct __pyx_obj_13_rnaseq_utils_AnnotationObject *)o;
  tmp = ((PyObject*)p->attributes);
  p->attributes = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->fields);
  p->fields = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyObject *__pyx_tp_richcompare_13_rnaseq_utils_AnnotationObject(PyObject *o1, PyObject *o2, int op) {
  switch (op) {
    case Py_EQ: {
      return __pyx_pw_13_rnaseq_utils_16AnnotationObject_5__eq__(o1, o2);
    }
    case Py_NE: {
      return __pyx_pw_13_rnaseq_utils_16AnnotationObject_7__ne__(o1, o2);
    }
    case Py_LT: {
      return __pyx_pw_13_rnaseq_utils_16AnnotationObject_13__lt__(o1, o2);
    }
    case Py_GT: {
      return __pyx_pw_13_rnaseq_utils_16AnnotationObject_9__gt__(o1, o2);
    }
    case Py_LE: {
      return __pyx_pw_13_rnaseq_utils_16AnnotationObject_15__le__(o1, o2);
    }
    case Py_GE: {
      return __pyx_pw_13_rnaseq_utils_16AnnotationObject_11__ge__(o1, o2);
    }
    default: {
      return __Pyx_NewRef(Py_NotImplemented);
    }
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_attributes(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_10attributes_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_attributes(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_10attributes_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_10attributes_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_keep(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_4keep_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_keep(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_4keep_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_parent(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6parent_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_parent(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6parent_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_format(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6format_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_format(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6format_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6format_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_gene_id(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_7gene_id_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_gene_id(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_7gene_id_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_7gene_id_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_transcript_id(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_13transcript_id_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_transcript_id(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_13transcript_id_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_13transcript_id_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_chrom(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_5chrom_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_chrom(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_5chrom_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_5chrom_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_source(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6source_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_source(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6source_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6source_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_anno_type(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_9anno_type_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_anno_type(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_9anno_type_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_9anno_type_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_strand(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6strand_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_strand(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6strand_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_span(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_4span_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_span(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_4span_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_16AnnotationObject_fields(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6fields_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_16AnnotationObject_fields(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6fields_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_16AnnotationObject_6fields_5__del__(o);
  }
}

static PyMethodDef __pyx_methods_13_rnaseq_utils_AnnotationObject[] = {
  {"parse_attributes", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_16AnnotationObject_3parse_attributes, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_16AnnotationObject_2parse_attributes},
  {"__reduce_cython__", (PyCFunction)__pyx_pw_13_rnaseq_utils_16AnnotationObject_17__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_13_rnaseq_utils_16AnnotationObject_19__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_13_rnaseq_utils_AnnotationObject[] = {
  {(char *)"attributes", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_attributes, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_attributes, (char *)0, 0},
  {(char *)"keep", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_keep, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_keep, (char *)0, 0},
  {(char *)"parent", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_parent, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_parent, (char *)0, 0},
  {(char *)"format", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_format, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_format, (char *)0, 0},
  {(char *)"gene_id", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_gene_id, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_gene_id, (char *)0, 0},
  {(char *)"transcript_id", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_transcript_id, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_transcript_id, (char *)0, 0},
  {(char *)"chrom", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_chrom, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_chrom, (char *)0, 0},
  {(char *)"source", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_source, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_source, (char *)0, 0},
  {(char *)"anno_type", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_anno_type, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_anno_type, (char *)0, 0},
  {(char *)"strand", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_strand, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_strand, (char *)0, 0},
  {(char *)"span", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_span, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_span, (char *)0, 0},
  {(char *)"fields", __pyx_getprop_13_rnaseq_utils_16AnnotationObject_fields, __pyx_setprop_13_rnaseq_utils_16AnnotationObject_fields, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PyTypeObject __pyx_type_13_rnaseq_utils_AnnotationObject = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rnaseq_utils.AnnotationObject", /*tp_name*/
  sizeof(struct __pyx_obj_13_rnaseq_utils_AnnotationObject), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_13_rnaseq_utils_AnnotationObject, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_13_rnaseq_utils_AnnotationObject, /*tp_traverse*/
  __pyx_tp_clear_13_rnaseq_utils_AnnotationObject, /*tp_clear*/
  __pyx_tp_richcompare_13_rnaseq_utils_AnnotationObject, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_13_rnaseq_utils_AnnotationObject, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_13_rnaseq_utils_AnnotationObject, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_13_rnaseq_utils_16AnnotationObject_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_13_rnaseq_utils_AnnotationObject, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct_13_rnaseq_utils_AnnotationDataset __pyx_vtable_13_rnaseq_utils_AnnotationDataset;

static PyObject *__pyx_tp_new_13_rnaseq_utils_AnnotationDataset(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *p;
  PyObject *o = __pyx_tp_new_13_rnaseq_utils_RNAseqDataset(t, a, k);
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *)o);
  p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_13_rnaseq_utils_RNAseqDataset*)__pyx_vtabptr_13_rnaseq_utils_AnnotationDataset;
  p->annotations = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->generator = Py_None; Py_INCREF(Py_None);
  return o;
}

static void __pyx_tp_dealloc_13_rnaseq_utils_AnnotationDataset(PyObject *o) {
  struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *p = (struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  Py_CLEAR(p->annotations);
  Py_CLEAR(p->generator);
  PyObject_GC_Track(o);
  __pyx_tp_dealloc_13_rnaseq_utils_RNAseqDataset(o);
}

static int __pyx_tp_traverse_13_rnaseq_utils_AnnotationDataset(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *p = (struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *)o;
  e = __pyx_tp_traverse_13_rnaseq_utils_RNAseqDataset(o, v, a); if (e) return e;
  if (p->annotations) {
    e = (*v)(p->annotations, a); if (e) return e;
  }
  if (p->generator) {
    e = (*v)(p->generator, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_13_rnaseq_utils_AnnotationDataset(PyObject *o) {
  PyObject* tmp;
  struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *p = (struct __pyx_obj_13_rnaseq_utils_AnnotationDataset *)o;
  __pyx_tp_clear_13_rnaseq_utils_RNAseqDataset(o);
  tmp = ((PyObject*)p->annotations);
  p->annotations = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->generator);
  p->generator = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyObject *__pyx_getprop_13_rnaseq_utils_17AnnotationDataset_annotations(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_11annotations_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_annotations(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_11annotations_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_11annotations_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_17AnnotationDataset_generator(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_9generator_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_generator(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_9generator_3__set__(o, v);
  }
  else {
    return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_9generator_5__del__(o);
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_17AnnotationDataset_number_of_assemblies(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_20number_of_assemblies_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_number_of_assemblies(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_20number_of_assemblies_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_17AnnotationDataset_counter(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_7counter_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_counter(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_7counter_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_17AnnotationDataset_min_reps(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_8min_reps_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_min_reps(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_8min_reps_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_17AnnotationDataset_confidence(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_10confidence_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_confidence(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_10confidence_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_13_rnaseq_utils_17AnnotationDataset_cap_bonus(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_9cap_bonus_1__get__(o);
}

static int __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_cap_bonus(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_13_rnaseq_utils_17AnnotationDataset_9cap_bonus_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyMethodDef __pyx_methods_13_rnaseq_utils_AnnotationDataset[] = {
  {"get_transcript_fasta", (PyCFunction)__pyx_pw_13_rnaseq_utils_17AnnotationDataset_3get_transcript_fasta, METH_O, __pyx_doc_13_rnaseq_utils_17AnnotationDataset_2get_transcript_fasta},
  {"merge_children", (PyCFunction)__pyx_pw_13_rnaseq_utils_17AnnotationDataset_5merge_children, METH_O, __pyx_doc_13_rnaseq_utils_17AnnotationDataset_4merge_children},
  {"generate_loci", (PyCFunction)__pyx_pw_13_rnaseq_utils_17AnnotationDataset_7generate_loci, METH_NOARGS, __pyx_doc_13_rnaseq_utils_17AnnotationDataset_6generate_loci},
  {"__reduce_cython__", (PyCFunction)__pyx_pw_13_rnaseq_utils_17AnnotationDataset_10__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_13_rnaseq_utils_17AnnotationDataset_12__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_13_rnaseq_utils_AnnotationDataset[] = {
  {(char *)"annotations", __pyx_getprop_13_rnaseq_utils_17AnnotationDataset_annotations, __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_annotations, (char *)0, 0},
  {(char *)"generator", __pyx_getprop_13_rnaseq_utils_17AnnotationDataset_generator, __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_generator, (char *)0, 0},
  {(char *)"number_of_assemblies", __pyx_getprop_13_rnaseq_utils_17AnnotationDataset_number_of_assemblies, __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_number_of_assemblies, (char *)0, 0},
  {(char *)"counter", __pyx_getprop_13_rnaseq_utils_17AnnotationDataset_counter, __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_counter, (char *)0, 0},
  {(char *)"min_reps", __pyx_getprop_13_rnaseq_utils_17AnnotationDataset_min_reps, __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_min_reps, (char *)0, 0},
  {(char *)"confidence", __pyx_getprop_13_rnaseq_utils_17AnnotationDataset_confidence, __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_confidence, (char *)0, 0},
  {(char *)"cap_bonus", __pyx_getprop_13_rnaseq_utils_17AnnotationDataset_cap_bonus, __pyx_setprop_13_rnaseq_utils_17AnnotationDataset_cap_bonus, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PyTypeObject __pyx_type_13_rnaseq_utils_AnnotationDataset = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rnaseq_utils.AnnotationDataset", /*tp_name*/
  sizeof(struct __pyx_obj_13_rnaseq_utils_AnnotationDataset), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_13_rnaseq_utils_AnnotationDataset, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
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  0, /*tp_as_mapping*/
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  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
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  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  "Child of an RNAseqDataset. Parses a set of input annotations (GFF3/GTF/BED12/ELR).\n    Has methods that allow these annotations to be merged together to\n    form a single consensus or to be merged directly into a 'reference' annotation.", /*tp_doc*/
  __pyx_tp_traverse_13_rnaseq_utils_AnnotationDataset, /*tp_traverse*/
  __pyx_tp_clear_13_rnaseq_utils_AnnotationDataset, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_13_rnaseq_utils_AnnotationDataset, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_13_rnaseq_utils_AnnotationDataset, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_13_rnaseq_utils_17AnnotationDataset_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_13_rnaseq_utils_AnnotationDataset, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct_13_rnaseq_utils_BAMobject __pyx_vtable_13_rnaseq_utils_BAMobject;

static PyObject *__pyx_tp_new_13_rnaseq_utils_BAMobject(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_obj_13_rnaseq_utils_BAMobject *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_obj_13_rnaseq_utils_BAMobject *)o);
  p->__pyx_vtab = __pyx_vtabptr_13_rnaseq_utils_BAMobject;
  p->dataset = ((struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *)Py_None); Py_INCREF(Py_None);
  p->input_lines = ((PyObject*)Py_None); Py_INCREF(Py_None);
  return o;
}

static void __pyx_tp_dealloc_13_rnaseq_utils_BAMobject(PyObject *o) {
  struct __pyx_obj_13_rnaseq_utils_BAMobject *p = (struct __pyx_obj_13_rnaseq_utils_BAMobject *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  Py_CLEAR(p->dataset);
  Py_CLEAR(p->input_lines);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_13_rnaseq_utils_BAMobject(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_obj_13_rnaseq_utils_BAMobject *p = (struct __pyx_obj_13_rnaseq_utils_BAMobject *)o;
  if (p->dataset) {
    e = (*v)(((PyObject *)p->dataset), a); if (e) return e;
  }
  if (p->input_lines) {
    e = (*v)(p->input_lines, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_13_rnaseq_utils_BAMobject(PyObject *o) {
  PyObject* tmp;
  struct __pyx_obj_13_rnaseq_utils_BAMobject *p = (struct __pyx_obj_13_rnaseq_utils_BAMobject *)o;
  tmp = ((PyObject*)p->dataset);
  p->dataset = ((struct __pyx_obj_13_rnaseq_utils_RNAseqDataset *)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->input_lines);
  p->input_lines = ((PyObject*)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyObject *__pyx_getprop_13_rnaseq_utils_9BAMobject_dataset(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_9BAMobject_7dataset_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_9BAMobject_input_lines(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_9BAMobject_11input_lines_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_9BAMobject_error_rate(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_9BAMobject_10error_rate_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_9BAMobject_ignore_ends(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_9BAMobject_11ignore_ends_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_9BAMobject_secondary(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_9BAMobject_9secondary_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_9BAMobject_remove_noncanonical(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_9BAMobject_19remove_noncanonical_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_9BAMobject_remove_gapped_termini(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_9BAMobject_21remove_gapped_termini_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_9BAMobject_quality_filter(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_9BAMobject_14quality_filter_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_9BAMobject_max_headclip(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_9BAMobject_12max_headclip_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_9BAMobject_sj_shift(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_9BAMobject_8sj_shift_1__get__(o);
}

static PyObject *__pyx_getprop_13_rnaseq_utils_9BAMobject_max_intron(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_13_rnaseq_utils_9BAMobject_10max_intron_1__get__(o);
}

static PyMethodDef __pyx_methods_13_rnaseq_utils_BAMobject[] = {
  {"generate_read", (PyCFunction)__pyx_pw_13_rnaseq_utils_9BAMobject_3generate_read, METH_NOARGS, 0},
  {"remove_terminal_gaps", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_9BAMobject_5remove_terminal_gaps, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_9BAMobject_4remove_terminal_gaps},
  {"evaluate_splice_sites", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_9BAMobject_7evaluate_splice_sites, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_9BAMobject_6evaluate_splice_sites},
  {"adjust_splice_sites", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_9BAMobject_9adjust_splice_sites, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_9BAMobject_8adjust_splice_sites},
  {"__reduce_cython__", (PyCFunction)__pyx_pw_13_rnaseq_utils_9BAMobject_11__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_13_rnaseq_utils_9BAMobject_13__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_13_rnaseq_utils_BAMobject[] = {
  {(char *)"dataset", __pyx_getprop_13_rnaseq_utils_9BAMobject_dataset, 0, (char *)0, 0},
  {(char *)"input_lines", __pyx_getprop_13_rnaseq_utils_9BAMobject_input_lines, 0, (char *)0, 0},
  {(char *)"error_rate", __pyx_getprop_13_rnaseq_utils_9BAMobject_error_rate, 0, (char *)0, 0},
  {(char *)"ignore_ends", __pyx_getprop_13_rnaseq_utils_9BAMobject_ignore_ends, 0, (char *)0, 0},
  {(char *)"secondary", __pyx_getprop_13_rnaseq_utils_9BAMobject_secondary, 0, (char *)0, 0},
  {(char *)"remove_noncanonical", __pyx_getprop_13_rnaseq_utils_9BAMobject_remove_noncanonical, 0, (char *)0, 0},
  {(char *)"remove_gapped_termini", __pyx_getprop_13_rnaseq_utils_9BAMobject_remove_gapped_termini, 0, (char *)0, 0},
  {(char *)"quality_filter", __pyx_getprop_13_rnaseq_utils_9BAMobject_quality_filter, 0, (char *)0, 0},
  {(char *)"max_headclip", __pyx_getprop_13_rnaseq_utils_9BAMobject_max_headclip, 0, (char *)0, 0},
  {(char *)"sj_shift", __pyx_getprop_13_rnaseq_utils_9BAMobject_sj_shift, 0, (char *)0, 0},
  {(char *)"max_intron", __pyx_getprop_13_rnaseq_utils_9BAMobject_max_intron, 0, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PyTypeObject __pyx_type_13_rnaseq_utils_BAMobject = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rnaseq_utils.BAMobject", /*tp_name*/
  sizeof(struct __pyx_obj_13_rnaseq_utils_BAMobject), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_13_rnaseq_utils_BAMobject, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
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  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_13_rnaseq_utils_BAMobject, /*tp_traverse*/
  __pyx_tp_clear_13_rnaseq_utils_BAMobject, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_13_rnaseq_utils_BAMobject, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_13_rnaseq_utils_BAMobject, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_13_rnaseq_utils_9BAMobject_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_13_rnaseq_utils_BAMobject, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
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  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
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  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
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};

static struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct____init__ *__pyx_freelist_13_rnaseq_utils___pyx_scope_struct____init__[8];
static int __pyx_freecount_13_rnaseq_utils___pyx_scope_struct____init__ = 0;

static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct____init__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  PyObject *o;
  if (CYTHON_COMPILING_IN_CPYTHON && likely((__pyx_freecount_13_rnaseq_utils___pyx_scope_struct____init__ > 0) & (t->tp_basicsize == sizeof(struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct____init__)))) {
    o = (PyObject*)__pyx_freelist_13_rnaseq_utils___pyx_scope_struct____init__[--__pyx_freecount_13_rnaseq_utils___pyx_scope_struct____init__];
    memset(o, 0, sizeof(struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct____init__));
    (void) PyObject_INIT(o, t);
    PyObject_GC_Track(o);
  } else {
    o = (*t->tp_alloc)(t, 0);
    if (unlikely(!o)) return 0;
  }
  return o;
}

static void __pyx_tp_dealloc_13_rnaseq_utils___pyx_scope_struct____init__(PyObject *o) {
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  PyObject_GC_UnTrack(o);
  Py_CLEAR(p->__pyx_v_input_data);
  if (CYTHON_COMPILING_IN_CPYTHON && ((__pyx_freecount_13_rnaseq_utils___pyx_scope_struct____init__ < 8) & (Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct____init__)))) {
    __pyx_freelist_13_rnaseq_utils___pyx_scope_struct____init__[__pyx_freecount_13_rnaseq_utils___pyx_scope_struct____init__++] = ((struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct____init__ *)o);
  } else {
    (*Py_TYPE(o)->tp_free)(o);
  }
}

static int __pyx_tp_traverse_13_rnaseq_utils___pyx_scope_struct____init__(PyObject *o, visitproc v, void *a) {
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  if (p->__pyx_v_input_data) {
    e = (*v)(p->__pyx_v_input_data, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_13_rnaseq_utils___pyx_scope_struct____init__(PyObject *o) {
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  tmp = ((PyObject*)p->__pyx_v_input_data);
  p->__pyx_v_input_data = Py_None; Py_INCREF(Py_None);
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}

static PyTypeObject __pyx_type_13_rnaseq_utils___pyx_scope_struct____init__ = {
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static struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_1_genexpr *__pyx_freelist_13_rnaseq_utils___pyx_scope_struct_1_genexpr[8];
static int __pyx_freecount_13_rnaseq_utils___pyx_scope_struct_1_genexpr = 0;

static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_1_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
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    o = (PyObject*)__pyx_freelist_13_rnaseq_utils___pyx_scope_struct_1_genexpr[--__pyx_freecount_13_rnaseq_utils___pyx_scope_struct_1_genexpr];
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    o = (*t->tp_alloc)(t, 0);
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static void __pyx_tp_dealloc_13_rnaseq_utils___pyx_scope_struct_1_genexpr(PyObject *o) {
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    __pyx_freelist_13_rnaseq_utils___pyx_scope_struct_1_genexpr[__pyx_freecount_13_rnaseq_utils___pyx_scope_struct_1_genexpr++] = ((struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_1_genexpr *)o);
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    (*Py_TYPE(o)->tp_free)(o);
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}

static int __pyx_tp_traverse_13_rnaseq_utils___pyx_scope_struct_1_genexpr(PyObject *o, visitproc v, void *a) {
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  }
  if (p->__pyx_v_s) {
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  }
  if (p->__pyx_t_0) {
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  }
  return 0;
}

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static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_2_generate_loci(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
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    (void) PyObject_INIT(o, t);
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  } else {
    o = (*t->tp_alloc)(t, 0);
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static void __pyx_tp_dealloc_13_rnaseq_utils___pyx_scope_struct_2_generate_loci(PyObject *o) {
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  Py_CLEAR(p->__pyx_v_chrom_annotation_list);
  Py_CLEAR(p->__pyx_v_current_chunk);
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  Py_CLEAR(p->__pyx_v_k);
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    __pyx_freelist_13_rnaseq_utils___pyx_scope_struct_2_generate_loci[__pyx_freecount_13_rnaseq_utils___pyx_scope_struct_2_generate_loci++] = ((struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_2_generate_loci *)o);
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static int __pyx_tp_traverse_13_rnaseq_utils___pyx_scope_struct_2_generate_loci(PyObject *o, visitproc v, void *a) {
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  return 0;
}

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static int __pyx_freecount_13_rnaseq_utils___pyx_scope_struct_3_array_to_blocks = 0;

static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_3_array_to_blocks(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
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static void __pyx_tp_dealloc_13_rnaseq_utils___pyx_scope_struct_3_array_to_blocks(PyObject *o) {
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static int __pyx_tp_traverse_13_rnaseq_utils___pyx_scope_struct_3_array_to_blocks(PyObject *o, visitproc v, void *a) {
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static struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string *__pyx_freelist_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string[8];
static int __pyx_freecount_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string = 0;

static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
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  if (CYTHON_COMPILING_IN_CPYTHON && likely((__pyx_freecount_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string > 0) & (t->tp_basicsize == sizeof(struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string)))) {
    o = (PyObject*)__pyx_freelist_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string[--__pyx_freecount_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string];
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    (void) PyObject_INIT(o, t);
  } else {
    o = (*t->tp_alloc)(t, 0);
    if (unlikely(!o)) return 0;
  }
  return o;
}

static void __pyx_tp_dealloc_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string(PyObject *o) {
  struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string *p = (struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string *)o;
  Py_CLEAR(p->__pyx_v_c);
  Py_CLEAR(p->__pyx_v_current);
  Py_CLEAR(p->__pyx_v_mdstring);
  Py_CLEAR(p->__pyx_t_0);
  if (CYTHON_COMPILING_IN_CPYTHON && ((__pyx_freecount_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string < 8) & (Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string)))) {
    __pyx_freelist_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string[__pyx_freecount_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string++] = ((struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string *)o);
  } else {
    (*Py_TYPE(o)->tp_free)(o);
  }
}

static PyTypeObject __pyx_type_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string = {
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  __pyx_tp_dealloc_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string, /*tp_dealloc*/
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  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/
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  __pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_4_parse_MD_string, /*tp_new*/
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  0, /*tp_pypy_flags*/
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static struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_5_read_generator *__pyx_freelist_13_rnaseq_utils___pyx_scope_struct_5_read_generator[8];
static int __pyx_freecount_13_rnaseq_utils___pyx_scope_struct_5_read_generator = 0;

static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_5_read_generator(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
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    o = (PyObject*)__pyx_freelist_13_rnaseq_utils___pyx_scope_struct_5_read_generator[--__pyx_freecount_13_rnaseq_utils___pyx_scope_struct_5_read_generator];
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    (void) PyObject_INIT(o, t);
    PyObject_GC_Track(o);
  } else {
    o = (*t->tp_alloc)(t, 0);
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}

static void __pyx_tp_dealloc_13_rnaseq_utils___pyx_scope_struct_5_read_generator(PyObject *o) {
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  Py_CLEAR(p->__pyx_v_add_read);
  Py_CLEAR(p->__pyx_v_covered_positions);
  Py_CLEAR(p->__pyx_v_dataset);
  Py_CLEAR(p->__pyx_v_end_positions);
  Py_CLEAR(p->__pyx_v_file_type);
  Py_CLEAR(p->__pyx_v_fileconn);
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  Py_CLEAR(p->__pyx_v_line);
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  Py_CLEAR(p->__pyx_9genexpr53__pyx_v_outread);
  Py_CLEAR(p->__pyx_v_outread);
  Py_CLEAR(p->__pyx_v_passed_positions);
  Py_CLEAR(p->__pyx_v_read);
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    __pyx_freelist_13_rnaseq_utils___pyx_scope_struct_5_read_generator[__pyx_freecount_13_rnaseq_utils___pyx_scope_struct_5_read_generator++] = ((struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_5_read_generator *)o);
  } else {
    (*Py_TYPE(o)->tp_free)(o);
  }
}

static int __pyx_tp_traverse_13_rnaseq_utils___pyx_scope_struct_5_read_generator(PyObject *o, visitproc v, void *a) {
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    e = (*v)(p->__pyx_v_add_read, a); if (e) return e;
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    e = (*v)(p->__pyx_v_covered_positions, a); if (e) return e;
  }
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    e = (*v)(((PyObject *)p->__pyx_v_dataset), a); if (e) return e;
  }
  if (p->__pyx_v_end_positions) {
    e = (*v)(p->__pyx_v_end_positions, a); if (e) return e;
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  }
  return 0;
}

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  0, /*tp_print*/
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static struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks *__pyx_freelist_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks[8];
static int __pyx_freecount_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks = 0;

static PyObject *__pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  PyObject *o;
  if (CYTHON_COMPILING_IN_CPYTHON && likely((__pyx_freecount_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks > 0) & (t->tp_basicsize == sizeof(struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks)))) {
    o = (PyObject*)__pyx_freelist_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks[--__pyx_freecount_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks];
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    (void) PyObject_INIT(o, t);
    PyObject_GC_Track(o);
  } else {
    o = (*t->tp_alloc)(t, 0);
    if (unlikely(!o)) return 0;
  }
  return o;
}

static void __pyx_tp_dealloc_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks(PyObject *o) {
  struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks *p = (struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks *)o;
  PyObject_GC_UnTrack(o);
  Py_CLEAR(p->__pyx_v_ignore);
  Py_CLEAR(p->__pyx_v_list_of_reads);
  Py_CLEAR(p->__pyx_v_position);
  Py_CLEAR(p->__pyx_v_read);
  Py_CLEAR(p->__pyx_v_split_positions);
  Py_CLEAR(p->__pyx_t_0);
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  } else {
    (*Py_TYPE(o)->tp_free)(o);
  }
}

static int __pyx_tp_traverse_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks(PyObject *o, visitproc v, void *a) {
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  }
  return 0;
}

static PyTypeObject __pyx_type_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks = {
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  "_rnaseq_utils.__pyx_scope_struct_6_generate_subchunks", /*tp_name*/
  sizeof(struct __pyx_obj_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks), /*tp_basicsize*/
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  __pyx_tp_dealloc_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
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  0, /*tp_getattr*/
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  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks, /*tp_traverse*/
  0, /*tp_clear*/
  0, /*tp_richcompare*/
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  0, /*tp_iternext*/
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  __pyx_tp_new_13_rnaseq_utils___pyx_scope_struct_6_generate_subchunks, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
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  0, /*tp_subclasses*/
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  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
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  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
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  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
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static PyObject *__pyx_tp_new_array(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_array_obj *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_array_obj *)o);
  p->__pyx_vtab = __pyx_vtabptr_array;
  p->mode = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->_format = ((PyObject*)Py_None); Py_INCREF(Py_None);
  if (unlikely(__pyx_array___cinit__(o, a, k) < 0)) goto bad;
  return o;
  bad:
  Py_DECREF(o); o = 0;
  return NULL;
}

static void __pyx_tp_dealloc_array(PyObject *o) {
  struct __pyx_array_obj *p = (struct __pyx_array_obj *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  {
    PyObject *etype, *eval, *etb;
    PyErr_Fetch(&etype, &eval, &etb);
    __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1);
    __pyx_array___dealloc__(o);
    __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1);
    PyErr_Restore(etype, eval, etb);
  }
  Py_CLEAR(p->mode);
  Py_CLEAR(p->_format);
  (*Py_TYPE(o)->tp_free)(o);
}
static PyObject *__pyx_sq_item_array(PyObject *o, Py_ssize_t i) {
  PyObject *r;
  PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
  r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
  Py_DECREF(x);
  return r;
}

static int __pyx_mp_ass_subscript_array(PyObject *o, PyObject *i, PyObject *v) {
  if (v) {
    return __pyx_array___setitem__(o, i, v);
  }
  else {
    PyErr_Format(PyExc_NotImplementedError,
      "Subscript deletion not supported by %.200s", Py_TYPE(o)->tp_name);
    return -1;
  }
}

static PyObject *__pyx_tp_getattro_array(PyObject *o, PyObject *n) {
  PyObject *v = __Pyx_PyObject_GenericGetAttr(o, n);
  if (!v && PyErr_ExceptionMatches(PyExc_AttributeError)) {
    PyErr_Clear();
    v = __pyx_array___getattr__(o, n);
  }
  return v;
}

static PyObject *__pyx_getprop___pyx_array_memview(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_5array_7memview_1__get__(o);
}

static PyMethodDef __pyx_methods_array[] = {
  {"__getattr__", (PyCFunction)__pyx_array___getattr__, METH_O|METH_COEXIST, 0},
  {"__reduce_cython__", (PyCFunction)__pyx_pw___pyx_array_1__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw___pyx_array_3__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_array[] = {
  {(char *)"memview", __pyx_getprop___pyx_array_memview, 0, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PySequenceMethods __pyx_tp_as_sequence_array = {
  __pyx_array___len__, /*sq_length*/
  0, /*sq_concat*/
  0, /*sq_repeat*/
  __pyx_sq_item_array, /*sq_item*/
  0, /*sq_slice*/
  0, /*sq_ass_item*/
  0, /*sq_ass_slice*/
  0, /*sq_contains*/
  0, /*sq_inplace_concat*/
  0, /*sq_inplace_repeat*/
};

static PyMappingMethods __pyx_tp_as_mapping_array = {
  __pyx_array___len__, /*mp_length*/
  __pyx_array___getitem__, /*mp_subscript*/
  __pyx_mp_ass_subscript_array, /*mp_ass_subscript*/
};

static PyBufferProcs __pyx_tp_as_buffer_array = {
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getreadbuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getwritebuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getsegcount*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getcharbuffer*/
  #endif
  __pyx_array_getbuffer, /*bf_getbuffer*/
  0, /*bf_releasebuffer*/
};

static PyTypeObject __pyx_type___pyx_array = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rnaseq_utils.array", /*tp_name*/
  sizeof(struct __pyx_array_obj), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_array, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  &__pyx_tp_as_sequence_array, /*tp_as_sequence*/
  &__pyx_tp_as_mapping_array, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  __pyx_tp_getattro_array, /*tp_getattro*/
  0, /*tp_setattro*/
  &__pyx_tp_as_buffer_array, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
  0, /*tp_doc*/
  0, /*tp_traverse*/
  0, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_array, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_array, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  0, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_array, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};

static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_MemviewEnum_obj *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_MemviewEnum_obj *)o);
  p->name = Py_None; Py_INCREF(Py_None);
  return o;
}

static void __pyx_tp_dealloc_Enum(PyObject *o) {
  struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  Py_CLEAR(p->name);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_Enum(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o;
  if (p->name) {
    e = (*v)(p->name, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_Enum(PyObject *o) {
  PyObject* tmp;
  struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o;
  tmp = ((PyObject*)p->name);
  p->name = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyMethodDef __pyx_methods_Enum[] = {
  {"__reduce_cython__", (PyCFunction)__pyx_pw___pyx_MemviewEnum_1__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw___pyx_MemviewEnum_3__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static PyTypeObject __pyx_type___pyx_MemviewEnum = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rnaseq_utils.Enum", /*tp_name*/
  sizeof(struct __pyx_MemviewEnum_obj), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_Enum, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  __pyx_MemviewEnum___repr__, /*tp_repr*/
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_Enum, /*tp_traverse*/
  __pyx_tp_clear_Enum, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_Enum, /*tp_methods*/
  0, /*tp_members*/
  0, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_MemviewEnum___init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_Enum, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct_memoryview __pyx_vtable_memoryview;

static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_memoryview_obj *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_memoryview_obj *)o);
  p->__pyx_vtab = __pyx_vtabptr_memoryview;
  p->obj = Py_None; Py_INCREF(Py_None);
  p->_size = Py_None; Py_INCREF(Py_None);
  p->_array_interface = Py_None; Py_INCREF(Py_None);
  p->view.obj = NULL;
  if (unlikely(__pyx_memoryview___cinit__(o, a, k) < 0)) goto bad;
  return o;
  bad:
  Py_DECREF(o); o = 0;
  return NULL;
}

static void __pyx_tp_dealloc_memoryview(PyObject *o) {
  struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  {
    PyObject *etype, *eval, *etb;
    PyErr_Fetch(&etype, &eval, &etb);
    __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1);
    __pyx_memoryview___dealloc__(o);
    __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1);
    PyErr_Restore(etype, eval, etb);
  }
  Py_CLEAR(p->obj);
  Py_CLEAR(p->_size);
  Py_CLEAR(p->_array_interface);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_memoryview(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o;
  if (p->obj) {
    e = (*v)(p->obj, a); if (e) return e;
  }
  if (p->_size) {
    e = (*v)(p->_size, a); if (e) return e;
  }
  if (p->_array_interface) {
    e = (*v)(p->_array_interface, a); if (e) return e;
  }
  if (p->view.obj) {
    e = (*v)(p->view.obj, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_memoryview(PyObject *o) {
  PyObject* tmp;
  struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o;
  tmp = ((PyObject*)p->obj);
  p->obj = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->_size);
  p->_size = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->_array_interface);
  p->_array_interface = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  Py_CLEAR(p->view.obj);
  return 0;
}
static PyObject *__pyx_sq_item_memoryview(PyObject *o, Py_ssize_t i) {
  PyObject *r;
  PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
  r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
  Py_DECREF(x);
  return r;
}

static int __pyx_mp_ass_subscript_memoryview(PyObject *o, PyObject *i, PyObject *v) {
  if (v) {
    return __pyx_memoryview___setitem__(o, i, v);
  }
  else {
    PyErr_Format(PyExc_NotImplementedError,
      "Subscript deletion not supported by %.200s", Py_TYPE(o)->tp_name);
    return -1;
  }
}

static PyObject *__pyx_getprop___pyx_memoryview_T(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_1T_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_base(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_4base_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_shape(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_5shape_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_strides(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_7strides_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_suboffsets(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_10suboffsets_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_ndim(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_4ndim_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_itemsize(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_8itemsize_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_nbytes(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_6nbytes_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_size(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_4size_1__get__(o);
}

static PyMethodDef __pyx_methods_memoryview[] = {
  {"is_c_contig", (PyCFunction)__pyx_memoryview_is_c_contig, METH_NOARGS, 0},
  {"is_f_contig", (PyCFunction)__pyx_memoryview_is_f_contig, METH_NOARGS, 0},
  {"copy", (PyCFunction)__pyx_memoryview_copy, METH_NOARGS, 0},
  {"copy_fortran", (PyCFunction)__pyx_memoryview_copy_fortran, METH_NOARGS, 0},
  {"__reduce_cython__", (PyCFunction)__pyx_pw___pyx_memoryview_1__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw___pyx_memoryview_3__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_memoryview[] = {
  {(char *)"T", __pyx_getprop___pyx_memoryview_T, 0, (char *)0, 0},
  {(char *)"base", __pyx_getprop___pyx_memoryview_base, 0, (char *)0, 0},
  {(char *)"shape", __pyx_getprop___pyx_memoryview_shape, 0, (char *)0, 0},
  {(char *)"strides", __pyx_getprop___pyx_memoryview_strides, 0, (char *)0, 0},
  {(char *)"suboffsets", __pyx_getprop___pyx_memoryview_suboffsets, 0, (char *)0, 0},
  {(char *)"ndim", __pyx_getprop___pyx_memoryview_ndim, 0, (char *)0, 0},
  {(char *)"itemsize", __pyx_getprop___pyx_memoryview_itemsize, 0, (char *)0, 0},
  {(char *)"nbytes", __pyx_getprop___pyx_memoryview_nbytes, 0, (char *)0, 0},
  {(char *)"size", __pyx_getprop___pyx_memoryview_size, 0, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PySequenceMethods __pyx_tp_as_sequence_memoryview = {
  __pyx_memoryview___len__, /*sq_length*/
  0, /*sq_concat*/
  0, /*sq_repeat*/
  __pyx_sq_item_memoryview, /*sq_item*/
  0, /*sq_slice*/
  0, /*sq_ass_item*/
  0, /*sq_ass_slice*/
  0, /*sq_contains*/
  0, /*sq_inplace_concat*/
  0, /*sq_inplace_repeat*/
};

static PyMappingMethods __pyx_tp_as_mapping_memoryview = {
  __pyx_memoryview___len__, /*mp_length*/
  __pyx_memoryview___getitem__, /*mp_subscript*/
  __pyx_mp_ass_subscript_memoryview, /*mp_ass_subscript*/
};

static PyBufferProcs __pyx_tp_as_buffer_memoryview = {
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getreadbuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getwritebuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getsegcount*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getcharbuffer*/
  #endif
  __pyx_memoryview_getbuffer, /*bf_getbuffer*/
  0, /*bf_releasebuffer*/
};

static PyTypeObject __pyx_type___pyx_memoryview = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rnaseq_utils.memoryview", /*tp_name*/
  sizeof(struct __pyx_memoryview_obj), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_memoryview, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  __pyx_memoryview___repr__, /*tp_repr*/
  0, /*tp_as_number*/
  &__pyx_tp_as_sequence_memoryview, /*tp_as_sequence*/
  &__pyx_tp_as_mapping_memoryview, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  __pyx_memoryview___str__, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  &__pyx_tp_as_buffer_memoryview, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_memoryview, /*tp_traverse*/
  __pyx_tp_clear_memoryview, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_memoryview, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_memoryview, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  0, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_memoryview, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct__memoryviewslice __pyx_vtable__memoryviewslice;

static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_memoryviewslice_obj *p;
  PyObject *o = __pyx_tp_new_memoryview(t, a, k);
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_memoryviewslice_obj *)o);
  p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_memoryview*)__pyx_vtabptr__memoryviewslice;
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static void __pyx_tp_dealloc__memoryviewslice(PyObject *o) {
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}

static int __pyx_tp_traverse__memoryviewslice(PyObject *o, visitproc v, void *a) {
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static int __pyx_tp_clear__memoryviewslice(PyObject *o) {
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}

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  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
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  0, /*tp_dict*/
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  0, /*tp_print*/
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  {"get_source_dict", (PyCFunction)__pyx_pw_13_rnaseq_utils_12get_source_dict, METH_O, 0},
  {"build_depth_matrix", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_14build_depth_matrix, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_13build_depth_matrix},
  {"bedgraph", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_16bedgraph, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_15bedgraph},
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  {"calculate_coverage", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_22calculate_coverage, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_21calculate_coverage},
  {"get_flank", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_24get_flank, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_23get_flank},
  {"parse_SAM_CIGAR", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_29parse_SAM_CIGAR, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_28parse_SAM_CIGAR},
  {"get_max_deltas", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_37get_max_deltas, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_36get_max_deltas},
  {"has_ends", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_39has_ends, METH_VARARGS|METH_KEYWORDS, 0},
  {"get_gaps", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_13_rnaseq_utils_41get_gaps, METH_VARARGS|METH_KEYWORDS, __pyx_doc_13_rnaseq_utils_40get_gaps},
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static PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def); /*proto*/
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 *         frame = '.'
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 *         for left,right in self.ranges:
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 *         return gtf_txt[:-1]
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  /* "_rnaseq_utils.pyx":452
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 *         if format == 'gtf':
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  /* "_rnaseq_utils.pyx":635
 *             else:
 *                 print("ERROR: --splice file not recognized. Provide SJ.out.tab or BED6.")
 *                 print("For BED12/GTF/GFF3, use --reference.")             # <<<<<<<<<<<<<<
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  /* "_rnaseq_utils.pyx":913
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  /* "_rnaseq_utils.pyx":1104
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 *         self.cap_bonus = config['cap_bonus']
 *         self.verbose = config.get('verbose',False)             # <<<<<<<<<<<<<<
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 *         np.ndarray depth_matrix
 * 
 *     Sp, Ep, Sm, Em, Cp, Cm, covp, covm, covn = range(9)             # <<<<<<<<<<<<<<
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  /* "_rnaseq_utils.pyx":1537
 *         contiguous = True
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 *             coverage = depth_matrix[-3,:]             # <<<<<<<<<<<<<<
 *         elif strand == -1:
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 *             coverage = depth_matrix[-3,:]
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 *             coverage = depth_matrix[-2,:]             # <<<<<<<<<<<<<<
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 *             coverage = depth_matrix[-2,:]
 *         else:
 *             coverage = np.sum(depth_matrix[-3:,:], axis=0)             # <<<<<<<<<<<<<<
 *     elif seqtype.upper() == '5P':
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 *         contiguous = False
 *         if strand == 1:
 *             coverage = depth_matrix[0,:]             # <<<<<<<<<<<<<<
 *         elif strand == -1:
 *             coverage = depth_matrix[2,:]
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  /* "_rnaseq_utils.pyx":1555
 *             coverage = depth_matrix[0,:]
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 *             coverage = depth_matrix[2,:]             # <<<<<<<<<<<<<<
 *         else:
 *             coverage = depth_matrix[0,:] - depth_matrix[2,:]
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  /* "_rnaseq_utils.pyx":1561
 *         contiguous = False
 *         if strand == 1:
 *             coverage = depth_matrix[4,:]             # <<<<<<<<<<<<<<
 *         elif strand == -1:
 *             coverage = depth_matrix[5,:]
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  /* "_rnaseq_utils.pyx":1563
 *             coverage = depth_matrix[4,:]
 *         elif strand == -1:
 *             coverage = depth_matrix[5,:]             # <<<<<<<<<<<<<<
 *         else:
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 *         contiguous = False
 *         if strand == 1:
 *             coverage = depth_matrix[1,:]             # <<<<<<<<<<<<<<
 *         elif strand == -1:
 *             coverage = depth_matrix[3,:]
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 *             coverage = depth_matrix[1,:]
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  /* "_rnaseq_utils.pyx":1621
 *         label = None
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 * 
 *             splice = [True if i=='D' else False for i in label[1:-1:2]]             # <<<<<<<<<<<<<<
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 *     total_count = 0
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 * cdef inline int import_ufunc() except -1:
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 *         if itemsize <= 0:
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 * 
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 * def __reduce_cython__(self):
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}
#if 1 || PY_VERSION_HEX < 0x030600B1
static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs) {
    PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func);
    PyObject *globals = PyFunction_GET_GLOBALS(func);
    PyObject *argdefs = PyFunction_GET_DEFAULTS(func);
    PyObject *closure;
#if PY_MAJOR_VERSION >= 3
    PyObject *kwdefs;
#endif
    PyObject *kwtuple, **k;
    PyObject **d;
    Py_ssize_t nd;
    Py_ssize_t nk;
    PyObject *result;
    assert(kwargs == NULL || PyDict_Check(kwargs));
    nk = kwargs ? PyDict_Size(kwargs) : 0;
    if (Py_EnterRecursiveCall((char*)" while calling a Python object")) {
        return NULL;
    }
    if (
#if PY_MAJOR_VERSION >= 3
            co->co_kwonlyargcount == 0 &&
#endif
            likely(kwargs == NULL || nk == 0) &&
            co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) {
        if (argdefs == NULL && co->co_argcount == nargs) {
            result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals);
            goto done;
        }
        else if (nargs == 0 && argdefs != NULL
                 && co->co_argcount == Py_SIZE(argdefs)) {
            /* function called with no arguments, but all parameters have
               a default value: use default values as arguments .*/
            args = &PyTuple_GET_ITEM(argdefs, 0);
            result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals);
            goto done;
        }
    }
    if (kwargs != NULL) {
        Py_ssize_t pos, i;
        kwtuple = PyTuple_New(2 * nk);
        if (kwtuple == NULL) {
            result = NULL;
            goto done;
        }
        k = &PyTuple_GET_ITEM(kwtuple, 0);
        pos = i = 0;
        while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) {
            Py_INCREF(k[i]);
            Py_INCREF(k[i+1]);
            i += 2;
        }
        nk = i / 2;
    }
    else {
        kwtuple = NULL;
        k = NULL;
    }
    closure = PyFunction_GET_CLOSURE(func);
#if PY_MAJOR_VERSION >= 3
    kwdefs = PyFunction_GET_KW_DEFAULTS(func);
#endif
    if (argdefs != NULL) {
        d = &PyTuple_GET_ITEM(argdefs, 0);
        nd = Py_SIZE(argdefs);
    }
    else {
        d = NULL;
        nd = 0;
    }
#if PY_MAJOR_VERSION >= 3
    result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL,
                               args, (int)nargs,
                               k, (int)nk,
                               d, (int)nd, kwdefs, closure);
#else
    result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL,
                               args, (int)nargs,
                               k, (int)nk,
                               d, (int)nd, closure);
#endif
    Py_XDECREF(kwtuple);
done:
    Py_LeaveRecursiveCall();
    return result;
}
#endif
#endif

/* PyObjectCall */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) {
    PyObject *result;
    ternaryfunc call = Py_TYPE(func)->tp_call;
    if (unlikely(!call))
        return PyObject_Call(func, arg, kw);
    if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
        return NULL;
    result = (*call)(func, arg, kw);
    Py_LeaveRecursiveCall();
    if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
        PyErr_SetString(
            PyExc_SystemError,
            "NULL result without error in PyObject_Call");
    }
    return result;
}
#endif

/* PyObjectCallMethO */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
    PyObject *self, *result;
    PyCFunction cfunc;
    cfunc = PyCFunction_GET_FUNCTION(func);
    self = PyCFunction_GET_SELF(func);
    if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
        return NULL;
    result = cfunc(self, arg);
    Py_LeaveRecursiveCall();
    if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
        PyErr_SetString(
            PyExc_SystemError,
            "NULL result without error in PyObject_Call");
    }
    return result;
}
#endif

/* PyObjectCallOneArg */
#if CYTHON_COMPILING_IN_CPYTHON
static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) {
    PyObject *result;
    PyObject *args = PyTuple_New(1);
    if (unlikely(!args)) return NULL;
    Py_INCREF(arg);
    PyTuple_SET_ITEM(args, 0, arg);
    result = __Pyx_PyObject_Call(func, args, NULL);
    Py_DECREF(args);
    return result;
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
#if CYTHON_FAST_PYCALL
    if (PyFunction_Check(func)) {
        return __Pyx_PyFunction_FastCall(func, &arg, 1);
    }
#endif
    if (likely(PyCFunction_Check(func))) {
        if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) {
            return __Pyx_PyObject_CallMethO(func, arg);
#if CYTHON_FAST_PYCCALL
        } else if (__Pyx_PyFastCFunction_Check(func)) {
            return __Pyx_PyCFunction_FastCall(func, &arg, 1);
#endif
        }
    }
    return __Pyx__PyObject_CallOneArg(func, arg);
}
#else
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
    PyObject *result;
    PyObject *args = PyTuple_Pack(1, arg);
    if (unlikely(!args)) return NULL;
    result = __Pyx_PyObject_Call(func, args, NULL);
    Py_DECREF(args);
    return result;
}
#endif

/* GetItemInt */
static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) {
    PyObject *r;
    if (!j) return NULL;
    r = PyObject_GetItem(o, j);
    Py_DECREF(j);
    return r;
}
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
                                                              CYTHON_NCP_UNUSED int wraparound,
                                                              CYTHON_NCP_UNUSED int boundscheck) {
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    Py_ssize_t wrapped_i = i;
    if (wraparound & unlikely(i < 0)) {
        wrapped_i += PyList_GET_SIZE(o);
    }
    if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyList_GET_SIZE(o)))) {
        PyObject *r = PyList_GET_ITEM(o, wrapped_i);
        Py_INCREF(r);
        return r;
    }
    return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
#else
    return PySequence_GetItem(o, i);
#endif
}
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
                                                              CYTHON_NCP_UNUSED int wraparound,
                                                              CYTHON_NCP_UNUSED int boundscheck) {
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    Py_ssize_t wrapped_i = i;
    if (wraparound & unlikely(i < 0)) {
        wrapped_i += PyTuple_GET_SIZE(o);
    }
    if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyTuple_GET_SIZE(o)))) {
        PyObject *r = PyTuple_GET_ITEM(o, wrapped_i);
        Py_INCREF(r);
        return r;
    }
    return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
#else
    return PySequence_GetItem(o, i);
#endif
}
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list,
                                                     CYTHON_NCP_UNUSED int wraparound,
                                                     CYTHON_NCP_UNUSED int boundscheck) {
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS
    if (is_list || PyList_CheckExact(o)) {
        Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o);
        if ((!boundscheck) || (likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o))))) {
            PyObject *r = PyList_GET_ITEM(o, n);
            Py_INCREF(r);
            return r;
        }
    }
    else if (PyTuple_CheckExact(o)) {
        Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o);
        if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyTuple_GET_SIZE(o)))) {
            PyObject *r = PyTuple_GET_ITEM(o, n);
            Py_INCREF(r);
            return r;
        }
    } else {
        PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
        if (likely(m && m->sq_item)) {
            if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
                Py_ssize_t l = m->sq_length(o);
                if (likely(l >= 0)) {
                    i += l;
                } else {
                    if (!PyErr_ExceptionMatches(PyExc_OverflowError))
                        return NULL;
                    PyErr_Clear();
                }
            }
            return m->sq_item(o, i);
        }
    }
#else
    if (is_list || PySequence_Check(o)) {
        return PySequence_GetItem(o, i);
    }
#endif
    return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
}

/* pyobject_as_double */
static double __Pyx__PyObject_AsDouble(PyObject* obj) {
    PyObject* float_value;
#if !CYTHON_USE_TYPE_SLOTS
    float_value = PyNumber_Float(obj);  if ((0)) goto bad;
#else
    PyNumberMethods *nb = Py_TYPE(obj)->tp_as_number;
    if (likely(nb) && likely(nb->nb_float)) {
        float_value = nb->nb_float(obj);
        if (likely(float_value) && unlikely(!PyFloat_Check(float_value))) {
            PyErr_Format(PyExc_TypeError,
                "__float__ returned non-float (type %.200s)",
                Py_TYPE(float_value)->tp_name);
            Py_DECREF(float_value);
            goto bad;
        }
    } else if (PyUnicode_CheckExact(obj) || PyBytes_CheckExact(obj)) {
#if PY_MAJOR_VERSION >= 3
        float_value = PyFloat_FromString(obj);
#else
        float_value = PyFloat_FromString(obj, 0);
#endif
    } else {
        PyObject* args = PyTuple_New(1);
        if (unlikely(!args)) goto bad;
        PyTuple_SET_ITEM(args, 0, obj);
        float_value = PyObject_Call((PyObject*)&PyFloat_Type, args, 0);
        PyTuple_SET_ITEM(args, 0, 0);
        Py_DECREF(args);
    }
#endif
    if (likely(float_value)) {
        double value = PyFloat_AS_DOUBLE(float_value);
        Py_DECREF(float_value);
        return value;
    }
bad:
    return (double)-1;
}

/* RaiseTooManyValuesToUnpack */
static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
    PyErr_Format(PyExc_ValueError,
                 "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected);
}

/* RaiseNeedMoreValuesToUnpack */
static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
    PyErr_Format(PyExc_ValueError,
                 "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack",
                 index, (index == 1) ? "" : "s");
}

/* IterFinish */
static CYTHON_INLINE int __Pyx_IterFinish(void) {
#if CYTHON_FAST_THREAD_STATE
    PyThreadState *tstate = __Pyx_PyThreadState_Current;
    PyObject* exc_type = tstate->curexc_type;
    if (unlikely(exc_type)) {
        if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) {
            PyObject *exc_value, *exc_tb;
            exc_value = tstate->curexc_value;
            exc_tb = tstate->curexc_traceback;
            tstate->curexc_type = 0;
            tstate->curexc_value = 0;
            tstate->curexc_traceback = 0;
            Py_DECREF(exc_type);
            Py_XDECREF(exc_value);
            Py_XDECREF(exc_tb);
            return 0;
        } else {
            return -1;
        }
    }
    return 0;
#else
    if (unlikely(PyErr_Occurred())) {
        if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) {
            PyErr_Clear();
            return 0;
        } else {
            return -1;
        }
    }
    return 0;
#endif
}

/* UnpackItemEndCheck */
static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
    if (unlikely(retval)) {
        Py_DECREF(retval);
        __Pyx_RaiseTooManyValuesError(expected);
        return -1;
    } else {
        return __Pyx_IterFinish();
    }
    return 0;
}

/* PyDictVersioning */
#if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) {
    PyObject *dict = Py_TYPE(obj)->tp_dict;
    return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0;
}
static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) {
    PyObject **dictptr = NULL;
    Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset;
    if (offset) {
#if CYTHON_COMPILING_IN_CPYTHON
        dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj);
#else
        dictptr = _PyObject_GetDictPtr(obj);
#endif
    }
    return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0;
}
static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) {
    PyObject *dict = Py_TYPE(obj)->tp_dict;
    if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict)))
        return 0;
    return obj_dict_version == __Pyx_get_object_dict_version(obj);
}
#endif

/* PyObjectCallNoArg */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) {
#if CYTHON_FAST_PYCALL
    if (PyFunction_Check(func)) {
        return __Pyx_PyFunction_FastCall(func, NULL, 0);
    }
#endif
#ifdef __Pyx_CyFunction_USED
    if (likely(PyCFunction_Check(func) || __Pyx_CyFunction_Check(func)))
#else
    if (likely(PyCFunction_Check(func)))
#endif
    {
        if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) {
            return __Pyx_PyObject_CallMethO(func, NULL);
        }
    }
    return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL);
}
#endif

/* PyErrFetchRestore */
#if CYTHON_FAST_THREAD_STATE
static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    tmp_type = tstate->curexc_type;
    tmp_value = tstate->curexc_value;
    tmp_tb = tstate->curexc_traceback;
    tstate->curexc_type = type;
    tstate->curexc_value = value;
    tstate->curexc_traceback = tb;
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
}
static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
    *type = tstate->curexc_type;
    *value = tstate->curexc_value;
    *tb = tstate->curexc_traceback;
    tstate->curexc_type = 0;
    tstate->curexc_value = 0;
    tstate->curexc_traceback = 0;
}
#endif

/* WriteUnraisableException */
static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno,
                                  CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename,
                                  int full_traceback, CYTHON_UNUSED int nogil) {
    PyObject *old_exc, *old_val, *old_tb;
    PyObject *ctx;
    __Pyx_PyThreadState_declare
#ifdef WITH_THREAD
    PyGILState_STATE state;
    if (nogil)
        state = PyGILState_Ensure();
#ifdef _MSC_VER
    else state = (PyGILState_STATE)-1;
#endif
#endif
    __Pyx_PyThreadState_assign
    __Pyx_ErrFetch(&old_exc, &old_val, &old_tb);
    if (full_traceback) {
        Py_XINCREF(old_exc);
        Py_XINCREF(old_val);
        Py_XINCREF(old_tb);
        __Pyx_ErrRestore(old_exc, old_val, old_tb);
        PyErr_PrintEx(1);
    }
    #if PY_MAJOR_VERSION < 3
    ctx = PyString_FromString(name);
    #else
    ctx = PyUnicode_FromString(name);
    #endif
    __Pyx_ErrRestore(old_exc, old_val, old_tb);
    if (!ctx) {
        PyErr_WriteUnraisable(Py_None);
    } else {
        PyErr_WriteUnraisable(ctx);
        Py_DECREF(ctx);
    }
#ifdef WITH_THREAD
    if (nogil)
        PyGILState_Release(state);
#endif
}

/* PyIntBinop */
#if !CYTHON_COMPILING_IN_PYPY
static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, int inplace, int zerodivision_check) {
    (void)inplace;
    (void)zerodivision_check;
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long x;
        long a = PyInt_AS_LONG(op1);
            x = (long)((unsigned long)a + b);
            if (likely((x^a) >= 0 || (x^b) >= 0))
                return PyInt_FromLong(x);
            return PyLong_Type.tp_as_number->nb_add(op1, op2);
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS
    if (likely(PyLong_CheckExact(op1))) {
        const long b = intval;
        long a, x;
#ifdef HAVE_LONG_LONG
        const PY_LONG_LONG llb = intval;
        PY_LONG_LONG lla, llx;
#endif
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        const Py_ssize_t size = Py_SIZE(op1);
        if (likely(__Pyx_sst_abs(size) <= 1)) {
            a = likely(size) ? digits[0] : 0;
            if (size == -1) a = -a;
        } else {
            switch (size) {
                case -2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case -3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case -4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                default: return PyLong_Type.tp_as_number->nb_add(op1, op2);
            }
        }
                x = a + b;
            return PyLong_FromLong(x);
#ifdef HAVE_LONG_LONG
        long_long:
                llx = lla + llb;
            return PyLong_FromLongLong(llx);
#endif
        
        
    }
    #endif
    if (PyFloat_CheckExact(op1)) {
        const long b = intval;
        double a = PyFloat_AS_DOUBLE(op1);
            double result;
            PyFPE_START_PROTECT("add", return NULL)
            result = ((double)a) + (double)b;
            PyFPE_END_PROTECT(result)
            return PyFloat_FromDouble(result);
    }
    return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2);
}
#endif

/* ObjectGetItem */
#if CYTHON_USE_TYPE_SLOTS
static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject* index) {
    PyObject *runerr;
    Py_ssize_t key_value;
    PySequenceMethods *m = Py_TYPE(obj)->tp_as_sequence;
    if (unlikely(!(m && m->sq_item))) {
        PyErr_Format(PyExc_TypeError, "'%.200s' object is not subscriptable", Py_TYPE(obj)->tp_name);
        return NULL;
    }
    key_value = __Pyx_PyIndex_AsSsize_t(index);
    if (likely(key_value != -1 || !(runerr = PyErr_Occurred()))) {
        return __Pyx_GetItemInt_Fast(obj, key_value, 0, 1, 1);
    }
    if (PyErr_GivenExceptionMatches(runerr, PyExc_OverflowError)) {
        PyErr_Clear();
        PyErr_Format(PyExc_IndexError, "cannot fit '%.200s' into an index-sized integer", Py_TYPE(index)->tp_name);
    }
    return NULL;
}
static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key) {
    PyMappingMethods *m = Py_TYPE(obj)->tp_as_mapping;
    if (likely(m && m->mp_subscript)) {
        return m->mp_subscript(obj, key);
    }
    return __Pyx_PyObject_GetIndex(obj, key);
}
#endif

/* PyObjectCall2Args */
static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) {
    PyObject *args, *result = NULL;
    #if CYTHON_FAST_PYCALL
    if (PyFunction_Check(function)) {
        PyObject *args[2] = {arg1, arg2};
        return __Pyx_PyFunction_FastCall(function, args, 2);
    }
    #endif
    #if CYTHON_FAST_PYCCALL
    if (__Pyx_PyFastCFunction_Check(function)) {
        PyObject *args[2] = {arg1, arg2};
        return __Pyx_PyCFunction_FastCall(function, args, 2);
    }
    #endif
    args = PyTuple_New(2);
    if (unlikely(!args)) goto done;
    Py_INCREF(arg1);
    PyTuple_SET_ITEM(args, 0, arg1);
    Py_INCREF(arg2);
    PyTuple_SET_ITEM(args, 1, arg2);
    Py_INCREF(function);
    result = __Pyx_PyObject_Call(function, args, NULL);
    Py_DECREF(args);
    Py_DECREF(function);
done:
    return result;
}

/* py_abs */
#if CYTHON_USE_PYLONG_INTERNALS
static PyObject *__Pyx_PyLong_AbsNeg(PyObject *n) {
    if (likely(Py_SIZE(n) == -1)) {
        return PyLong_FromLong(((PyLongObject*)n)->ob_digit[0]);
    }
#if CYTHON_COMPILING_IN_CPYTHON
    {
        PyObject *copy = _PyLong_Copy((PyLongObject*)n);
        if (likely(copy)) {
            __Pyx_SET_SIZE(copy, -Py_SIZE(copy));
        }
        return copy;
    }
#else
    return PyNumber_Negative(n);
#endif
}
#endif

/* ArgTypeTest */
static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact)
{
    if (unlikely(!type)) {
        PyErr_SetString(PyExc_SystemError, "Missing type object");
        return 0;
    }
    else if (exact) {
        #if PY_MAJOR_VERSION == 2
        if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1;
        #endif
    }
    else {
        if (likely(__Pyx_TypeCheck(obj, type))) return 1;
    }
    PyErr_Format(PyExc_TypeError,
        "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)",
        name, type->tp_name, Py_TYPE(obj)->tp_name);
    return 0;
}

/* BytesEquals */
static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
#if CYTHON_COMPILING_IN_PYPY
    return PyObject_RichCompareBool(s1, s2, equals);
#else
    if (s1 == s2) {
        return (equals == Py_EQ);
    } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
        const char *ps1, *ps2;
        Py_ssize_t length = PyBytes_GET_SIZE(s1);
        if (length != PyBytes_GET_SIZE(s2))
            return (equals == Py_NE);
        ps1 = PyBytes_AS_STRING(s1);
        ps2 = PyBytes_AS_STRING(s2);
        if (ps1[0] != ps2[0]) {
            return (equals == Py_NE);
        } else if (length == 1) {
            return (equals == Py_EQ);
        } else {
            int result;
#if CYTHON_USE_UNICODE_INTERNALS && (PY_VERSION_HEX < 0x030B0000)
            Py_hash_t hash1, hash2;
            hash1 = ((PyBytesObject*)s1)->ob_shash;
            hash2 = ((PyBytesObject*)s2)->ob_shash;
            if (hash1 != hash2 && hash1 != -1 && hash2 != -1) {
                return (equals == Py_NE);
            }
#endif
            result = memcmp(ps1, ps2, (size_t)length);
            return (equals == Py_EQ) ? (result == 0) : (result != 0);
        }
    } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
        return (equals == Py_NE);
    } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
        return (equals == Py_NE);
    } else {
        int result;
        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
        if (!py_result)
            return -1;
        result = __Pyx_PyObject_IsTrue(py_result);
        Py_DECREF(py_result);
        return result;
    }
#endif
}

/* UnicodeEquals */
static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
#if CYTHON_COMPILING_IN_PYPY
    return PyObject_RichCompareBool(s1, s2, equals);
#else
#if PY_MAJOR_VERSION < 3
    PyObject* owned_ref = NULL;
#endif
    int s1_is_unicode, s2_is_unicode;
    if (s1 == s2) {
        goto return_eq;
    }
    s1_is_unicode = PyUnicode_CheckExact(s1);
    s2_is_unicode = PyUnicode_CheckExact(s2);
#if PY_MAJOR_VERSION < 3
    if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) {
        owned_ref = PyUnicode_FromObject(s2);
        if (unlikely(!owned_ref))
            return -1;
        s2 = owned_ref;
        s2_is_unicode = 1;
    } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) {
        owned_ref = PyUnicode_FromObject(s1);
        if (unlikely(!owned_ref))
            return -1;
        s1 = owned_ref;
        s1_is_unicode = 1;
    } else if (((!s2_is_unicode) & (!s1_is_unicode))) {
        return __Pyx_PyBytes_Equals(s1, s2, equals);
    }
#endif
    if (s1_is_unicode & s2_is_unicode) {
        Py_ssize_t length;
        int kind;
        void *data1, *data2;
        if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0))
            return -1;
        length = __Pyx_PyUnicode_GET_LENGTH(s1);
        if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) {
            goto return_ne;
        }
#if CYTHON_USE_UNICODE_INTERNALS
        {
            Py_hash_t hash1, hash2;
        #if CYTHON_PEP393_ENABLED
            hash1 = ((PyASCIIObject*)s1)->hash;
            hash2 = ((PyASCIIObject*)s2)->hash;
        #else
            hash1 = ((PyUnicodeObject*)s1)->hash;
            hash2 = ((PyUnicodeObject*)s2)->hash;
        #endif
            if (hash1 != hash2 && hash1 != -1 && hash2 != -1) {
                goto return_ne;
            }
        }
#endif
        kind = __Pyx_PyUnicode_KIND(s1);
        if (kind != __Pyx_PyUnicode_KIND(s2)) {
            goto return_ne;
        }
        data1 = __Pyx_PyUnicode_DATA(s1);
        data2 = __Pyx_PyUnicode_DATA(s2);
        if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) {
            goto return_ne;
        } else if (length == 1) {
            goto return_eq;
        } else {
            int result = memcmp(data1, data2, (size_t)(length * kind));
            #if PY_MAJOR_VERSION < 3
            Py_XDECREF(owned_ref);
            #endif
            return (equals == Py_EQ) ? (result == 0) : (result != 0);
        }
    } else if ((s1 == Py_None) & s2_is_unicode) {
        goto return_ne;
    } else if ((s2 == Py_None) & s1_is_unicode) {
        goto return_ne;
    } else {
        int result;
        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
        #if PY_MAJOR_VERSION < 3
        Py_XDECREF(owned_ref);
        #endif
        if (!py_result)
            return -1;
        result = __Pyx_PyObject_IsTrue(py_result);
        Py_DECREF(py_result);
        return result;
    }
return_eq:
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(owned_ref);
    #endif
    return (equals == Py_EQ);
return_ne:
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(owned_ref);
    #endif
    return (equals == Py_NE);
#endif
}

/* UnpackUnboundCMethod */
static int __Pyx_TryUnpackUnboundCMethod(__Pyx_CachedCFunction* target) {
    PyObject *method;
    method = __Pyx_PyObject_GetAttrStr(target->type, *target->method_name);
    if (unlikely(!method))
        return -1;
    target->method = method;
#if CYTHON_COMPILING_IN_CPYTHON
    #if PY_MAJOR_VERSION >= 3
    if (likely(__Pyx_TypeCheck(method, &PyMethodDescr_Type)))
    #endif
    {
        PyMethodDescrObject *descr = (PyMethodDescrObject*) method;
        target->func = descr->d_method->ml_meth;
        target->flag = descr->d_method->ml_flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_STACKLESS);
    }
#endif
    return 0;
}

/* CallUnboundCMethod1 */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg) {
    if (likely(cfunc->func)) {
        int flag = cfunc->flag;
        if (flag == METH_O) {
            return (*(cfunc->func))(self, arg);
        } else if (PY_VERSION_HEX >= 0x030600B1 && flag == METH_FASTCALL) {
            if (PY_VERSION_HEX >= 0x030700A0) {
                return (*(__Pyx_PyCFunctionFast)(void*)(PyCFunction)cfunc->func)(self, &arg, 1);
            } else {
                return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, &arg, 1, NULL);
            }
        } else if (PY_VERSION_HEX >= 0x030700A0 && flag == (METH_FASTCALL | METH_KEYWORDS)) {
            return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, &arg, 1, NULL);
        }
    }
    return __Pyx__CallUnboundCMethod1(cfunc, self, arg);
}
#endif
static PyObject* __Pyx__CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg){
    PyObject *args, *result = NULL;
    if (unlikely(!cfunc->func && !cfunc->method) && unlikely(__Pyx_TryUnpackUnboundCMethod(cfunc) < 0)) return NULL;
#if CYTHON_COMPILING_IN_CPYTHON
    if (cfunc->func && (cfunc->flag & METH_VARARGS)) {
        args = PyTuple_New(1);
        if (unlikely(!args)) goto bad;
        Py_INCREF(arg);
        PyTuple_SET_ITEM(args, 0, arg);
        if (cfunc->flag & METH_KEYWORDS)
            result = (*(PyCFunctionWithKeywords)(void*)(PyCFunction)cfunc->func)(self, args, NULL);
        else
            result = (*cfunc->func)(self, args);
    } else {
        args = PyTuple_New(2);
        if (unlikely(!args)) goto bad;
        Py_INCREF(self);
        PyTuple_SET_ITEM(args, 0, self);
        Py_INCREF(arg);
        PyTuple_SET_ITEM(args, 1, arg);
        result = __Pyx_PyObject_Call(cfunc->method, args, NULL);
    }
#else
    args = PyTuple_Pack(2, self, arg);
    if (unlikely(!args)) goto bad;
    result = __Pyx_PyObject_Call(cfunc->method, args, NULL);
#endif
bad:
    Py_XDECREF(args);
    return result;
}

/* CallUnboundCMethod2 */
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030600B1
static CYTHON_INLINE PyObject *__Pyx_CallUnboundCMethod2(__Pyx_CachedCFunction *cfunc, PyObject *self, PyObject *arg1, PyObject *arg2) {
    if (likely(cfunc->func)) {
        PyObject *args[2] = {arg1, arg2};
        if (cfunc->flag == METH_FASTCALL) {
            #if PY_VERSION_HEX >= 0x030700A0
            return (*(__Pyx_PyCFunctionFast)(void*)(PyCFunction)cfunc->func)(self, args, 2);
            #else
            return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, args, 2, NULL);
            #endif
        }
        #if PY_VERSION_HEX >= 0x030700A0
        if (cfunc->flag == (METH_FASTCALL | METH_KEYWORDS))
            return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, args, 2, NULL);
        #endif
    }
    return __Pyx__CallUnboundCMethod2(cfunc, self, arg1, arg2);
}
#endif
static PyObject* __Pyx__CallUnboundCMethod2(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg1, PyObject* arg2){
    PyObject *args, *result = NULL;
    if (unlikely(!cfunc->func && !cfunc->method) && unlikely(__Pyx_TryUnpackUnboundCMethod(cfunc) < 0)) return NULL;
#if CYTHON_COMPILING_IN_CPYTHON
    if (cfunc->func && (cfunc->flag & METH_VARARGS)) {
        args = PyTuple_New(2);
        if (unlikely(!args)) goto bad;
        Py_INCREF(arg1);
        PyTuple_SET_ITEM(args, 0, arg1);
        Py_INCREF(arg2);
        PyTuple_SET_ITEM(args, 1, arg2);
        if (cfunc->flag & METH_KEYWORDS)
            result = (*(PyCFunctionWithKeywords)(void*)(PyCFunction)cfunc->func)(self, args, NULL);
        else
            result = (*cfunc->func)(self, args);
    } else {
        args = PyTuple_New(3);
        if (unlikely(!args)) goto bad;
        Py_INCREF(self);
        PyTuple_SET_ITEM(args, 0, self);
        Py_INCREF(arg1);
        PyTuple_SET_ITEM(args, 1, arg1);
        Py_INCREF(arg2);
        PyTuple_SET_ITEM(args, 2, arg2);
        result = __Pyx_PyObject_Call(cfunc->method, args, NULL);
    }
#else
    args = PyTuple_Pack(3, self, arg1, arg2);
    if (unlikely(!args)) goto bad;
    result = __Pyx_PyObject_Call(cfunc->method, args, NULL);
#endif
bad:
    Py_XDECREF(args);
    return result;
}

/* dict_getitem_default */
static PyObject* __Pyx_PyDict_GetItemDefault(PyObject* d, PyObject* key, PyObject* default_value) {
    PyObject* value;
#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
    value = PyDict_GetItemWithError(d, key);
    if (unlikely(!value)) {
        if (unlikely(PyErr_Occurred()))
            return NULL;
        value = default_value;
    }
    Py_INCREF(value);
    if ((1));
#else
    if (PyString_CheckExact(key) || PyUnicode_CheckExact(key) || PyInt_CheckExact(key)) {
        value = PyDict_GetItem(d, key);
        if (unlikely(!value)) {
            value = default_value;
        }
        Py_INCREF(value);
    }
#endif
    else {
        if (default_value == Py_None)
            value = __Pyx_CallUnboundCMethod1(&__pyx_umethod_PyDict_Type_get, d, key);
        else
            value = __Pyx_CallUnboundCMethod2(&__pyx_umethod_PyDict_Type_get, d, key, default_value);
    }
    return value;
}

/* GetItemIntUnicode */
static CYTHON_INLINE Py_UCS4 __Pyx_GetItemInt_Unicode_Fast(PyObject* ustring, Py_ssize_t i,
                                                           int wraparound, int boundscheck) {
    Py_ssize_t length;
    if (unlikely(__Pyx_PyUnicode_READY(ustring) < 0)) return (Py_UCS4)-1;
    if (wraparound | boundscheck) {
        length = __Pyx_PyUnicode_GET_LENGTH(ustring);
        if (wraparound & unlikely(i < 0)) i += length;
        if ((!boundscheck) || likely(__Pyx_is_valid_index(i, length))) {
            return __Pyx_PyUnicode_READ_CHAR(ustring, i);
        } else {
            PyErr_SetString(PyExc_IndexError, "string index out of range");
            return (Py_UCS4)-1;
        }
    } else {
        return __Pyx_PyUnicode_READ_CHAR(ustring, i);
    }
}

/* GetModuleGlobalName */
#if CYTHON_USE_DICT_VERSIONS
static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value)
#else
static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name)
#endif
{
    PyObject *result;
#if !CYTHON_AVOID_BORROWED_REFS
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1
    result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash);
    __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
    if (likely(result)) {
        return __Pyx_NewRef(result);
    } else if (unlikely(PyErr_Occurred())) {
        return NULL;
    }
#else
    result = PyDict_GetItem(__pyx_d, name);
    __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
    if (likely(result)) {
        return __Pyx_NewRef(result);
    }
#endif
#else
    result = PyObject_GetItem(__pyx_d, name);
    __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
    if (likely(result)) {
        return __Pyx_NewRef(result);
    }
    PyErr_Clear();
#endif
    return __Pyx_GetBuiltinName(name);
}

/* DictGetItem */
#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) {
    PyObject *value;
    value = PyDict_GetItemWithError(d, key);
    if (unlikely(!value)) {
        if (!PyErr_Occurred()) {
            if (unlikely(PyTuple_Check(key))) {
                PyObject* args = PyTuple_Pack(1, key);
                if (likely(args)) {
                    PyErr_SetObject(PyExc_KeyError, args);
                    Py_DECREF(args);
                }
            } else {
                PyErr_SetObject(PyExc_KeyError, key);
            }
        }
        return NULL;
    }
    Py_INCREF(value);
    return value;
}
#endif

/* SetItemInt */
static int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v) {
    int r;
    if (!j) return -1;
    r = PyObject_SetItem(o, j, v);
    Py_DECREF(j);
    return r;
}
static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v, int is_list,
                                               CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) {
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS
    if (is_list || PyList_CheckExact(o)) {
        Py_ssize_t n = (!wraparound) ? i : ((likely(i >= 0)) ? i : i + PyList_GET_SIZE(o));
        if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o)))) {
            PyObject* old = PyList_GET_ITEM(o, n);
            Py_INCREF(v);
            PyList_SET_ITEM(o, n, v);
            Py_DECREF(old);
            return 1;
        }
    } else {
        PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
        if (likely(m && m->sq_ass_item)) {
            if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
                Py_ssize_t l = m->sq_length(o);
                if (likely(l >= 0)) {
                    i += l;
                } else {
                    if (!PyErr_ExceptionMatches(PyExc_OverflowError))
                        return -1;
                    PyErr_Clear();
                }
            }
            return m->sq_ass_item(o, i, v);
        }
    }
#else
#if CYTHON_COMPILING_IN_PYPY
    if (is_list || (PySequence_Check(o) && !PyDict_Check(o)))
#else
    if (is_list || PySequence_Check(o))
#endif
    {
        return PySequence_SetItem(o, i, v);
    }
#endif
    return __Pyx_SetItemInt_Generic(o, PyInt_FromSsize_t(i), v);
}

/* PyIntBinop */
#if !CYTHON_COMPILING_IN_PYPY
static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, int inplace, int zerodivision_check) {
    (void)inplace;
    (void)zerodivision_check;
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long x;
        long a = PyInt_AS_LONG(op1);
            x = (long)((unsigned long)a - b);
            if (likely((x^a) >= 0 || (x^~b) >= 0))
                return PyInt_FromLong(x);
            return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS
    if (likely(PyLong_CheckExact(op1))) {
        const long b = intval;
        long a, x;
#ifdef HAVE_LONG_LONG
        const PY_LONG_LONG llb = intval;
        PY_LONG_LONG lla, llx;
#endif
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        const Py_ssize_t size = Py_SIZE(op1);
        if (likely(__Pyx_sst_abs(size) <= 1)) {
            a = likely(size) ? digits[0] : 0;
            if (size == -1) a = -a;
        } else {
            switch (size) {
                case -2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case -3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case -4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
            }
        }
                x = a - b;
            return PyLong_FromLong(x);
#ifdef HAVE_LONG_LONG
        long_long:
                llx = lla - llb;
            return PyLong_FromLongLong(llx);
#endif
        
        
    }
    #endif
    if (PyFloat_CheckExact(op1)) {
        const long b = intval;
        double a = PyFloat_AS_DOUBLE(op1);
            double result;
            PyFPE_START_PROTECT("subtract", return NULL)
            result = ((double)a) - (double)b;
            PyFPE_END_PROTECT(result)
            return PyFloat_FromDouble(result);
    }
    return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2);
}
#endif

/* PyUnicode_Substring */
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_Substring(
            PyObject* text, Py_ssize_t start, Py_ssize_t stop) {
    Py_ssize_t length;
    if (unlikely(__Pyx_PyUnicode_READY(text) == -1)) return NULL;
    length = __Pyx_PyUnicode_GET_LENGTH(text);
    if (start < 0) {
        start += length;
        if (start < 0)
            start = 0;
    }
    if (stop < 0)
        stop += length;
    else if (stop > length)
        stop = length;
    if (stop <= start)
        return __Pyx_NewRef(__pyx_empty_unicode);
#if CYTHON_PEP393_ENABLED
    return PyUnicode_FromKindAndData(PyUnicode_KIND(text),
        PyUnicode_1BYTE_DATA(text) + start*PyUnicode_KIND(text), stop-start);
#else
    return PyUnicode_FromUnicode(PyUnicode_AS_UNICODE(text)+start, stop-start);
#endif
}

/* PyObjectGetMethod */
static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method) {
    PyObject *attr;
#if CYTHON_UNPACK_METHODS && CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_PYTYPE_LOOKUP
    PyTypeObject *tp = Py_TYPE(obj);
    PyObject *descr;
    descrgetfunc f = NULL;
    PyObject **dictptr, *dict;
    int meth_found = 0;
    assert (*method == NULL);
    if (unlikely(tp->tp_getattro != PyObject_GenericGetAttr)) {
        attr = __Pyx_PyObject_GetAttrStr(obj, name);
        goto try_unpack;
    }
    if (unlikely(tp->tp_dict == NULL) && unlikely(PyType_Ready(tp) < 0)) {
        return 0;
    }
    descr = _PyType_Lookup(tp, name);
    if (likely(descr != NULL)) {
        Py_INCREF(descr);
#if PY_MAJOR_VERSION >= 3
        #ifdef __Pyx_CyFunction_USED
        if (likely(PyFunction_Check(descr) || (Py_TYPE(descr) == &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr)))
        #else
        if (likely(PyFunction_Check(descr) || (Py_TYPE(descr) == &PyMethodDescr_Type)))
        #endif
#else
        #ifdef __Pyx_CyFunction_USED
        if (likely(PyFunction_Check(descr) || __Pyx_CyFunction_Check(descr)))
        #else
        if (likely(PyFunction_Check(descr)))
        #endif
#endif
        {
            meth_found = 1;
        } else {
            f = Py_TYPE(descr)->tp_descr_get;
            if (f != NULL && PyDescr_IsData(descr)) {
                attr = f(descr, obj, (PyObject *)Py_TYPE(obj));
                Py_DECREF(descr);
                goto try_unpack;
            }
        }
    }
    dictptr = _PyObject_GetDictPtr(obj);
    if (dictptr != NULL && (dict = *dictptr) != NULL) {
        Py_INCREF(dict);
        attr = __Pyx_PyDict_GetItemStr(dict, name);
        if (attr != NULL) {
            Py_INCREF(attr);
            Py_DECREF(dict);
            Py_XDECREF(descr);
            goto try_unpack;
        }
        Py_DECREF(dict);
    }
    if (meth_found) {
        *method = descr;
        return 1;
    }
    if (f != NULL) {
        attr = f(descr, obj, (PyObject *)Py_TYPE(obj));
        Py_DECREF(descr);
        goto try_unpack;
    }
    if (descr != NULL) {
        *method = descr;
        return 0;
    }
    PyErr_Format(PyExc_AttributeError,
#if PY_MAJOR_VERSION >= 3
                 "'%.50s' object has no attribute '%U'",
                 tp->tp_name, name);
#else
                 "'%.50s' object has no attribute '%.400s'",
                 tp->tp_name, PyString_AS_STRING(name));
#endif
    return 0;
#else
    attr = __Pyx_PyObject_GetAttrStr(obj, name);
    goto try_unpack;
#endif
try_unpack:
#if CYTHON_UNPACK_METHODS
    if (likely(attr) && PyMethod_Check(attr) && likely(PyMethod_GET_SELF(attr) == obj)) {
        PyObject *function = PyMethod_GET_FUNCTION(attr);
        Py_INCREF(function);
        Py_DECREF(attr);
        *method = function;
        return 1;
    }
#endif
    *method = attr;
    return 0;
}

/* PyObjectCallMethod0 */
static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) {
    PyObject *method = NULL, *result = NULL;
    int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method);
    if (likely(is_method)) {
        result = __Pyx_PyObject_CallOneArg(method, obj);
        Py_DECREF(method);
        return result;
    }
    if (unlikely(!method)) goto bad;
    result = __Pyx_PyObject_CallNoArg(method);
    Py_DECREF(method);
bad:
    return result;
}

/* RaiseNoneIterError */
static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
}

/* UnpackTupleError */
static void __Pyx_UnpackTupleError(PyObject *t, Py_ssize_t index) {
    if (t == Py_None) {
      __Pyx_RaiseNoneNotIterableError();
    } else if (PyTuple_GET_SIZE(t) < index) {
      __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(t));
    } else {
      __Pyx_RaiseTooManyValuesError(index);
    }
}

/* UnpackTuple2 */
static CYTHON_INLINE int __Pyx_unpack_tuple2_exact(
        PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2, int decref_tuple) {
    PyObject *value1 = NULL, *value2 = NULL;
#if CYTHON_COMPILING_IN_PYPY
    value1 = PySequence_ITEM(tuple, 0);  if (unlikely(!value1)) goto bad;
    value2 = PySequence_ITEM(tuple, 1);  if (unlikely(!value2)) goto bad;
#else
    value1 = PyTuple_GET_ITEM(tuple, 0);  Py_INCREF(value1);
    value2 = PyTuple_GET_ITEM(tuple, 1);  Py_INCREF(value2);
#endif
    if (decref_tuple) {
        Py_DECREF(tuple);
    }
    *pvalue1 = value1;
    *pvalue2 = value2;
    return 0;
#if CYTHON_COMPILING_IN_PYPY
bad:
    Py_XDECREF(value1);
    Py_XDECREF(value2);
    if (decref_tuple) { Py_XDECREF(tuple); }
    return -1;
#endif
}
static int __Pyx_unpack_tuple2_generic(PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2,
                                       int has_known_size, int decref_tuple) {
    Py_ssize_t index;
    PyObject *value1 = NULL, *value2 = NULL, *iter = NULL;
    iternextfunc iternext;
    iter = PyObject_GetIter(tuple);
    if (unlikely(!iter)) goto bad;
    if (decref_tuple) { Py_DECREF(tuple); tuple = NULL; }
    iternext = Py_TYPE(iter)->tp_iternext;
    value1 = iternext(iter); if (unlikely(!value1)) { index = 0; goto unpacking_failed; }
    value2 = iternext(iter); if (unlikely(!value2)) { index = 1; goto unpacking_failed; }
    if (!has_known_size && unlikely(__Pyx_IternextUnpackEndCheck(iternext(iter), 2))) goto bad;
    Py_DECREF(iter);
    *pvalue1 = value1;
    *pvalue2 = value2;
    return 0;
unpacking_failed:
    if (!has_known_size && __Pyx_IterFinish() == 0)
        __Pyx_RaiseNeedMoreValuesError(index);
bad:
    Py_XDECREF(iter);
    Py_XDECREF(value1);
    Py_XDECREF(value2);
    if (decref_tuple) { Py_XDECREF(tuple); }
    return -1;
}

/* dict_iter */
static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* iterable, int is_dict, PyObject* method_name,
                                                   Py_ssize_t* p_orig_length, int* p_source_is_dict) {
    is_dict = is_dict || likely(PyDict_CheckExact(iterable));
    *p_source_is_dict = is_dict;
    if (is_dict) {
#if !CYTHON_COMPILING_IN_PYPY
        *p_orig_length = PyDict_Size(iterable);
        Py_INCREF(iterable);
        return iterable;
#elif PY_MAJOR_VERSION >= 3
        static PyObject *py_items = NULL, *py_keys = NULL, *py_values = NULL;
        PyObject **pp = NULL;
        if (method_name) {
            const char *name = PyUnicode_AsUTF8(method_name);
            if (strcmp(name, "iteritems") == 0) pp = &py_items;
            else if (strcmp(name, "iterkeys") == 0) pp = &py_keys;
            else if (strcmp(name, "itervalues") == 0) pp = &py_values;
            if (pp) {
                if (!*pp) {
                    *pp = PyUnicode_FromString(name + 4);
                    if (!*pp)
                        return NULL;
                }
                method_name = *pp;
            }
        }
#endif
    }
    *p_orig_length = 0;
    if (method_name) {
        PyObject* iter;
        iterable = __Pyx_PyObject_CallMethod0(iterable, method_name);
        if (!iterable)
            return NULL;
#if !CYTHON_COMPILING_IN_PYPY
        if (PyTuple_CheckExact(iterable) || PyList_CheckExact(iterable))
            return iterable;
#endif
        iter = PyObject_GetIter(iterable);
        Py_DECREF(iterable);
        return iter;
    }
    return PyObject_GetIter(iterable);
}
static CYTHON_INLINE int __Pyx_dict_iter_next(
        PyObject* iter_obj, CYTHON_NCP_UNUSED Py_ssize_t orig_length, CYTHON_NCP_UNUSED Py_ssize_t* ppos,
        PyObject** pkey, PyObject** pvalue, PyObject** pitem, int source_is_dict) {
    PyObject* next_item;
#if !CYTHON_COMPILING_IN_PYPY
    if (source_is_dict) {
        PyObject *key, *value;
        if (unlikely(orig_length != PyDict_Size(iter_obj))) {
            PyErr_SetString(PyExc_RuntimeError, "dictionary changed size during iteration");
            return -1;
        }
        if (unlikely(!PyDict_Next(iter_obj, ppos, &key, &value))) {
            return 0;
        }
        if (pitem) {
            PyObject* tuple = PyTuple_New(2);
            if (unlikely(!tuple)) {
                return -1;
            }
            Py_INCREF(key);
            Py_INCREF(value);
            PyTuple_SET_ITEM(tuple, 0, key);
            PyTuple_SET_ITEM(tuple, 1, value);
            *pitem = tuple;
        } else {
            if (pkey) {
                Py_INCREF(key);
                *pkey = key;
            }
            if (pvalue) {
                Py_INCREF(value);
                *pvalue = value;
            }
        }
        return 1;
    } else if (PyTuple_CheckExact(iter_obj)) {
        Py_ssize_t pos = *ppos;
        if (unlikely(pos >= PyTuple_GET_SIZE(iter_obj))) return 0;
        *ppos = pos + 1;
        next_item = PyTuple_GET_ITEM(iter_obj, pos);
        Py_INCREF(next_item);
    } else if (PyList_CheckExact(iter_obj)) {
        Py_ssize_t pos = *ppos;
        if (unlikely(pos >= PyList_GET_SIZE(iter_obj))) return 0;
        *ppos = pos + 1;
        next_item = PyList_GET_ITEM(iter_obj, pos);
        Py_INCREF(next_item);
    } else
#endif
    {
        next_item = PyIter_Next(iter_obj);
        if (unlikely(!next_item)) {
            return __Pyx_IterFinish();
        }
    }
    if (pitem) {
        *pitem = next_item;
    } else if (pkey && pvalue) {
        if (__Pyx_unpack_tuple2(next_item, pkey, pvalue, source_is_dict, source_is_dict, 1))
            return -1;
    } else if (pkey) {
        *pkey = next_item;
    } else {
        *pvalue = next_item;
    }
    return 1;
}

/* PyErrExceptionMatches */
#if CYTHON_FAST_THREAD_STATE
static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
    Py_ssize_t i, n;
    n = PyTuple_GET_SIZE(tuple);
#if PY_MAJOR_VERSION >= 3
    for (i=0; i<n; i++) {
        if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
    }
#endif
    for (i=0; i<n; i++) {
        if (__Pyx_PyErr_GivenExceptionMatches(exc_type, PyTuple_GET_ITEM(tuple, i))) return 1;
    }
    return 0;
}
static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) {
    PyObject *exc_type = tstate->curexc_type;
    if (exc_type == err) return 1;
    if (unlikely(!exc_type)) return 0;
    if (unlikely(PyTuple_Check(err)))
        return __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err);
    return __Pyx_PyErr_GivenExceptionMatches(exc_type, err);
}
#endif

/* GetAttr */
static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) {
#if CYTHON_USE_TYPE_SLOTS
#if PY_MAJOR_VERSION >= 3
    if (likely(PyUnicode_Check(n)))
#else
    if (likely(PyString_Check(n)))
#endif
        return __Pyx_PyObject_GetAttrStr(o, n);
#endif
    return PyObject_GetAttr(o, n);
}

/* GetAttr3 */
static PyObject *__Pyx_GetAttr3Default(PyObject *d) {
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    if (unlikely(!__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError)))
        return NULL;
    __Pyx_PyErr_Clear();
    Py_INCREF(d);
    return d;
}
static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *o, PyObject *n, PyObject *d) {
    PyObject *r = __Pyx_GetAttr(o, n);
    return (likely(r)) ? r : __Pyx_GetAttr3Default(d);
}

/* ExtTypeTest */
static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) {
    if (unlikely(!type)) {
        PyErr_SetString(PyExc_SystemError, "Missing type object");
        return 0;
    }
    if (likely(__Pyx_TypeCheck(obj, type)))
        return 1;
    PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s",
                 Py_TYPE(obj)->tp_name, type->tp_name);
    return 0;
}

/* None */
static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) {
    PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname);
}

/* CallUnboundCMethod0 */
static PyObject* __Pyx__CallUnboundCMethod0(__Pyx_CachedCFunction* cfunc, PyObject* self) {
    PyObject *args, *result = NULL;
    if (unlikely(!cfunc->method) && unlikely(__Pyx_TryUnpackUnboundCMethod(cfunc) < 0)) return NULL;
#if CYTHON_ASSUME_SAFE_MACROS
    args = PyTuple_New(1);
    if (unlikely(!args)) goto bad;
    Py_INCREF(self);
    PyTuple_SET_ITEM(args, 0, self);
#else
    args = PyTuple_Pack(1, self);
    if (unlikely(!args)) goto bad;
#endif
    result = __Pyx_PyObject_Call(cfunc->method, args, NULL);
    Py_DECREF(args);
bad:
    return result;
}

/* pop */
static CYTHON_INLINE PyObject* __Pyx__PyObject_Pop(PyObject* L) {
    if (Py_TYPE(L) == &PySet_Type) {
        return PySet_Pop(L);
    }
    return __Pyx_PyObject_CallMethod0(L, __pyx_n_s_pop);
}
#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
static CYTHON_INLINE PyObject* __Pyx_PyList_Pop(PyObject* L) {
    if (likely(PyList_GET_SIZE(L) > (((PyListObject*)L)->allocated >> 1))) {
        __Pyx_SET_SIZE(L, Py_SIZE(L) - 1);
        return PyList_GET_ITEM(L, PyList_GET_SIZE(L));
    }
    return __Pyx_CallUnboundCMethod0(&__pyx_umethod_PyList_Type_pop, L);
}
#endif

/* py_dict_keys */
static CYTHON_INLINE PyObject* __Pyx_PyDict_Keys(PyObject* d) {
    if (PY_MAJOR_VERSION >= 3)
        return __Pyx_CallUnboundCMethod0(&__pyx_umethod_PyDict_Type_keys, d);
    else
        return PyDict_Keys(d);
}

/* PyObjectCallMethod1 */
static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg) {
    PyObject *result = __Pyx_PyObject_CallOneArg(method, arg);
    Py_DECREF(method);
    return result;
}
static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) {
    PyObject *method = NULL, *result;
    int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method);
    if (likely(is_method)) {
        result = __Pyx_PyObject_Call2Args(method, obj, arg);
        Py_DECREF(method);
        return result;
    }
    if (unlikely(!method)) return NULL;
    return __Pyx__PyObject_CallMethod1(method, arg);
}

/* append */
static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x) {
    if (likely(PyList_CheckExact(L))) {
        if (unlikely(__Pyx_PyList_Append(L, x) < 0)) return -1;
    } else {
        PyObject* retval = __Pyx_PyObject_CallMethod1(L, __pyx_n_s_append, x);
        if (unlikely(!retval))
            return -1;
        Py_DECREF(retval);
    }
    return 0;
}

/* SliceObject */
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(PyObject* obj,
        Py_ssize_t cstart, Py_ssize_t cstop,
        PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice,
        int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) {
#if CYTHON_USE_TYPE_SLOTS
    PyMappingMethods* mp;
#if PY_MAJOR_VERSION < 3
    PySequenceMethods* ms = Py_TYPE(obj)->tp_as_sequence;
    if (likely(ms && ms->sq_slice)) {
        if (!has_cstart) {
            if (_py_start && (*_py_start != Py_None)) {
                cstart = __Pyx_PyIndex_AsSsize_t(*_py_start);
                if ((cstart == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad;
            } else
                cstart = 0;
        }
        if (!has_cstop) {
            if (_py_stop && (*_py_stop != Py_None)) {
                cstop = __Pyx_PyIndex_AsSsize_t(*_py_stop);
                if ((cstop == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad;
            } else
                cstop = PY_SSIZE_T_MAX;
        }
        if (wraparound && unlikely((cstart < 0) | (cstop < 0)) && likely(ms->sq_length)) {
            Py_ssize_t l = ms->sq_length(obj);
            if (likely(l >= 0)) {
                if (cstop < 0) {
                    cstop += l;
                    if (cstop < 0) cstop = 0;
                }
                if (cstart < 0) {
                    cstart += l;
                    if (cstart < 0) cstart = 0;
                }
            } else {
                if (!PyErr_ExceptionMatches(PyExc_OverflowError))
                    goto bad;
                PyErr_Clear();
            }
        }
        return ms->sq_slice(obj, cstart, cstop);
    }
#endif
    mp = Py_TYPE(obj)->tp_as_mapping;
    if (likely(mp && mp->mp_subscript))
#endif
    {
        PyObject* result;
        PyObject *py_slice, *py_start, *py_stop;
        if (_py_slice) {
            py_slice = *_py_slice;
        } else {
            PyObject* owned_start = NULL;
            PyObject* owned_stop = NULL;
            if (_py_start) {
                py_start = *_py_start;
            } else {
                if (has_cstart) {
                    owned_start = py_start = PyInt_FromSsize_t(cstart);
                    if (unlikely(!py_start)) goto bad;
                } else
                    py_start = Py_None;
            }
            if (_py_stop) {
                py_stop = *_py_stop;
            } else {
                if (has_cstop) {
                    owned_stop = py_stop = PyInt_FromSsize_t(cstop);
                    if (unlikely(!py_stop)) {
                        Py_XDECREF(owned_start);
                        goto bad;
                    }
                } else
                    py_stop = Py_None;
            }
            py_slice = PySlice_New(py_start, py_stop, Py_None);
            Py_XDECREF(owned_start);
            Py_XDECREF(owned_stop);
            if (unlikely(!py_slice)) goto bad;
        }
#if CYTHON_USE_TYPE_SLOTS
        result = mp->mp_subscript(obj, py_slice);
#else
        result = PyObject_GetItem(obj, py_slice);
#endif
        if (!_py_slice) {
            Py_DECREF(py_slice);
        }
        return result;
    }
    PyErr_Format(PyExc_TypeError,
        "'%.200s' object is unsliceable", Py_TYPE(obj)->tp_name);
bad:
    return NULL;
}

/* pyfrozenset_new */
static CYTHON_INLINE PyObject* __Pyx_PyFrozenSet_New(PyObject* it) {
    if (it) {
        PyObject* result;
#if CYTHON_COMPILING_IN_PYPY
        PyObject* args;
        args = PyTuple_Pack(1, it);
        if (unlikely(!args))
            return NULL;
        result = PyObject_Call((PyObject*)&PyFrozenSet_Type, args, NULL);
        Py_DECREF(args);
        return result;
#else
        if (PyFrozenSet_CheckExact(it)) {
            Py_INCREF(it);
            return it;
        }
        result = PyFrozenSet_New(it);
        if (unlikely(!result))
            return NULL;
        if ((PY_VERSION_HEX >= 0x031000A1) || likely(PySet_GET_SIZE(result)))
            return result;
        Py_DECREF(result);
#endif
    }
#if CYTHON_USE_TYPE_SLOTS
    return PyFrozenSet_Type.tp_new(&PyFrozenSet_Type, __pyx_empty_tuple, NULL);
#else
    return PyObject_Call((PyObject*)&PyFrozenSet_Type, __pyx_empty_tuple, NULL);
#endif
}

/* PySetContains */
static int __Pyx_PySet_ContainsUnhashable(PyObject *set, PyObject *key) {
    int result = -1;
    if (PySet_Check(key) && PyErr_ExceptionMatches(PyExc_TypeError)) {
        PyObject *tmpkey;
        PyErr_Clear();
        tmpkey = __Pyx_PyFrozenSet_New(key);
        if (tmpkey != NULL) {
            result = PySet_Contains(set, tmpkey);
            Py_DECREF(tmpkey);
        }
    }
    return result;
}
static CYTHON_INLINE int __Pyx_PySet_ContainsTF(PyObject* key, PyObject* set, int eq) {
    int result = PySet_Contains(set, key);
    if (unlikely(result < 0)) {
        result = __Pyx_PySet_ContainsUnhashable(set, key);
    }
    return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
}

/* GetTopmostException */
#if CYTHON_USE_EXC_INFO_STACK
static _PyErr_StackItem *
__Pyx_PyErr_GetTopmostException(PyThreadState *tstate)
{
    _PyErr_StackItem *exc_info = tstate->exc_info;
    while ((exc_info->exc_type == NULL || exc_info->exc_type == Py_None) &&
           exc_info->previous_item != NULL)
    {
        exc_info = exc_info->previous_item;
    }
    return exc_info;
}
#endif

/* SaveResetException */
#if CYTHON_FAST_THREAD_STATE
static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
    #if CYTHON_USE_EXC_INFO_STACK
    _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate);
    *type = exc_info->exc_type;
    *value = exc_info->exc_value;
    *tb = exc_info->exc_traceback;
    #else
    *type = tstate->exc_type;
    *value = tstate->exc_value;
    *tb = tstate->exc_traceback;
    #endif
    Py_XINCREF(*type);
    Py_XINCREF(*value);
    Py_XINCREF(*tb);
}
static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    #if CYTHON_USE_EXC_INFO_STACK
    _PyErr_StackItem *exc_info = tstate->exc_info;
    tmp_type = exc_info->exc_type;
    tmp_value = exc_info->exc_value;
    tmp_tb = exc_info->exc_traceback;
    exc_info->exc_type = type;
    exc_info->exc_value = value;
    exc_info->exc_traceback = tb;
    #else
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = type;
    tstate->exc_value = value;
    tstate->exc_traceback = tb;
    #endif
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
}
#endif

/* GetException */
#if CYTHON_FAST_THREAD_STATE
static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb)
#else
static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb)
#endif
{
    PyObject *local_type, *local_value, *local_tb;
#if CYTHON_FAST_THREAD_STATE
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    local_type = tstate->curexc_type;
    local_value = tstate->curexc_value;
    local_tb = tstate->curexc_traceback;
    tstate->curexc_type = 0;
    tstate->curexc_value = 0;
    tstate->curexc_traceback = 0;
#else
    PyErr_Fetch(&local_type, &local_value, &local_tb);
#endif
    PyErr_NormalizeException(&local_type, &local_value, &local_tb);
#if CYTHON_FAST_THREAD_STATE
    if (unlikely(tstate->curexc_type))
#else
    if (unlikely(PyErr_Occurred()))
#endif
        goto bad;
    #if PY_MAJOR_VERSION >= 3
    if (local_tb) {
        if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
            goto bad;
    }
    #endif
    Py_XINCREF(local_tb);
    Py_XINCREF(local_type);
    Py_XINCREF(local_value);
    *type = local_type;
    *value = local_value;
    *tb = local_tb;
#if CYTHON_FAST_THREAD_STATE
    #if CYTHON_USE_EXC_INFO_STACK
    {
        _PyErr_StackItem *exc_info = tstate->exc_info;
        tmp_type = exc_info->exc_type;
        tmp_value = exc_info->exc_value;
        tmp_tb = exc_info->exc_traceback;
        exc_info->exc_type = local_type;
        exc_info->exc_value = local_value;
        exc_info->exc_traceback = local_tb;
    }
    #else
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = local_type;
    tstate->exc_value = local_value;
    tstate->exc_traceback = local_tb;
    #endif
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
#else
    PyErr_SetExcInfo(local_type, local_value, local_tb);
#endif
    return 0;
bad:
    *type = 0;
    *value = 0;
    *tb = 0;
    Py_XDECREF(local_type);
    Py_XDECREF(local_value);
    Py_XDECREF(local_tb);
    return -1;
}

/* RaiseException */
#if PY_MAJOR_VERSION < 3
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
                        CYTHON_UNUSED PyObject *cause) {
    __Pyx_PyThreadState_declare
    Py_XINCREF(type);
    if (!value || value == Py_None)
        value = NULL;
    else
        Py_INCREF(value);
    if (!tb || tb == Py_None)
        tb = NULL;
    else {
        Py_INCREF(tb);
        if (!PyTraceBack_Check(tb)) {
            PyErr_SetString(PyExc_TypeError,
                "raise: arg 3 must be a traceback or None");
            goto raise_error;
        }
    }
    if (PyType_Check(type)) {
#if CYTHON_COMPILING_IN_PYPY
        if (!value) {
            Py_INCREF(Py_None);
            value = Py_None;
        }
#endif
        PyErr_NormalizeException(&type, &value, &tb);
    } else {
        if (value) {
            PyErr_SetString(PyExc_TypeError,
                "instance exception may not have a separate value");
            goto raise_error;
        }
        value = type;
        type = (PyObject*) Py_TYPE(type);
        Py_INCREF(type);
        if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
            PyErr_SetString(PyExc_TypeError,
                "raise: exception class must be a subclass of BaseException");
            goto raise_error;
        }
    }
    __Pyx_PyThreadState_assign
    __Pyx_ErrRestore(type, value, tb);
    return;
raise_error:
    Py_XDECREF(value);
    Py_XDECREF(type);
    Py_XDECREF(tb);
    return;
}
#else
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
    PyObject* owned_instance = NULL;
    if (tb == Py_None) {
        tb = 0;
    } else if (tb && !PyTraceBack_Check(tb)) {
        PyErr_SetString(PyExc_TypeError,
            "raise: arg 3 must be a traceback or None");
        goto bad;
    }
    if (value == Py_None)
        value = 0;
    if (PyExceptionInstance_Check(type)) {
        if (value) {
            PyErr_SetString(PyExc_TypeError,
                "instance exception may not have a separate value");
            goto bad;
        }
        value = type;
        type = (PyObject*) Py_TYPE(value);
    } else if (PyExceptionClass_Check(type)) {
        PyObject *instance_class = NULL;
        if (value && PyExceptionInstance_Check(value)) {
            instance_class = (PyObject*) Py_TYPE(value);
            if (instance_class != type) {
                int is_subclass = PyObject_IsSubclass(instance_class, type);
                if (!is_subclass) {
                    instance_class = NULL;
                } else if (unlikely(is_subclass == -1)) {
                    goto bad;
                } else {
                    type = instance_class;
                }
            }
        }
        if (!instance_class) {
            PyObject *args;
            if (!value)
                args = PyTuple_New(0);
            else if (PyTuple_Check(value)) {
                Py_INCREF(value);
                args = value;
            } else
                args = PyTuple_Pack(1, value);
            if (!args)
                goto bad;
            owned_instance = PyObject_Call(type, args, NULL);
            Py_DECREF(args);
            if (!owned_instance)
                goto bad;
            value = owned_instance;
            if (!PyExceptionInstance_Check(value)) {
                PyErr_Format(PyExc_TypeError,
                             "calling %R should have returned an instance of "
                             "BaseException, not %R",
                             type, Py_TYPE(value));
                goto bad;
            }
        }
    } else {
        PyErr_SetString(PyExc_TypeError,
            "raise: exception class must be a subclass of BaseException");
        goto bad;
    }
    if (cause) {
        PyObject *fixed_cause;
        if (cause == Py_None) {
            fixed_cause = NULL;
        } else if (PyExceptionClass_Check(cause)) {
            fixed_cause = PyObject_CallObject(cause, NULL);
            if (fixed_cause == NULL)
                goto bad;
        } else if (PyExceptionInstance_Check(cause)) {
            fixed_cause = cause;
            Py_INCREF(fixed_cause);
        } else {
            PyErr_SetString(PyExc_TypeError,
                            "exception causes must derive from "
                            "BaseException");
            goto bad;
        }
        PyException_SetCause(value, fixed_cause);
    }
    PyErr_SetObject(type, value);
    if (tb) {
#if CYTHON_COMPILING_IN_PYPY
        PyObject *tmp_type, *tmp_value, *tmp_tb;
        PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb);
        Py_INCREF(tb);
        PyErr_Restore(tmp_type, tmp_value, tb);
        Py_XDECREF(tmp_tb);
#else
        PyThreadState *tstate = __Pyx_PyThreadState_Current;
        PyObject* tmp_tb = tstate->curexc_traceback;
        if (tb != tmp_tb) {
            Py_INCREF(tb);
            tstate->curexc_traceback = tb;
            Py_XDECREF(tmp_tb);
        }
#endif
    }
bad:
    Py_XDECREF(owned_instance);
    return;
}
#endif

/* SliceTupleAndList */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE void __Pyx_crop_slice(Py_ssize_t* _start, Py_ssize_t* _stop, Py_ssize_t* _length) {
    Py_ssize_t start = *_start, stop = *_stop, length = *_length;
    if (start < 0) {
        start += length;
        if (start < 0)
            start = 0;
    }
    if (stop < 0)
        stop += length;
    else if (stop > length)
        stop = length;
    *_length = stop - start;
    *_start = start;
    *_stop = stop;
}
static CYTHON_INLINE void __Pyx_copy_object_array(PyObject** CYTHON_RESTRICT src, PyObject** CYTHON_RESTRICT dest, Py_ssize_t length) {
    PyObject *v;
    Py_ssize_t i;
    for (i = 0; i < length; i++) {
        v = dest[i] = src[i];
        Py_INCREF(v);
    }
}
static CYTHON_INLINE PyObject* __Pyx_PyList_GetSlice(
            PyObject* src, Py_ssize_t start, Py_ssize_t stop) {
    PyObject* dest;
    Py_ssize_t length = PyList_GET_SIZE(src);
    __Pyx_crop_slice(&start, &stop, &length);
    if (unlikely(length <= 0))
        return PyList_New(0);
    dest = PyList_New(length);
    if (unlikely(!dest))
        return NULL;
    __Pyx_copy_object_array(
        ((PyListObject*)src)->ob_item + start,
        ((PyListObject*)dest)->ob_item,
        length);
    return dest;
}
static CYTHON_INLINE PyObject* __Pyx_PyTuple_GetSlice(
            PyObject* src, Py_ssize_t start, Py_ssize_t stop) {
    PyObject* dest;
    Py_ssize_t length = PyTuple_GET_SIZE(src);
    __Pyx_crop_slice(&start, &stop, &length);
    if (unlikely(length <= 0))
        return PyTuple_New(0);
    dest = PyTuple_New(length);
    if (unlikely(!dest))
        return NULL;
    __Pyx_copy_object_array(
        ((PyTupleObject*)src)->ob_item + start,
        ((PyTupleObject*)dest)->ob_item,
        length);
    return dest;
}
#endif

/* unicode_iter */
static CYTHON_INLINE int __Pyx_init_unicode_iteration(
    PyObject* ustring, Py_ssize_t *length, void** data, int *kind) {
#if CYTHON_PEP393_ENABLED
    if (unlikely(__Pyx_PyUnicode_READY(ustring) < 0)) return -1;
    *kind   = PyUnicode_KIND(ustring);
    *length = PyUnicode_GET_LENGTH(ustring);
    *data   = PyUnicode_DATA(ustring);
#else
    *kind   = 0;
    *length = PyUnicode_GET_SIZE(ustring);
    *data   = (void*)PyUnicode_AS_UNICODE(ustring);
#endif
    return 0;
}

/* PyIntCompare */
static CYTHON_INLINE PyObject* __Pyx_PyInt_NeObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED long inplace) {
    if (op1 == op2) {
        Py_RETURN_FALSE;
    }
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long a = PyInt_AS_LONG(op1);
        if (a != b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS
    if (likely(PyLong_CheckExact(op1))) {
        int unequal;
        unsigned long uintval;
        Py_ssize_t size = Py_SIZE(op1);
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        if (intval == 0) {
            if (size != 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
        } else if (intval < 0) {
            if (size >= 0)
                Py_RETURN_TRUE;
            intval = -intval;
            size = -size;
        } else {
            if (size <= 0)
                Py_RETURN_TRUE;
        }
        uintval = (unsigned long) intval;
#if PyLong_SHIFT * 4 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 4)) {
            unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 3 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 3)) {
            unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 2 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 2)) {
            unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 1 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 1)) {
            unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
            unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK));
        if (unequal != 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    #endif
    if (PyFloat_CheckExact(op1)) {
        const long b = intval;
        double a = PyFloat_AS_DOUBLE(op1);
        if ((double)a != (double)b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    return (
        PyObject_RichCompare(op1, op2, Py_NE));
}

/* IterNext */
static PyObject *__Pyx_PyIter_Next2Default(PyObject* defval) {
    PyObject* exc_type;
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    exc_type = __Pyx_PyErr_Occurred();
    if (unlikely(exc_type)) {
        if (!defval || unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)))
            return NULL;
        __Pyx_PyErr_Clear();
        Py_INCREF(defval);
        return defval;
    }
    if (defval) {
        Py_INCREF(defval);
        return defval;
    }
    __Pyx_PyErr_SetNone(PyExc_StopIteration);
    return NULL;
}
static void __Pyx_PyIter_Next_ErrorNoIterator(PyObject *iterator) {
    PyErr_Format(PyExc_TypeError,
        "%.200s object is not an iterator", Py_TYPE(iterator)->tp_name);
}
static CYTHON_INLINE PyObject *__Pyx_PyIter_Next2(PyObject* iterator, PyObject* defval) {
    PyObject* next;
    iternextfunc iternext = Py_TYPE(iterator)->tp_iternext;
    if (likely(iternext)) {
#if CYTHON_USE_TYPE_SLOTS
        next = iternext(iterator);
        if (likely(next))
            return next;
        #if PY_VERSION_HEX >= 0x02070000
        if (unlikely(iternext == &_PyObject_NextNotImplemented))
            return NULL;
        #endif
#else
        next = PyIter_Next(iterator);
        if (likely(next))
            return next;
#endif
    } else if (CYTHON_USE_TYPE_SLOTS || unlikely(!PyIter_Check(iterator))) {
        __Pyx_PyIter_Next_ErrorNoIterator(iterator);
        return NULL;
    }
#if !CYTHON_USE_TYPE_SLOTS
    else {
        next = PyIter_Next(iterator);
        if (likely(next))
            return next;
    }
#endif
    return __Pyx_PyIter_Next2Default(defval);
}

/* DelItemInt */
static int __Pyx_DelItem_Generic(PyObject *o, PyObject *j) {
    int r;
    if (!j) return -1;
    r = PyObject_DelItem(o, j);
    Py_DECREF(j);
    return r;
}
static CYTHON_INLINE int __Pyx_DelItemInt_Fast(PyObject *o, Py_ssize_t i,
                                               CYTHON_UNUSED int is_list, CYTHON_NCP_UNUSED int wraparound) {
#if !CYTHON_USE_TYPE_SLOTS
    if (is_list || PySequence_Check(o)) {
        return PySequence_DelItem(o, i);
    }
#else
    PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
    if (likely(m && m->sq_ass_item)) {
        if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
            Py_ssize_t l = m->sq_length(o);
            if (likely(l >= 0)) {
                i += l;
            } else {
                if (!PyErr_ExceptionMatches(PyExc_OverflowError))
                    return -1;
                PyErr_Clear();
            }
        }
        return m->sq_ass_item(o, i, (PyObject *)NULL);
    }
#endif
    return __Pyx_DelItem_Generic(o, PyInt_FromSsize_t(i));
}

/* PyIntCompare */
static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED long inplace) {
    if (op1 == op2) {
        Py_RETURN_TRUE;
    }
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long a = PyInt_AS_LONG(op1);
        if (a == b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS
    if (likely(PyLong_CheckExact(op1))) {
        int unequal;
        unsigned long uintval;
        Py_ssize_t size = Py_SIZE(op1);
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        if (intval == 0) {
            if (size == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
        } else if (intval < 0) {
            if (size >= 0)
                Py_RETURN_FALSE;
            intval = -intval;
            size = -size;
        } else {
            if (size <= 0)
                Py_RETURN_FALSE;
        }
        uintval = (unsigned long) intval;
#if PyLong_SHIFT * 4 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 4)) {
            unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 3 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 3)) {
            unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 2 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 2)) {
            unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 1 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 1)) {
            unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
            unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK));
        if (unequal == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    #endif
    if (PyFloat_CheckExact(op1)) {
        const long b = intval;
        double a = PyFloat_AS_DOUBLE(op1);
        if ((double)a == (double)b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    return (
        PyObject_RichCompare(op1, op2, Py_EQ));
}

/* py_dict_values */
static CYTHON_INLINE PyObject* __Pyx_PyDict_Values(PyObject* d) {
    if (PY_MAJOR_VERSION >= 3)
        return __Pyx_CallUnboundCMethod0(&__pyx_umethod_PyDict_Type_values, d);
    else
        return PyDict_Values(d);
}

/* pop_index */
static PyObject* __Pyx__PyObject_PopNewIndex(PyObject* L, PyObject* py_ix) {
    PyObject *r;
    if (unlikely(!py_ix)) return NULL;
    r = __Pyx__PyObject_PopIndex(L, py_ix);
    Py_DECREF(py_ix);
    return r;
}
static PyObject* __Pyx__PyObject_PopIndex(PyObject* L, PyObject* py_ix) {
    return __Pyx_PyObject_CallMethod1(L, __pyx_n_s_pop, py_ix);
}
#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
static PyObject* __Pyx__PyList_PopIndex(PyObject* L, PyObject* py_ix, Py_ssize_t ix) {
    Py_ssize_t size = PyList_GET_SIZE(L);
    if (likely(size > (((PyListObject*)L)->allocated >> 1))) {
        Py_ssize_t cix = ix;
        if (cix < 0) {
            cix += size;
        }
        if (likely(__Pyx_is_valid_index(cix, size))) {
            PyObject* v = PyList_GET_ITEM(L, cix);
            __Pyx_SET_SIZE(L, Py_SIZE(L) - 1);
            size -= 1;
            memmove(&PyList_GET_ITEM(L, cix), &PyList_GET_ITEM(L, cix+1), (size_t)(size-cix)*sizeof(PyObject*));
            return v;
        }
    }
    if (py_ix == Py_None) {
        return __Pyx__PyObject_PopNewIndex(L, PyInt_FromSsize_t(ix));
    } else {
        return __Pyx__PyObject_PopIndex(L, py_ix);
    }
}
#endif

/* IsLittleEndian */
static CYTHON_INLINE int __Pyx_Is_Little_Endian(void)
{
  union {
    uint32_t u32;
    uint8_t u8[4];
  } S;
  S.u32 = 0x01020304;
  return S.u8[0] == 4;
}

/* BufferFormatCheck */
static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
                              __Pyx_BufFmt_StackElem* stack,
                              __Pyx_TypeInfo* type) {
  stack[0].field = &ctx->root;
  stack[0].parent_offset = 0;
  ctx->root.type = type;
  ctx->root.name = "buffer dtype";
  ctx->root.offset = 0;
  ctx->head = stack;
  ctx->head->field = &ctx->root;
  ctx->fmt_offset = 0;
  ctx->head->parent_offset = 0;
  ctx->new_packmode = '@';
  ctx->enc_packmode = '@';
  ctx->new_count = 1;
  ctx->enc_count = 0;
  ctx->enc_type = 0;
  ctx->is_complex = 0;
  ctx->is_valid_array = 0;
  ctx->struct_alignment = 0;
  while (type->typegroup == 'S') {
    ++ctx->head;
    ctx->head->field = type->fields;
    ctx->head->parent_offset = 0;
    type = type->fields->type;
  }
}
static int __Pyx_BufFmt_ParseNumber(const char** ts) {
    int count;
    const char* t = *ts;
    if (*t < '0' || *t > '9') {
      return -1;
    } else {
        count = *t++ - '0';
        while (*t >= '0' && *t <= '9') {
            count *= 10;
            count += *t++ - '0';
        }
    }
    *ts = t;
    return count;
}
static int __Pyx_BufFmt_ExpectNumber(const char **ts) {
    int number = __Pyx_BufFmt_ParseNumber(ts);
    if (number == -1)
        PyErr_Format(PyExc_ValueError,\
                     "Does not understand character buffer dtype format string ('%c')", **ts);
    return number;
}
static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) {
  PyErr_Format(PyExc_ValueError,
               "Unexpected format string character: '%c'", ch);
}
static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) {
  switch (ch) {
    case '?': return "'bool'";
    case 'c': return "'char'";
    case 'b': return "'signed char'";
    case 'B': return "'unsigned char'";
    case 'h': return "'short'";
    case 'H': return "'unsigned short'";
    case 'i': return "'int'";
    case 'I': return "'unsigned int'";
    case 'l': return "'long'";
    case 'L': return "'unsigned long'";
    case 'q': return "'long long'";
    case 'Q': return "'unsigned long long'";
    case 'f': return (is_complex ? "'complex float'" : "'float'");
    case 'd': return (is_complex ? "'complex double'" : "'double'");
    case 'g': return (is_complex ? "'complex long double'" : "'long double'");
    case 'T': return "a struct";
    case 'O': return "Python object";
    case 'P': return "a pointer";
    case 's': case 'p': return "a string";
    case 0: return "end";
    default: return "unparseable format string";
  }
}
static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) {
  switch (ch) {
    case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return 2;
    case 'i': case 'I': case 'l': case 'L': return 4;
    case 'q': case 'Q': return 8;
    case 'f': return (is_complex ? 8 : 4);
    case 'd': return (is_complex ? 16 : 8);
    case 'g': {
      PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g')..");
      return 0;
    }
    case 'O': case 'P': return sizeof(void*);
    default:
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
}
static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) {
  switch (ch) {
    case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return sizeof(short);
    case 'i': case 'I': return sizeof(int);
    case 'l': case 'L': return sizeof(long);
    #ifdef HAVE_LONG_LONG
    case 'q': case 'Q': return sizeof(PY_LONG_LONG);
    #endif
    case 'f': return sizeof(float) * (is_complex ? 2 : 1);
    case 'd': return sizeof(double) * (is_complex ? 2 : 1);
    case 'g': return sizeof(long double) * (is_complex ? 2 : 1);
    case 'O': case 'P': return sizeof(void*);
    default: {
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
  }
}
typedef struct { char c; short x; } __Pyx_st_short;
typedef struct { char c; int x; } __Pyx_st_int;
typedef struct { char c; long x; } __Pyx_st_long;
typedef struct { char c; float x; } __Pyx_st_float;
typedef struct { char c; double x; } __Pyx_st_double;
typedef struct { char c; long double x; } __Pyx_st_longdouble;
typedef struct { char c; void *x; } __Pyx_st_void_p;
#ifdef HAVE_LONG_LONG
typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong;
#endif
static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) {
  switch (ch) {
    case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short);
    case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int);
    case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long);
#ifdef HAVE_LONG_LONG
    case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG);
#endif
    case 'f': return sizeof(__Pyx_st_float) - sizeof(float);
    case 'd': return sizeof(__Pyx_st_double) - sizeof(double);
    case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double);
    case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*);
    default:
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
}
/* These are for computing the padding at the end of the struct to align
   on the first member of the struct. This will probably the same as above,
   but we don't have any guarantees.
 */
typedef struct { short x; char c; } __Pyx_pad_short;
typedef struct { int x; char c; } __Pyx_pad_int;
typedef struct { long x; char c; } __Pyx_pad_long;
typedef struct { float x; char c; } __Pyx_pad_float;
typedef struct { double x; char c; } __Pyx_pad_double;
typedef struct { long double x; char c; } __Pyx_pad_longdouble;
typedef struct { void *x; char c; } __Pyx_pad_void_p;
#ifdef HAVE_LONG_LONG
typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong;
#endif
static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) {
  switch (ch) {
    case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short);
    case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int);
    case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long);
#ifdef HAVE_LONG_LONG
    case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG);
#endif
    case 'f': return sizeof(__Pyx_pad_float) - sizeof(float);
    case 'd': return sizeof(__Pyx_pad_double) - sizeof(double);
    case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double);
    case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*);
    default:
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
}
static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) {
  switch (ch) {
    case 'c':
        return 'H';
    case 'b': case 'h': case 'i':
    case 'l': case 'q': case 's': case 'p':
        return 'I';
    case '?': case 'B': case 'H': case 'I': case 'L': case 'Q':
        return 'U';
    case 'f': case 'd': case 'g':
        return (is_complex ? 'C' : 'R');
    case 'O':
        return 'O';
    case 'P':
        return 'P';
    default: {
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
  }
}
static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) {
  if (ctx->head == NULL || ctx->head->field == &ctx->root) {
    const char* expected;
    const char* quote;
    if (ctx->head == NULL) {
      expected = "end";
      quote = "";
    } else {
      expected = ctx->head->field->type->name;
      quote = "'";
    }
    PyErr_Format(PyExc_ValueError,
                 "Buffer dtype mismatch, expected %s%s%s but got %s",
                 quote, expected, quote,
                 __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex));
  } else {
    __Pyx_StructField* field = ctx->head->field;
    __Pyx_StructField* parent = (ctx->head - 1)->field;
    PyErr_Format(PyExc_ValueError,
                 "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'",
                 field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex),
                 parent->type->name, field->name);
  }
}
static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) {
  char group;
  size_t size, offset, arraysize = 1;
  if (ctx->enc_type == 0) return 0;
  if (ctx->head->field->type->arraysize[0]) {
    int i, ndim = 0;
    if (ctx->enc_type == 's' || ctx->enc_type == 'p') {
        ctx->is_valid_array = ctx->head->field->type->ndim == 1;
        ndim = 1;
        if (ctx->enc_count != ctx->head->field->type->arraysize[0]) {
            PyErr_Format(PyExc_ValueError,
                         "Expected a dimension of size %zu, got %zu",
                         ctx->head->field->type->arraysize[0], ctx->enc_count);
            return -1;
        }
    }
    if (!ctx->is_valid_array) {
      PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d",
                   ctx->head->field->type->ndim, ndim);
      return -1;
    }
    for (i = 0; i < ctx->head->field->type->ndim; i++) {
      arraysize *= ctx->head->field->type->arraysize[i];
    }
    ctx->is_valid_array = 0;
    ctx->enc_count = 1;
  }
  group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex);
  do {
    __Pyx_StructField* field = ctx->head->field;
    __Pyx_TypeInfo* type = field->type;
    if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') {
      size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex);
    } else {
      size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex);
    }
    if (ctx->enc_packmode == '@') {
      size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex);
      size_t align_mod_offset;
      if (align_at == 0) return -1;
      align_mod_offset = ctx->fmt_offset % align_at;
      if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset;
      if (ctx->struct_alignment == 0)
          ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type,
                                                                 ctx->is_complex);
    }
    if (type->size != size || type->typegroup != group) {
      if (type->typegroup == 'C' && type->fields != NULL) {
        size_t parent_offset = ctx->head->parent_offset + field->offset;
        ++ctx->head;
        ctx->head->field = type->fields;
        ctx->head->parent_offset = parent_offset;
        continue;
      }
      if ((type->typegroup == 'H' || group == 'H') && type->size == size) {
      } else {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return -1;
      }
    }
    offset = ctx->head->parent_offset + field->offset;
    if (ctx->fmt_offset != offset) {
      PyErr_Format(PyExc_ValueError,
                   "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected",
                   (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset);
      return -1;
    }
    ctx->fmt_offset += size;
    if (arraysize)
      ctx->fmt_offset += (arraysize - 1) * size;
    --ctx->enc_count;
    while (1) {
      if (field == &ctx->root) {
        ctx->head = NULL;
        if (ctx->enc_count != 0) {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return -1;
        }
        break;
      }
      ctx->head->field = ++field;
      if (field->type == NULL) {
        --ctx->head;
        field = ctx->head->field;
        continue;
      } else if (field->type->typegroup == 'S') {
        size_t parent_offset = ctx->head->parent_offset + field->offset;
        if (field->type->fields->type == NULL) continue;
        field = field->type->fields;
        ++ctx->head;
        ctx->head->field = field;
        ctx->head->parent_offset = parent_offset;
        break;
      } else {
        break;
      }
    }
  } while (ctx->enc_count);
  ctx->enc_type = 0;
  ctx->is_complex = 0;
  return 0;
}
static PyObject *
__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp)
{
    const char *ts = *tsp;
    int i = 0, number, ndim;
    ++ts;
    if (ctx->new_count != 1) {
        PyErr_SetString(PyExc_ValueError,
                        "Cannot handle repeated arrays in format string");
        return NULL;
    }
    if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
    ndim = ctx->head->field->type->ndim;
    while (*ts && *ts != ')') {
        switch (*ts) {
            case ' ': case '\f': case '\r': case '\n': case '\t': case '\v':  continue;
            default:  break;
        }
        number = __Pyx_BufFmt_ExpectNumber(&ts);
        if (number == -1) return NULL;
        if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i])
            return PyErr_Format(PyExc_ValueError,
                        "Expected a dimension of size %zu, got %d",
                        ctx->head->field->type->arraysize[i], number);
        if (*ts != ',' && *ts != ')')
            return PyErr_Format(PyExc_ValueError,
                                "Expected a comma in format string, got '%c'", *ts);
        if (*ts == ',') ts++;
        i++;
    }
    if (i != ndim)
        return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d",
                            ctx->head->field->type->ndim, i);
    if (!*ts) {
        PyErr_SetString(PyExc_ValueError,
                        "Unexpected end of format string, expected ')'");
        return NULL;
    }
    ctx->is_valid_array = 1;
    ctx->new_count = 1;
    *tsp = ++ts;
    return Py_None;
}
static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) {
  int got_Z = 0;
  while (1) {
    switch(*ts) {
      case 0:
        if (ctx->enc_type != 0 && ctx->head == NULL) {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return NULL;
        }
        if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
        if (ctx->head != NULL) {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return NULL;
        }
        return ts;
      case ' ':
      case '\r':
      case '\n':
        ++ts;
        break;
      case '<':
        if (!__Pyx_Is_Little_Endian()) {
          PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler");
          return NULL;
        }
        ctx->new_packmode = '=';
        ++ts;
        break;
      case '>':
      case '!':
        if (__Pyx_Is_Little_Endian()) {
          PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler");
          return NULL;
        }
        ctx->new_packmode = '=';
        ++ts;
        break;
      case '=':
      case '@':
      case '^':
        ctx->new_packmode = *ts++;
        break;
      case 'T':
        {
          const char* ts_after_sub;
          size_t i, struct_count = ctx->new_count;
          size_t struct_alignment = ctx->struct_alignment;
          ctx->new_count = 1;
          ++ts;
          if (*ts != '{') {
            PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'");
            return NULL;
          }
          if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
          ctx->enc_type = 0;
          ctx->enc_count = 0;
          ctx->struct_alignment = 0;
          ++ts;
          ts_after_sub = ts;
          for (i = 0; i != struct_count; ++i) {
            ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts);
            if (!ts_after_sub) return NULL;
          }
          ts = ts_after_sub;
          if (struct_alignment) ctx->struct_alignment = struct_alignment;
        }
        break;
      case '}':
        {
          size_t alignment = ctx->struct_alignment;
          ++ts;
          if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
          ctx->enc_type = 0;
          if (alignment && ctx->fmt_offset % alignment) {
            ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment);
          }
        }
        return ts;
      case 'x':
        if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
        ctx->fmt_offset += ctx->new_count;
        ctx->new_count = 1;
        ctx->enc_count = 0;
        ctx->enc_type = 0;
        ctx->enc_packmode = ctx->new_packmode;
        ++ts;
        break;
      case 'Z':
        got_Z = 1;
        ++ts;
        if (*ts != 'f' && *ts != 'd' && *ts != 'g') {
          __Pyx_BufFmt_RaiseUnexpectedChar('Z');
          return NULL;
        }
        CYTHON_FALLTHROUGH;
      case '?': case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I':
      case 'l': case 'L': case 'q': case 'Q':
      case 'f': case 'd': case 'g':
      case 'O': case 'p':
        if ((ctx->enc_type == *ts) && (got_Z == ctx->is_complex) &&
            (ctx->enc_packmode == ctx->new_packmode) && (!ctx->is_valid_array)) {
          ctx->enc_count += ctx->new_count;
          ctx->new_count = 1;
          got_Z = 0;
          ++ts;
          break;
        }
        CYTHON_FALLTHROUGH;
      case 's':
        if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
        ctx->enc_count = ctx->new_count;
        ctx->enc_packmode = ctx->new_packmode;
        ctx->enc_type = *ts;
        ctx->is_complex = got_Z;
        ++ts;
        ctx->new_count = 1;
        got_Z = 0;
        break;
      case ':':
        ++ts;
        while(*ts != ':') ++ts;
        ++ts;
        break;
      case '(':
        if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL;
        break;
      default:
        {
          int number = __Pyx_BufFmt_ExpectNumber(&ts);
          if (number == -1) return NULL;
          ctx->new_count = (size_t)number;
        }
    }
  }
}

/* BufferGetAndValidate */
  static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) {
  if (unlikely(info->buf == NULL)) return;
  if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL;
  __Pyx_ReleaseBuffer(info);
}
static void __Pyx_ZeroBuffer(Py_buffer* buf) {
  buf->buf = NULL;
  buf->obj = NULL;
  buf->strides = __Pyx_zeros;
  buf->shape = __Pyx_zeros;
  buf->suboffsets = __Pyx_minusones;
}
static int __Pyx__GetBufferAndValidate(
        Py_buffer* buf, PyObject* obj,  __Pyx_TypeInfo* dtype, int flags,
        int nd, int cast, __Pyx_BufFmt_StackElem* stack)
{
  buf->buf = NULL;
  if (unlikely(__Pyx_GetBuffer(obj, buf, flags) == -1)) {
    __Pyx_ZeroBuffer(buf);
    return -1;
  }
  if (unlikely(buf->ndim != nd)) {
    PyErr_Format(PyExc_ValueError,
                 "Buffer has wrong number of dimensions (expected %d, got %d)",
                 nd, buf->ndim);
    goto fail;
  }
  if (!cast) {
    __Pyx_BufFmt_Context ctx;
    __Pyx_BufFmt_Init(&ctx, stack, dtype);
    if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail;
  }
  if (unlikely((size_t)buf->itemsize != dtype->size)) {
    PyErr_Format(PyExc_ValueError,
      "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)",
      buf->itemsize, (buf->itemsize > 1) ? "s" : "",
      dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : "");
    goto fail;
  }
  if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones;
  return 0;
fail:;
  __Pyx_SafeReleaseBuffer(buf);
  return -1;
}

/* BufferIndexError */
  static void __Pyx_RaiseBufferIndexError(int axis) {
  PyErr_Format(PyExc_IndexError,
     "Out of bounds on buffer access (axis %d)", axis);
}

/* MemviewSliceInit */
  static int
__Pyx_init_memviewslice(struct __pyx_memoryview_obj *memview,
                        int ndim,
                        __Pyx_memviewslice *memviewslice,
                        int memview_is_new_reference)
{
    __Pyx_RefNannyDeclarations
    int i, retval=-1;
    Py_buffer *buf = &memview->view;
    __Pyx_RefNannySetupContext("init_memviewslice", 0);
    if (unlikely(memviewslice->memview || memviewslice->data)) {
        PyErr_SetString(PyExc_ValueError,
            "memviewslice is already initialized!");
        goto fail;
    }
    if (buf->strides) {
        for (i = 0; i < ndim; i++) {
            memviewslice->strides[i] = buf->strides[i];
        }
    } else {
        Py_ssize_t stride = buf->itemsize;
        for (i = ndim - 1; i >= 0; i--) {
            memviewslice->strides[i] = stride;
            stride *= buf->shape[i];
        }
    }
    for (i = 0; i < ndim; i++) {
        memviewslice->shape[i]   = buf->shape[i];
        if (buf->suboffsets) {
            memviewslice->suboffsets[i] = buf->suboffsets[i];
        } else {
            memviewslice->suboffsets[i] = -1;
        }
    }
    memviewslice->memview = memview;
    memviewslice->data = (char *)buf->buf;
    if (__pyx_add_acquisition_count(memview) == 0 && !memview_is_new_reference) {
        Py_INCREF(memview);
    }
    retval = 0;
    goto no_fail;
fail:
    memviewslice->memview = 0;
    memviewslice->data = 0;
    retval = -1;
no_fail:
    __Pyx_RefNannyFinishContext();
    return retval;
}
#ifndef Py_NO_RETURN
#define Py_NO_RETURN
#endif
static void __pyx_fatalerror(const char *fmt, ...) Py_NO_RETURN {
    va_list vargs;
    char msg[200];
#ifdef HAVE_STDARG_PROTOTYPES
    va_start(vargs, fmt);
#else
    va_start(vargs);
#endif
    vsnprintf(msg, 200, fmt, vargs);
    va_end(vargs);
    Py_FatalError(msg);
}
static CYTHON_INLINE int
__pyx_add_acquisition_count_locked(__pyx_atomic_int *acquisition_count,
                                   PyThread_type_lock lock)
{
    int result;
    PyThread_acquire_lock(lock, 1);
    result = (*acquisition_count)++;
    PyThread_release_lock(lock);
    return result;
}
static CYTHON_INLINE int
__pyx_sub_acquisition_count_locked(__pyx_atomic_int *acquisition_count,
                                   PyThread_type_lock lock)
{
    int result;
    PyThread_acquire_lock(lock, 1);
    result = (*acquisition_count)--;
    PyThread_release_lock(lock);
    return result;
}
static CYTHON_INLINE void
__Pyx_INC_MEMVIEW(__Pyx_memviewslice *memslice, int have_gil, int lineno)
{
    int first_time;
    struct __pyx_memoryview_obj *memview = memslice->memview;
    if (unlikely(!memview || (PyObject *) memview == Py_None))
        return;
    if (unlikely(__pyx_get_slice_count(memview) < 0))
        __pyx_fatalerror("Acquisition count is %d (line %d)",
                         __pyx_get_slice_count(memview), lineno);
    first_time = __pyx_add_acquisition_count(memview) == 0;
    if (unlikely(first_time)) {
        if (have_gil) {
            Py_INCREF((PyObject *) memview);
        } else {
            PyGILState_STATE _gilstate = PyGILState_Ensure();
            Py_INCREF((PyObject *) memview);
            PyGILState_Release(_gilstate);
        }
    }
}
static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *memslice,
                                             int have_gil, int lineno) {
    int last_time;
    struct __pyx_memoryview_obj *memview = memslice->memview;
    if (unlikely(!memview || (PyObject *) memview == Py_None)) {
        memslice->memview = NULL;
        return;
    }
    if (unlikely(__pyx_get_slice_count(memview) <= 0))
        __pyx_fatalerror("Acquisition count is %d (line %d)",
                         __pyx_get_slice_count(memview), lineno);
    last_time = __pyx_sub_acquisition_count(memview) == 1;
    memslice->data = NULL;
    if (unlikely(last_time)) {
        if (have_gil) {
            Py_CLEAR(memslice->memview);
        } else {
            PyGILState_STATE _gilstate = PyGILState_Ensure();
            Py_CLEAR(memslice->memview);
            PyGILState_Release(_gilstate);
        }
    } else {
        memslice->memview = NULL;
    }
}

/* Import */
  static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
    PyObject *empty_list = 0;
    PyObject *module = 0;
    PyObject *global_dict = 0;
    PyObject *empty_dict = 0;
    PyObject *list;
    #if PY_MAJOR_VERSION < 3
    PyObject *py_import;
    py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
    if (!py_import)
        goto bad;
    #endif
    if (from_list)
        list = from_list;
    else {
        empty_list = PyList_New(0);
        if (!empty_list)
            goto bad;
        list = empty_list;
    }
    global_dict = PyModule_GetDict(__pyx_m);
    if (!global_dict)
        goto bad;
    empty_dict = PyDict_New();
    if (!empty_dict)
        goto bad;
    {
        #if PY_MAJOR_VERSION >= 3
        if (level == -1) {
            if ((1) && (strchr(__Pyx_MODULE_NAME, '.'))) {
                module = PyImport_ImportModuleLevelObject(
                    name, global_dict, empty_dict, list, 1);
                if (!module) {
                    if (!PyErr_ExceptionMatches(PyExc_ImportError))
                        goto bad;
                    PyErr_Clear();
                }
            }
            level = 0;
        }
        #endif
        if (!module) {
            #if PY_MAJOR_VERSION < 3
            PyObject *py_level = PyInt_FromLong(level);
            if (!py_level)
                goto bad;
            module = PyObject_CallFunctionObjArgs(py_import,
                name, global_dict, empty_dict, list, py_level, (PyObject *)NULL);
            Py_DECREF(py_level);
            #else
            module = PyImport_ImportModuleLevelObject(
                name, global_dict, empty_dict, list, level);
            #endif
        }
    }
bad:
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(py_import);
    #endif
    Py_XDECREF(empty_list);
    Py_XDECREF(empty_dict);
    return module;
}

/* ImportFrom */
  static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) {
    PyObject* value = __Pyx_PyObject_GetAttrStr(module, name);
    if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) {
        PyErr_Format(PyExc_ImportError,
        #if PY_MAJOR_VERSION < 3
            "cannot import name %.230s", PyString_AS_STRING(name));
        #else
            "cannot import name %S", name);
        #endif
    }
    return value;
}

/* HasAttr */
  static CYTHON_INLINE int __Pyx_HasAttr(PyObject *o, PyObject *n) {
    PyObject *r;
    if (unlikely(!__Pyx_PyBaseString_Check(n))) {
        PyErr_SetString(PyExc_TypeError,
                        "hasattr(): attribute name must be string");
        return -1;
    }
    r = __Pyx_GetAttr(o, n);
    if (unlikely(!r)) {
        PyErr_Clear();
        return 0;
    } else {
        Py_DECREF(r);
        return 1;
    }
}

/* DivInt[Py_ssize_t] */
  static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t a, Py_ssize_t b) {
    Py_ssize_t q = a / b;
    Py_ssize_t r = a - q*b;
    q -= ((r != 0) & ((r ^ b) < 0));
    return q;
}

/* decode_c_string */
  static CYTHON_INLINE PyObject* __Pyx_decode_c_string(
         const char* cstring, Py_ssize_t start, Py_ssize_t stop,
         const char* encoding, const char* errors,
         PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)) {
    Py_ssize_t length;
    if (unlikely((start < 0) | (stop < 0))) {
        size_t slen = strlen(cstring);
        if (unlikely(slen > (size_t) PY_SSIZE_T_MAX)) {
            PyErr_SetString(PyExc_OverflowError,
                            "c-string too long to convert to Python");
            return NULL;
        }
        length = (Py_ssize_t) slen;
        if (start < 0) {
            start += length;
            if (start < 0)
                start = 0;
        }
        if (stop < 0)
            stop += length;
    }
    if (unlikely(stop <= start))
        return __Pyx_NewRef(__pyx_empty_unicode);
    length = stop - start;
    cstring += start;
    if (decode_func) {
        return decode_func(cstring, length, errors);
    } else {
        return PyUnicode_Decode(cstring, length, encoding, errors);
    }
}

/* SwapException */
  #if CYTHON_FAST_THREAD_STATE
static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    #if CYTHON_USE_EXC_INFO_STACK
    _PyErr_StackItem *exc_info = tstate->exc_info;
    tmp_type = exc_info->exc_type;
    tmp_value = exc_info->exc_value;
    tmp_tb = exc_info->exc_traceback;
    exc_info->exc_type = *type;
    exc_info->exc_value = *value;
    exc_info->exc_traceback = *tb;
    #else
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = *type;
    tstate->exc_value = *value;
    tstate->exc_traceback = *tb;
    #endif
    *type = tmp_type;
    *value = tmp_value;
    *tb = tmp_tb;
}
#else
static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb);
    PyErr_SetExcInfo(*type, *value, *tb);
    *type = tmp_type;
    *value = tmp_value;
    *tb = tmp_tb;
}
#endif

/* FastTypeChecks */
  #if CYTHON_COMPILING_IN_CPYTHON
static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) {
    while (a) {
        a = a->tp_base;
        if (a == b)
            return 1;
    }
    return b == &PyBaseObject_Type;
}
static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) {
    PyObject *mro;
    if (a == b) return 1;
    mro = a->tp_mro;
    if (likely(mro)) {
        Py_ssize_t i, n;
        n = PyTuple_GET_SIZE(mro);
        for (i = 0; i < n; i++) {
            if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b)
                return 1;
        }
        return 0;
    }
    return __Pyx_InBases(a, b);
}
#if PY_MAJOR_VERSION == 2
static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) {
    PyObject *exception, *value, *tb;
    int res;
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    __Pyx_ErrFetch(&exception, &value, &tb);
    res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0;
    if (unlikely(res == -1)) {
        PyErr_WriteUnraisable(err);
        res = 0;
    }
    if (!res) {
        res = PyObject_IsSubclass(err, exc_type2);
        if (unlikely(res == -1)) {
            PyErr_WriteUnraisable(err);
            res = 0;
        }
    }
    __Pyx_ErrRestore(exception, value, tb);
    return res;
}
#else
static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) {
    int res = exc_type1 ? __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type1) : 0;
    if (!res) {
        res = __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2);
    }
    return res;
}
#endif
static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
    Py_ssize_t i, n;
    assert(PyExceptionClass_Check(exc_type));
    n = PyTuple_GET_SIZE(tuple);
#if PY_MAJOR_VERSION >= 3
    for (i=0; i<n; i++) {
        if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
    }
#endif
    for (i=0; i<n; i++) {
        PyObject *t = PyTuple_GET_ITEM(tuple, i);
        #if PY_MAJOR_VERSION < 3
        if (likely(exc_type == t)) return 1;
        #endif
        if (likely(PyExceptionClass_Check(t))) {
            if (__Pyx_inner_PyErr_GivenExceptionMatches2(exc_type, NULL, t)) return 1;
        } else {
        }
    }
    return 0;
}
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject* exc_type) {
    if (likely(err == exc_type)) return 1;
    if (likely(PyExceptionClass_Check(err))) {
        if (likely(PyExceptionClass_Check(exc_type))) {
            return __Pyx_inner_PyErr_GivenExceptionMatches2(err, NULL, exc_type);
        } else if (likely(PyTuple_Check(exc_type))) {
            return __Pyx_PyErr_GivenExceptionMatchesTuple(err, exc_type);
        } else {
        }
    }
    return PyErr_GivenExceptionMatches(err, exc_type);
}
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *exc_type1, PyObject *exc_type2) {
    assert(PyExceptionClass_Check(exc_type1));
    assert(PyExceptionClass_Check(exc_type2));
    if (likely(err == exc_type1 || err == exc_type2)) return 1;
    if (likely(PyExceptionClass_Check(err))) {
        return __Pyx_inner_PyErr_GivenExceptionMatches2(err, exc_type1, exc_type2);
    }
    return (PyErr_GivenExceptionMatches(err, exc_type1) || PyErr_GivenExceptionMatches(err, exc_type2));
}
#endif

/* DivInt[long] */
  static CYTHON_INLINE long __Pyx_div_long(long a, long b) {
    long q = a / b;
    long r = a - q*b;
    q -= ((r != 0) & ((r ^ b) < 0));
    return q;
}

/* PyObject_GenericGetAttrNoDict */
  #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) {
    PyErr_Format(PyExc_AttributeError,
#if PY_MAJOR_VERSION >= 3
                 "'%.50s' object has no attribute '%U'",
                 tp->tp_name, attr_name);
#else
                 "'%.50s' object has no attribute '%.400s'",
                 tp->tp_name, PyString_AS_STRING(attr_name));
#endif
    return NULL;
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) {
    PyObject *descr;
    PyTypeObject *tp = Py_TYPE(obj);
    if (unlikely(!PyString_Check(attr_name))) {
        return PyObject_GenericGetAttr(obj, attr_name);
    }
    assert(!tp->tp_dictoffset);
    descr = _PyType_Lookup(tp, attr_name);
    if (unlikely(!descr)) {
        return __Pyx_RaiseGenericGetAttributeError(tp, attr_name);
    }
    Py_INCREF(descr);
    #if PY_MAJOR_VERSION < 3
    if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS)))
    #endif
    {
        descrgetfunc f = Py_TYPE(descr)->tp_descr_get;
        if (unlikely(f)) {
            PyObject *res = f(descr, obj, (PyObject *)tp);
            Py_DECREF(descr);
            return res;
        }
    }
    return descr;
}
#endif

/* PyObject_GenericGetAttr */
  #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) {
    if (unlikely(Py_TYPE(obj)->tp_dictoffset)) {
        return PyObject_GenericGetAttr(obj, attr_name);
    }
    return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name);
}
#endif

/* SetVTable */
  static int __Pyx_SetVtable(PyObject *dict, void *vtable) {
#if PY_VERSION_HEX >= 0x02070000
    PyObject *ob = PyCapsule_New(vtable, 0, 0);
#else
    PyObject *ob = PyCObject_FromVoidPtr(vtable, 0);
#endif
    if (!ob)
        goto bad;
    if (PyDict_SetItem(dict, __pyx_n_s_pyx_vtable, ob) < 0)
        goto bad;
    Py_DECREF(ob);
    return 0;
bad:
    Py_XDECREF(ob);
    return -1;
}

/* PyObjectGetAttrStrNoError */
  static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) {
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError)))
        __Pyx_PyErr_Clear();
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) {
    PyObject *result;
#if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS && PY_VERSION_HEX >= 0x030700B1
    PyTypeObject* tp = Py_TYPE(obj);
    if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) {
        return _PyObject_GenericGetAttrWithDict(obj, attr_name, NULL, 1);
    }
#endif
    result = __Pyx_PyObject_GetAttrStr(obj, attr_name);
    if (unlikely(!result)) {
        __Pyx_PyObject_GetAttrStr_ClearAttributeError();
    }
    return result;
}

/* SetupReduce */
  static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) {
  int ret;
  PyObject *name_attr;
  name_attr = __Pyx_PyObject_GetAttrStr(meth, __pyx_n_s_name_2);
  if (likely(name_attr)) {
      ret = PyObject_RichCompareBool(name_attr, name, Py_EQ);
  } else {
      ret = -1;
  }
  if (unlikely(ret < 0)) {
      PyErr_Clear();
      ret = 0;
  }
  Py_XDECREF(name_attr);
  return ret;
}
static int __Pyx_setup_reduce(PyObject* type_obj) {
    int ret = 0;
    PyObject *object_reduce = NULL;
    PyObject *object_getstate = NULL;
    PyObject *object_reduce_ex = NULL;
    PyObject *reduce = NULL;
    PyObject *reduce_ex = NULL;
    PyObject *reduce_cython = NULL;
    PyObject *setstate = NULL;
    PyObject *setstate_cython = NULL;
    PyObject *getstate = NULL;
#if CYTHON_USE_PYTYPE_LOOKUP
    getstate = _PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate);
#else
    getstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_getstate);
    if (!getstate && PyErr_Occurred()) {
        goto __PYX_BAD;
    }
#endif
    if (getstate) {
#if CYTHON_USE_PYTYPE_LOOKUP
        object_getstate = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_getstate);
#else
        object_getstate = __Pyx_PyObject_GetAttrStrNoError((PyObject*)&PyBaseObject_Type, __pyx_n_s_getstate);
        if (!object_getstate && PyErr_Occurred()) {
            goto __PYX_BAD;
        }
#endif
        if (object_getstate != getstate) {
            goto __PYX_GOOD;
        }
    }
#if CYTHON_USE_PYTYPE_LOOKUP
    object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD;
#else
    object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD;
#endif
    reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto __PYX_BAD;
    if (reduce_ex == object_reduce_ex) {
#if CYTHON_USE_PYTYPE_LOOKUP
        object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD;
#else
        object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD;
#endif
        reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto __PYX_BAD;
        if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) {
            reduce_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_reduce_cython);
            if (likely(reduce_cython)) {
                ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
                ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
            } else if (reduce == object_reduce || PyErr_Occurred()) {
                goto __PYX_BAD;
            }
            setstate = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate);
            if (!setstate) PyErr_Clear();
            if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) {
                setstate_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate_cython);
                if (likely(setstate_cython)) {
                    ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
                    ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
                } else if (!setstate || PyErr_Occurred()) {
                    goto __PYX_BAD;
                }
            }
            PyType_Modified((PyTypeObject*)type_obj);
        }
    }
    goto __PYX_GOOD;
__PYX_BAD:
    if (!PyErr_Occurred())
        PyErr_Format(PyExc_RuntimeError, "Unable to initialize pickling for %s", ((PyTypeObject*)type_obj)->tp_name);
    ret = -1;
__PYX_GOOD:
#if !CYTHON_USE_PYTYPE_LOOKUP
    Py_XDECREF(object_reduce);
    Py_XDECREF(object_reduce_ex);
    Py_XDECREF(object_getstate);
    Py_XDECREF(getstate);
#endif
    Py_XDECREF(reduce);
    Py_XDECREF(reduce_ex);
    Py_XDECREF(reduce_cython);
    Py_XDECREF(setstate);
    Py_XDECREF(setstate_cython);
    return ret;
}

/* TypeImport */
  #ifndef __PYX_HAVE_RT_ImportType
#define __PYX_HAVE_RT_ImportType
static PyTypeObject *__Pyx_ImportType(PyObject *module, const char *module_name, const char *class_name,
    size_t size, enum __Pyx_ImportType_CheckSize check_size)
{
    PyObject *result = 0;
    char warning[200];
    Py_ssize_t basicsize;
#ifdef Py_LIMITED_API
    PyObject *py_basicsize;
#endif
    result = PyObject_GetAttrString(module, class_name);
    if (!result)
        goto bad;
    if (!PyType_Check(result)) {
        PyErr_Format(PyExc_TypeError,
            "%.200s.%.200s is not a type object",
            module_name, class_name);
        goto bad;
    }
#ifndef Py_LIMITED_API
    basicsize = ((PyTypeObject *)result)->tp_basicsize;
#else
    py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
    if (!py_basicsize)
        goto bad;
    basicsize = PyLong_AsSsize_t(py_basicsize);
    Py_DECREF(py_basicsize);
    py_basicsize = 0;
    if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
        goto bad;
#endif
    if ((size_t)basicsize < size) {
        PyErr_Format(PyExc_ValueError,
            "%.200s.%.200s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        goto bad;
    }
    if (check_size == __Pyx_ImportType_CheckSize_Error && (size_t)basicsize != size) {
        PyErr_Format(PyExc_ValueError,
            "%.200s.%.200s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        goto bad;
    }
    else if (check_size == __Pyx_ImportType_CheckSize_Warn && (size_t)basicsize > size) {
        PyOS_snprintf(warning, sizeof(warning),
            "%s.%s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
    }
    return (PyTypeObject *)result;
bad:
    Py_XDECREF(result);
    return NULL;
}
#endif

/* CLineInTraceback */
  #ifndef CYTHON_CLINE_IN_TRACEBACK
static int __Pyx_CLineForTraceback(CYTHON_NCP_UNUSED PyThreadState *tstate, int c_line) {
    PyObject *use_cline;
    PyObject *ptype, *pvalue, *ptraceback;
#if CYTHON_COMPILING_IN_CPYTHON
    PyObject **cython_runtime_dict;
#endif
    if (unlikely(!__pyx_cython_runtime)) {
        return c_line;
    }
    __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
#if CYTHON_COMPILING_IN_CPYTHON
    cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime);
    if (likely(cython_runtime_dict)) {
        __PYX_PY_DICT_LOOKUP_IF_MODIFIED(
            use_cline, *cython_runtime_dict,
            __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback))
    } else
#endif
    {
      PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback);
      if (use_cline_obj) {
        use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True;
        Py_DECREF(use_cline_obj);
      } else {
        PyErr_Clear();
        use_cline = NULL;
      }
    }
    if (!use_cline) {
        c_line = 0;
        (void) PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False);
    }
    else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) {
        c_line = 0;
    }
    __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
    return c_line;
}
#endif

/* CodeObjectCache */
  static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
    int start = 0, mid = 0, end = count - 1;
    if (end >= 0 && code_line > entries[end].code_line) {
        return count;
    }
    while (start < end) {
        mid = start + (end - start) / 2;
        if (code_line < entries[mid].code_line) {
            end = mid;
        } else if (code_line > entries[mid].code_line) {
             start = mid + 1;
        } else {
            return mid;
        }
    }
    if (code_line <= entries[mid].code_line) {
        return mid;
    } else {
        return mid + 1;
    }
}
static PyCodeObject *__pyx_find_code_object(int code_line) {
    PyCodeObject* code_object;
    int pos;
    if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
        return NULL;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
        return NULL;
    }
    code_object = __pyx_code_cache.entries[pos].code_object;
    Py_INCREF(code_object);
    return code_object;
}
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
    int pos, i;
    __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
    if (unlikely(!code_line)) {
        return;
    }
    if (unlikely(!entries)) {
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
        if (likely(entries)) {
            __pyx_code_cache.entries = entries;
            __pyx_code_cache.max_count = 64;
            __pyx_code_cache.count = 1;
            entries[0].code_line = code_line;
            entries[0].code_object = code_object;
            Py_INCREF(code_object);
        }
        return;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
        PyCodeObject* tmp = entries[pos].code_object;
        entries[pos].code_object = code_object;
        Py_DECREF(tmp);
        return;
    }
    if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
        int new_max = __pyx_code_cache.max_count + 64;
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
            __pyx_code_cache.entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry));
        if (unlikely(!entries)) {
            return;
        }
        __pyx_code_cache.entries = entries;
        __pyx_code_cache.max_count = new_max;
    }
    for (i=__pyx_code_cache.count; i>pos; i--) {
        entries[i] = entries[i-1];
    }
    entries[pos].code_line = code_line;
    entries[pos].code_object = code_object;
    __pyx_code_cache.count++;
    Py_INCREF(code_object);
}

/* AddTraceback */
  #include "compile.h"
#include "frameobject.h"
#include "traceback.h"
#if PY_VERSION_HEX >= 0x030b00a6
  #ifndef Py_BUILD_CORE
    #define Py_BUILD_CORE 1
  #endif
  #include "internal/pycore_frame.h"
#endif
static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
            const char *funcname, int c_line,
            int py_line, const char *filename) {
    PyCodeObject *py_code = NULL;
    PyObject *py_funcname = NULL;
    #if PY_MAJOR_VERSION < 3
    PyObject *py_srcfile = NULL;
    py_srcfile = PyString_FromString(filename);
    if (!py_srcfile) goto bad;
    #endif
    if (c_line) {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        if (!py_funcname) goto bad;
        #else
        py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        if (!py_funcname) goto bad;
        funcname = PyUnicode_AsUTF8(py_funcname);
        if (!funcname) goto bad;
        #endif
    }
    else {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromString(funcname);
        if (!py_funcname) goto bad;
        #endif
    }
    #if PY_MAJOR_VERSION < 3
    py_code = __Pyx_PyCode_New(
        0,
        0,
        0,
        0,
        0,
        __pyx_empty_bytes, /*PyObject *code,*/
        __pyx_empty_tuple, /*PyObject *consts,*/
        __pyx_empty_tuple, /*PyObject *names,*/
        __pyx_empty_tuple, /*PyObject *varnames,*/
        __pyx_empty_tuple, /*PyObject *freevars,*/
        __pyx_empty_tuple, /*PyObject *cellvars,*/
        py_srcfile,   /*PyObject *filename,*/
        py_funcname,  /*PyObject *name,*/
        py_line,
        __pyx_empty_bytes  /*PyObject *lnotab*/
    );
    Py_DECREF(py_srcfile);
    #else
    py_code = PyCode_NewEmpty(filename, funcname, py_line);
    #endif
    Py_XDECREF(py_funcname);  // XDECREF since it's only set on Py3 if cline
    return py_code;
bad:
    Py_XDECREF(py_funcname);
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(py_srcfile);
    #endif
    return NULL;
}
static void __Pyx_AddTraceback(const char *funcname, int c_line,
                               int py_line, const char *filename) {
    PyCodeObject *py_code = 0;
    PyFrameObject *py_frame = 0;
    PyThreadState *tstate = __Pyx_PyThreadState_Current;
    PyObject *ptype, *pvalue, *ptraceback;
    if (c_line) {
        c_line = __Pyx_CLineForTraceback(tstate, c_line);
    }
    py_code = __pyx_find_code_object(c_line ? -c_line : py_line);
    if (!py_code) {
        __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
        py_code = __Pyx_CreateCodeObjectForTraceback(
            funcname, c_line, py_line, filename);
        if (!py_code) {
            /* If the code object creation fails, then we should clear the
               fetched exception references and propagate the new exception */
            Py_XDECREF(ptype);
            Py_XDECREF(pvalue);
            Py_XDECREF(ptraceback);
            goto bad;
        }
        __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
        __pyx_insert_code_object(c_line ? -c_line : py_line, py_code);
    }
    py_frame = PyFrame_New(
        tstate,            /*PyThreadState *tstate,*/
        py_code,           /*PyCodeObject *code,*/
        __pyx_d,    /*PyObject *globals,*/
        0                  /*PyObject *locals*/
    );
    if (!py_frame) goto bad;
    __Pyx_PyFrame_SetLineNumber(py_frame, py_line);
    PyTraceBack_Here(py_frame);
bad:
    Py_XDECREF(py_code);
    Py_XDECREF(py_frame);
}

/* CIntFromPyVerify */
  #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
    __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
    __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
    {\
        func_type value = func_value;\
        if (sizeof(target_type) < sizeof(func_type)) {\
            if (unlikely(value != (func_type) (target_type) value)) {\
                func_type zero = 0;\
                if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
                    return (target_type) -1;\
                if (is_unsigned && unlikely(value < zero))\
                    goto raise_neg_overflow;\
                else\
                    goto raise_overflow;\
            }\
        }\
        return (target_type) value;\
    }

/* ToPyCTupleUtility */
  static PyObject* __pyx_convert__to_py___pyx_ctuple_int__and_int(__pyx_ctuple_int__and_int value) {
    PyObject* item = NULL;
    PyObject* result = PyTuple_New(2);
    if (!result) goto bad;
        item = __Pyx_PyInt_From_int(value.f0);
        if (!item) goto bad;
        PyTuple_SET_ITEM(result, 0, item);
        item = __Pyx_PyInt_From_int(value.f1);
        if (!item) goto bad;
        PyTuple_SET_ITEM(result, 1, item);
    return result;
bad:
    Py_XDECREF(item);
    Py_XDECREF(result);
    return NULL;
}

/* FromPyCTupleUtility */
  static __pyx_ctuple_int__and_int __pyx_convert__from_py___pyx_ctuple_int__and_int(PyObject * o) {
    __pyx_ctuple_int__and_int result;
    if (!PyTuple_Check(o) || PyTuple_GET_SIZE(o) != 2) {
        PyErr_Format(PyExc_TypeError, "Expected %.16s of size %d, got %.200s", "a tuple", 2, Py_TYPE(o)->tp_name);
        goto bad;
    }
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        result.f0 = __Pyx_PyInt_As_int(PyTuple_GET_ITEM(o, 0));
        if ((result.f0 == (int)-1) && PyErr_Occurred()) goto bad;
        result.f1 = __Pyx_PyInt_As_int(PyTuple_GET_ITEM(o, 1));
        if ((result.f1 == (int)-1) && PyErr_Occurred()) goto bad;
#else
    {
        PyObject *item;
        item = PySequence_ITEM(o, 0);  if (unlikely(!item)) goto bad;
        result.f0 = __Pyx_PyInt_As_int(item);
        Py_DECREF(item);
        if ((result.f0 == (int)-1) && PyErr_Occurred()) goto bad;
        item = PySequence_ITEM(o, 1);  if (unlikely(!item)) goto bad;
        result.f1 = __Pyx_PyInt_As_int(item);
        Py_DECREF(item);
        if ((result.f1 == (int)-1) && PyErr_Occurred()) goto bad;
    }
#endif
    return result;
bad:
    return result;
}

/* ToPyCTupleUtility */
  static PyObject* __pyx_convert__to_py___pyx_ctuple_float__and_float__and_float(__pyx_ctuple_float__and_float__and_float value) {
    PyObject* item = NULL;
    PyObject* result = PyTuple_New(3);
    if (!result) goto bad;
        item = PyFloat_FromDouble(value.f0);
        if (!item) goto bad;
        PyTuple_SET_ITEM(result, 0, item);
        item = PyFloat_FromDouble(value.f1);
        if (!item) goto bad;
        PyTuple_SET_ITEM(result, 1, item);
        item = PyFloat_FromDouble(value.f2);
        if (!item) goto bad;
        PyTuple_SET_ITEM(result, 2, item);
    return result;
bad:
    Py_XDECREF(item);
    Py_XDECREF(result);
    return NULL;
}

/* FromPyCTupleUtility */
  static __pyx_ctuple_float__and_float__and_float __pyx_convert__from_py___pyx_ctuple_float__and_float__and_float(PyObject * o) {
    __pyx_ctuple_float__and_float__and_float result;
    if (!PyTuple_Check(o) || PyTuple_GET_SIZE(o) != 3) {
        PyErr_Format(PyExc_TypeError, "Expected %.16s of size %d, got %.200s", "a tuple", 3, Py_TYPE(o)->tp_name);
        goto bad;
    }
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        result.f0 = __pyx_PyFloat_AsFloat(PyTuple_GET_ITEM(o, 0));
        if ((result.f0 == (float)-1) && PyErr_Occurred()) goto bad;
        result.f1 = __pyx_PyFloat_AsFloat(PyTuple_GET_ITEM(o, 1));
        if ((result.f1 == (float)-1) && PyErr_Occurred()) goto bad;
        result.f2 = __pyx_PyFloat_AsFloat(PyTuple_GET_ITEM(o, 2));
        if ((result.f2 == (float)-1) && PyErr_Occurred()) goto bad;
#else
    {
        PyObject *item;
        item = PySequence_ITEM(o, 0);  if (unlikely(!item)) goto bad;
        result.f0 = __pyx_PyFloat_AsFloat(item);
        Py_DECREF(item);
        if ((result.f0 == (float)-1) && PyErr_Occurred()) goto bad;
        item = PySequence_ITEM(o, 1);  if (unlikely(!item)) goto bad;
        result.f1 = __pyx_PyFloat_AsFloat(item);
        Py_DECREF(item);
        if ((result.f1 == (float)-1) && PyErr_Occurred()) goto bad;
        item = PySequence_ITEM(o, 2);  if (unlikely(!item)) goto bad;
        result.f2 = __pyx_PyFloat_AsFloat(item);
        Py_DECREF(item);
        if ((result.f2 == (float)-1) && PyErr_Occurred()) goto bad;
    }
#endif
    return result;
bad:
    return result;
}

#if PY_MAJOR_VERSION < 3
static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) {
    if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags);
        if (__Pyx_TypeCheck(obj, __pyx_ptype_7cpython_5array_array)) return __pyx_pw_7cpython_5array_5array_1__getbuffer__(obj, view, flags);
        if (__Pyx_TypeCheck(obj, __pyx_array_type)) return __pyx_array_getbuffer(obj, view, flags);
        if (__Pyx_TypeCheck(obj, __pyx_memoryview_type)) return __pyx_memoryview_getbuffer(obj, view, flags);
    PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name);
    return -1;
}
static void __Pyx_ReleaseBuffer(Py_buffer *view) {
    PyObject *obj = view->obj;
    if (!obj) return;
    if (PyObject_CheckBuffer(obj)) {
        PyBuffer_Release(view);
        return;
    }
    if ((0)) {}
        else if (__Pyx_TypeCheck(obj, __pyx_ptype_7cpython_5array_array)) __pyx_pw_7cpython_5array_5array_3__releasebuffer__(obj, view);
    view->obj = NULL;
    Py_DECREF(obj);
}
#endif


  /* MemviewSliceIsContig */
  static int
__pyx_memviewslice_is_contig(const __Pyx_memviewslice mvs, char order, int ndim)
{
    int i, index, step, start;
    Py_ssize_t itemsize = mvs.memview->view.itemsize;
    if (order == 'F') {
        step = 1;
        start = 0;
    } else {
        step = -1;
        start = ndim - 1;
    }
    for (i = 0; i < ndim; i++) {
        index = start + step * i;
        if (mvs.suboffsets[index] >= 0 || mvs.strides[index] != itemsize)
            return 0;
        itemsize *= mvs.shape[index];
    }
    return 1;
}

/* OverlappingSlices */
  static void
__pyx_get_array_memory_extents(__Pyx_memviewslice *slice,
                               void **out_start, void **out_end,
                               int ndim, size_t itemsize)
{
    char *start, *end;
    int i;
    start = end = slice->data;
    for (i = 0; i < ndim; i++) {
        Py_ssize_t stride = slice->strides[i];
        Py_ssize_t extent = slice->shape[i];
        if (extent == 0) {
            *out_start = *out_end = start;
            return;
        } else {
            if (stride > 0)
                end += stride * (extent - 1);
            else
                start += stride * (extent - 1);
        }
    }
    *out_start = start;
    *out_end = end + itemsize;
}
static int
__pyx_slices_overlap(__Pyx_memviewslice *slice1,
                     __Pyx_memviewslice *slice2,
                     int ndim, size_t itemsize)
{
    void *start1, *end1, *start2, *end2;
    __pyx_get_array_memory_extents(slice1, &start1, &end1, ndim, itemsize);
    __pyx_get_array_memory_extents(slice2, &start2, &end2, ndim, itemsize);
    return (start1 < end2) && (start2 < end1);
}

/* Capsule */
  static CYTHON_INLINE PyObject *
__pyx_capsule_create(void *p, CYTHON_UNUSED const char *sig)
{
    PyObject *cobj;
#if PY_VERSION_HEX >= 0x02070000
    cobj = PyCapsule_New(p, sig, NULL);
#else
    cobj = PyCObject_FromVoidPtr(p, NULL);
#endif
    return cobj;
}

/* TypeInfoCompare */
  static int
__pyx_typeinfo_cmp(__Pyx_TypeInfo *a, __Pyx_TypeInfo *b)
{
    int i;
    if (!a || !b)
        return 0;
    if (a == b)
        return 1;
    if (a->size != b->size || a->typegroup != b->typegroup ||
            a->is_unsigned != b->is_unsigned || a->ndim != b->ndim) {
        if (a->typegroup == 'H' || b->typegroup == 'H') {
            return a->size == b->size;
        } else {
            return 0;
        }
    }
    if (a->ndim) {
        for (i = 0; i < a->ndim; i++)
            if (a->arraysize[i] != b->arraysize[i])
                return 0;
    }
    if (a->typegroup == 'S') {
        if (a->flags != b->flags)
            return 0;
        if (a->fields || b->fields) {
            if (!(a->fields && b->fields))
                return 0;
            for (i = 0; a->fields[i].type && b->fields[i].type; i++) {
                __Pyx_StructField *field_a = a->fields + i;
                __Pyx_StructField *field_b = b->fields + i;
                if (field_a->offset != field_b->offset ||
                    !__pyx_typeinfo_cmp(field_a->type, field_b->type))
                    return 0;
            }
            return !a->fields[i].type && !b->fields[i].type;
        }
    }
    return 1;
}

/* MemviewSliceValidateAndInit */
  static int
__pyx_check_strides(Py_buffer *buf, int dim, int ndim, int spec)
{
    if (buf->shape[dim] <= 1)
        return 1;
    if (buf->strides) {
        if (spec & __Pyx_MEMVIEW_CONTIG) {
            if (spec & (__Pyx_MEMVIEW_PTR|__Pyx_MEMVIEW_FULL)) {
                if (unlikely(buf->strides[dim] != sizeof(void *))) {
                    PyErr_Format(PyExc_ValueError,
                                 "Buffer is not indirectly contiguous "
                                 "in dimension %d.", dim);
                    goto fail;
                }
            } else if (unlikely(buf->strides[dim] != buf->itemsize)) {
                PyErr_SetString(PyExc_ValueError,
                                "Buffer and memoryview are not contiguous "
                                "in the same dimension.");
                goto fail;
            }
        }
        if (spec & __Pyx_MEMVIEW_FOLLOW) {
            Py_ssize_t stride = buf->strides[dim];
            if (stride < 0)
                stride = -stride;
            if (unlikely(stride < buf->itemsize)) {
                PyErr_SetString(PyExc_ValueError,
                                "Buffer and memoryview are not contiguous "
                                "in the same dimension.");
                goto fail;
            }
        }
    } else {
        if (unlikely(spec & __Pyx_MEMVIEW_CONTIG && dim != ndim - 1)) {
            PyErr_Format(PyExc_ValueError,
                         "C-contiguous buffer is not contiguous in "
                         "dimension %d", dim);
            goto fail;
        } else if (unlikely(spec & (__Pyx_MEMVIEW_PTR))) {
            PyErr_Format(PyExc_ValueError,
                         "C-contiguous buffer is not indirect in "
                         "dimension %d", dim);
            goto fail;
        } else if (unlikely(buf->suboffsets)) {
            PyErr_SetString(PyExc_ValueError,
                            "Buffer exposes suboffsets but no strides");
            goto fail;
        }
    }
    return 1;
fail:
    return 0;
}
static int
__pyx_check_suboffsets(Py_buffer *buf, int dim, CYTHON_UNUSED int ndim, int spec)
{
    if (spec & __Pyx_MEMVIEW_DIRECT) {
        if (unlikely(buf->suboffsets && buf->suboffsets[dim] >= 0)) {
            PyErr_Format(PyExc_ValueError,
                         "Buffer not compatible with direct access "
                         "in dimension %d.", dim);
            goto fail;
        }
    }
    if (spec & __Pyx_MEMVIEW_PTR) {
        if (unlikely(!buf->suboffsets || (buf->suboffsets[dim] < 0))) {
            PyErr_Format(PyExc_ValueError,
                         "Buffer is not indirectly accessible "
                         "in dimension %d.", dim);
            goto fail;
        }
    }
    return 1;
fail:
    return 0;
}
static int
__pyx_verify_contig(Py_buffer *buf, int ndim, int c_or_f_flag)
{
    int i;
    if (c_or_f_flag & __Pyx_IS_F_CONTIG) {
        Py_ssize_t stride = 1;
        for (i = 0; i < ndim; i++) {
            if (unlikely(stride * buf->itemsize != buf->strides[i]  &&  buf->shape[i] > 1)) {
                PyErr_SetString(PyExc_ValueError,
                    "Buffer not fortran contiguous.");
                goto fail;
            }
            stride = stride * buf->shape[i];
        }
    } else if (c_or_f_flag & __Pyx_IS_C_CONTIG) {
        Py_ssize_t stride = 1;
        for (i = ndim - 1; i >- 1; i--) {
            if (unlikely(stride * buf->itemsize != buf->strides[i]  &&  buf->shape[i] > 1)) {
                PyErr_SetString(PyExc_ValueError,
                    "Buffer not C contiguous.");
                goto fail;
            }
            stride = stride * buf->shape[i];
        }
    }
    return 1;
fail:
    return 0;
}
static int __Pyx_ValidateAndInit_memviewslice(
                int *axes_specs,
                int c_or_f_flag,
                int buf_flags,
                int ndim,
                __Pyx_TypeInfo *dtype,
                __Pyx_BufFmt_StackElem stack[],
                __Pyx_memviewslice *memviewslice,
                PyObject *original_obj)
{
    struct __pyx_memoryview_obj *memview, *new_memview;
    __Pyx_RefNannyDeclarations
    Py_buffer *buf;
    int i, spec = 0, retval = -1;
    __Pyx_BufFmt_Context ctx;
    int from_memoryview = __pyx_memoryview_check(original_obj);
    __Pyx_RefNannySetupContext("ValidateAndInit_memviewslice", 0);
    if (from_memoryview && __pyx_typeinfo_cmp(dtype, ((struct __pyx_memoryview_obj *)
                                                            original_obj)->typeinfo)) {
        memview = (struct __pyx_memoryview_obj *) original_obj;
        new_memview = NULL;
    } else {
        memview = (struct __pyx_memoryview_obj *) __pyx_memoryview_new(
                                            original_obj, buf_flags, 0, dtype);
        new_memview = memview;
        if (unlikely(!memview))
            goto fail;
    }
    buf = &memview->view;
    if (unlikely(buf->ndim != ndim)) {
        PyErr_Format(PyExc_ValueError,
                "Buffer has wrong number of dimensions (expected %d, got %d)",
                ndim, buf->ndim);
        goto fail;
    }
    if (new_memview) {
        __Pyx_BufFmt_Init(&ctx, stack, dtype);
        if (unlikely(!__Pyx_BufFmt_CheckString(&ctx, buf->format))) goto fail;
    }
    if (unlikely((unsigned) buf->itemsize != dtype->size)) {
        PyErr_Format(PyExc_ValueError,
                     "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "u byte%s) "
                     "does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "u byte%s)",
                     buf->itemsize,
                     (buf->itemsize > 1) ? "s" : "",
                     dtype->name,
                     dtype->size,
                     (dtype->size > 1) ? "s" : "");
        goto fail;
    }
    if (buf->len > 0) {
        for (i = 0; i < ndim; i++) {
            spec = axes_specs[i];
            if (unlikely(!__pyx_check_strides(buf, i, ndim, spec)))
                goto fail;
            if (unlikely(!__pyx_check_suboffsets(buf, i, ndim, spec)))
                goto fail;
        }
        if (unlikely(buf->strides && !__pyx_verify_contig(buf, ndim, c_or_f_flag)))
            goto fail;
    }
    if (unlikely(__Pyx_init_memviewslice(memview, ndim, memviewslice,
                                         new_memview != NULL) == -1)) {
        goto fail;
    }
    retval = 0;
    goto no_fail;
fail:
    Py_XDECREF(new_memview);
    retval = -1;
no_fail:
    __Pyx_RefNannyFinishContext();
    return retval;
}

/* ObjectToMemviewSlice */
  static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_ds_float(PyObject *obj, int writable_flag) {
    __Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
    __Pyx_BufFmt_StackElem stack[1];
    int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED) };
    int retcode;
    if (obj == Py_None) {
        result.memview = (struct __pyx_memoryview_obj *) Py_None;
        return result;
    }
    retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, 0,
                                                 PyBUF_RECORDS_RO | writable_flag, 1,
                                                 &__Pyx_TypeInfo_float, stack,
                                                 &result, obj);
    if (unlikely(retcode == -1))
        goto __pyx_fail;
    return result;
__pyx_fail:
    result.memview = NULL;
    result.data = NULL;
    return result;
}

/* Declarations */
  #if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
      return ::std::complex< float >(x, y);
    }
  #else
    static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
      return x + y*(__pyx_t_float_complex)_Complex_I;
    }
  #endif
#else
    static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
      __pyx_t_float_complex z;
      z.real = x;
      z.imag = y;
      return z;
    }
#endif

/* Arithmetic */
  #if CYTHON_CCOMPLEX
#else
    static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
       return (a.real == b.real) && (a.imag == b.imag);
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        __pyx_t_float_complex z;
        z.real = a.real + b.real;
        z.imag = a.imag + b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        __pyx_t_float_complex z;
        z.real = a.real - b.real;
        z.imag = a.imag - b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        __pyx_t_float_complex z;
        z.real = a.real * b.real - a.imag * b.imag;
        z.imag = a.real * b.imag + a.imag * b.real;
        return z;
    }
    #if 1
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        if (b.imag == 0) {
            return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else if (fabsf(b.real) >= fabsf(b.imag)) {
            if (b.real == 0 && b.imag == 0) {
                return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag);
            } else {
                float r = b.imag / b.real;
                float s = (float)(1.0) / (b.real + b.imag * r);
                return __pyx_t_float_complex_from_parts(
                    (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
            }
        } else {
            float r = b.real / b.imag;
            float s = (float)(1.0) / (b.imag + b.real * r);
            return __pyx_t_float_complex_from_parts(
                (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
        }
    }
    #else
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        if (b.imag == 0) {
            return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else {
            float denom = b.real * b.real + b.imag * b.imag;
            return __pyx_t_float_complex_from_parts(
                (a.real * b.real + a.imag * b.imag) / denom,
                (a.imag * b.real - a.real * b.imag) / denom);
        }
    }
    #endif
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) {
        __pyx_t_float_complex z;
        z.real = -a.real;
        z.imag = -a.imag;
        return z;
    }
    static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) {
       return (a.real == 0) && (a.imag == 0);
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) {
        __pyx_t_float_complex z;
        z.real =  a.real;
        z.imag = -a.imag;
        return z;
    }
    #if 1
        static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) {
          #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
            return sqrtf(z.real*z.real + z.imag*z.imag);
          #else
            return hypotf(z.real, z.imag);
          #endif
        }
        static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
            __pyx_t_float_complex z;
            float r, lnr, theta, z_r, z_theta;
            if (b.imag == 0 && b.real == (int)b.real) {
                if (b.real < 0) {
                    float denom = a.real * a.real + a.imag * a.imag;
                    a.real = a.real / denom;
                    a.imag = -a.imag / denom;
                    b.real = -b.real;
                }
                switch ((int)b.real) {
                    case 0:
                        z.real = 1;
                        z.imag = 0;
                        return z;
                    case 1:
                        return a;
                    case 2:
                        return __Pyx_c_prod_float(a, a);
                    case 3:
                        z = __Pyx_c_prod_float(a, a);
                        return __Pyx_c_prod_float(z, a);
                    case 4:
                        z = __Pyx_c_prod_float(a, a);
                        return __Pyx_c_prod_float(z, z);
                }
            }
            if (a.imag == 0) {
                if (a.real == 0) {
                    return a;
                } else if (b.imag == 0) {
                    z.real = powf(a.real, b.real);
                    z.imag = 0;
                    return z;
                } else if (a.real > 0) {
                    r = a.real;
                    theta = 0;
                } else {
                    r = -a.real;
                    theta = atan2f(0.0, -1.0);
                }
            } else {
                r = __Pyx_c_abs_float(a);
                theta = atan2f(a.imag, a.real);
            }
            lnr = logf(r);
            z_r = expf(lnr * b.real - theta * b.imag);
            z_theta = theta * b.real + lnr * b.imag;
            z.real = z_r * cosf(z_theta);
            z.imag = z_r * sinf(z_theta);
            return z;
        }
    #endif
#endif

/* Declarations */
  #if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
      return ::std::complex< double >(x, y);
    }
  #else
    static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
      return x + y*(__pyx_t_double_complex)_Complex_I;
    }
  #endif
#else
    static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
      __pyx_t_double_complex z;
      z.real = x;
      z.imag = y;
      return z;
    }
#endif

/* Arithmetic */
  #if CYTHON_CCOMPLEX
#else
    static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
       return (a.real == b.real) && (a.imag == b.imag);
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        __pyx_t_double_complex z;
        z.real = a.real + b.real;
        z.imag = a.imag + b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        __pyx_t_double_complex z;
        z.real = a.real - b.real;
        z.imag = a.imag - b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        __pyx_t_double_complex z;
        z.real = a.real * b.real - a.imag * b.imag;
        z.imag = a.real * b.imag + a.imag * b.real;
        return z;
    }
    #if 1
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        if (b.imag == 0) {
            return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else if (fabs(b.real) >= fabs(b.imag)) {
            if (b.real == 0 && b.imag == 0) {
                return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag);
            } else {
                double r = b.imag / b.real;
                double s = (double)(1.0) / (b.real + b.imag * r);
                return __pyx_t_double_complex_from_parts(
                    (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
            }
        } else {
            double r = b.real / b.imag;
            double s = (double)(1.0) / (b.imag + b.real * r);
            return __pyx_t_double_complex_from_parts(
                (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
        }
    }
    #else
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        if (b.imag == 0) {
            return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else {
            double denom = b.real * b.real + b.imag * b.imag;
            return __pyx_t_double_complex_from_parts(
                (a.real * b.real + a.imag * b.imag) / denom,
                (a.imag * b.real - a.real * b.imag) / denom);
        }
    }
    #endif
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) {
        __pyx_t_double_complex z;
        z.real = -a.real;
        z.imag = -a.imag;
        return z;
    }
    static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) {
       return (a.real == 0) && (a.imag == 0);
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) {
        __pyx_t_double_complex z;
        z.real =  a.real;
        z.imag = -a.imag;
        return z;
    }
    #if 1
        static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) {
          #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
            return sqrt(z.real*z.real + z.imag*z.imag);
          #else
            return hypot(z.real, z.imag);
          #endif
        }
        static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
            __pyx_t_double_complex z;
            double r, lnr, theta, z_r, z_theta;
            if (b.imag == 0 && b.real == (int)b.real) {
                if (b.real < 0) {
                    double denom = a.real * a.real + a.imag * a.imag;
                    a.real = a.real / denom;
                    a.imag = -a.imag / denom;
                    b.real = -b.real;
                }
                switch ((int)b.real) {
                    case 0:
                        z.real = 1;
                        z.imag = 0;
                        return z;
                    case 1:
                        return a;
                    case 2:
                        return __Pyx_c_prod_double(a, a);
                    case 3:
                        z = __Pyx_c_prod_double(a, a);
                        return __Pyx_c_prod_double(z, a);
                    case 4:
                        z = __Pyx_c_prod_double(a, a);
                        return __Pyx_c_prod_double(z, z);
                }
            }
            if (a.imag == 0) {
                if (a.real == 0) {
                    return a;
                } else if (b.imag == 0) {
                    z.real = pow(a.real, b.real);
                    z.imag = 0;
                    return z;
                } else if (a.real > 0) {
                    r = a.real;
                    theta = 0;
                } else {
                    r = -a.real;
                    theta = atan2(0.0, -1.0);
                }
            } else {
                r = __Pyx_c_abs_double(a);
                theta = atan2(a.imag, a.real);
            }
            lnr = log(r);
            z_r = exp(lnr * b.real - theta * b.imag);
            z_theta = theta * b.real + lnr * b.imag;
            z.real = z_r * cos(z_theta);
            z.imag = z_r * sin(z_theta);
            return z;
        }
    #endif
#endif

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const int neg_one = (int) -1, const_zero = (int) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(int) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(int) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(int) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(int),
                                     little, !is_unsigned);
    }
}

/* CIntFromPy */
  static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const int neg_one = (int) -1, const_zero = (int) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(int) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (int) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int) 0;
                case  1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0])
                case 2:
                    if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
                            return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) {
                            return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) {
                            return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (int) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(int) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int) 0;
                case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(int,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                            return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                            return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
                            return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(int) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            int val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (int) -1;
        }
    } else {
        int val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (int) -1;
        val = __Pyx_PyInt_As_int(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to int");
    return (int) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to int");
    return (int) -1;
}

/* MemviewSliceCopyTemplate */
  static __Pyx_memviewslice
__pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs,
                                 const char *mode, int ndim,
                                 size_t sizeof_dtype, int contig_flag,
                                 int dtype_is_object)
{
    __Pyx_RefNannyDeclarations
    int i;
    __Pyx_memviewslice new_mvs = { 0, 0, { 0 }, { 0 }, { 0 } };
    struct __pyx_memoryview_obj *from_memview = from_mvs->memview;
    Py_buffer *buf = &from_memview->view;
    PyObject *shape_tuple = NULL;
    PyObject *temp_int = NULL;
    struct __pyx_array_obj *array_obj = NULL;
    struct __pyx_memoryview_obj *memview_obj = NULL;
    __Pyx_RefNannySetupContext("__pyx_memoryview_copy_new_contig", 0);
    for (i = 0; i < ndim; i++) {
        if (unlikely(from_mvs->suboffsets[i] >= 0)) {
            PyErr_Format(PyExc_ValueError, "Cannot copy memoryview slice with "
                                           "indirect dimensions (axis %d)", i);
            goto fail;
        }
    }
    shape_tuple = PyTuple_New(ndim);
    if (unlikely(!shape_tuple)) {
        goto fail;
    }
    __Pyx_GOTREF(shape_tuple);
    for(i = 0; i < ndim; i++) {
        temp_int = PyInt_FromSsize_t(from_mvs->shape[i]);
        if(unlikely(!temp_int)) {
            goto fail;
        } else {
            PyTuple_SET_ITEM(shape_tuple, i, temp_int);
            temp_int = NULL;
        }
    }
    array_obj = __pyx_array_new(shape_tuple, sizeof_dtype, buf->format, (char *) mode, NULL);
    if (unlikely(!array_obj)) {
        goto fail;
    }
    __Pyx_GOTREF(array_obj);
    memview_obj = (struct __pyx_memoryview_obj *) __pyx_memoryview_new(
                                    (PyObject *) array_obj, contig_flag,
                                    dtype_is_object,
                                    from_mvs->memview->typeinfo);
    if (unlikely(!memview_obj))
        goto fail;
    if (unlikely(__Pyx_init_memviewslice(memview_obj, ndim, &new_mvs, 1) < 0))
        goto fail;
    if (unlikely(__pyx_memoryview_copy_contents(*from_mvs, new_mvs, ndim, ndim,
                                                dtype_is_object) < 0))
        goto fail;
    goto no_fail;
fail:
    __Pyx_XDECREF(new_mvs.memview);
    new_mvs.memview = NULL;
    new_mvs.data = NULL;
no_fail:
    __Pyx_XDECREF(shape_tuple);
    __Pyx_XDECREF(temp_int);
    __Pyx_XDECREF(array_obj);
    __Pyx_RefNannyFinishContext();
    return new_mvs;
}

/* CIntFromPy */
  static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const long neg_one = (long) -1, const_zero = (long) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(long) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (long) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (long) 0;
                case  1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0])
                case 2:
                    if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
                            return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) {
                            return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) {
                            return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (long) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(long) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (long) 0;
                case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(long,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                            return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                            return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                            return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(long) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            long val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (long) -1;
        }
    } else {
        long val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (long) -1;
        val = __Pyx_PyInt_As_long(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to long");
    return (long) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to long");
    return (long) -1;
}

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const long neg_one = (long) -1, const_zero = (long) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(long) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(long) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(long) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(long),
                                     little, !is_unsigned);
    }
}

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = (Py_intptr_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(Py_intptr_t) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(Py_intptr_t) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t),
                                     little, !is_unsigned);
    }
}

/* CIntFromPy */
  static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const char neg_one = (char) -1, const_zero = (char) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(char) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(char, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (char) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (char) 0;
                case  1: __PYX_VERIFY_RETURN_INT(char, digit, digits[0])
                case 2:
                    if (8 * sizeof(char) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) >= 2 * PyLong_SHIFT) {
                            return (char) (((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(char) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) >= 3 * PyLong_SHIFT) {
                            return (char) (((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(char) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) >= 4 * PyLong_SHIFT) {
                            return (char) (((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (char) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(char) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(char) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (char) 0;
                case -1: __PYX_VERIFY_RETURN_INT(char, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(char,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(char) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
                            return (char) (((char)-1)*(((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(char) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
                            return (char) ((((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
                            return (char) (((char)-1)*(((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(char) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
                            return (char) ((((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 4 * PyLong_SHIFT) {
                            return (char) (((char)-1)*(((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(char) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 4 * PyLong_SHIFT) {
                            return (char) ((((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(char) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(char) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            char val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (char) -1;
        }
    } else {
        char val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (char) -1;
        val = __Pyx_PyInt_As_char(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to char");
    return (char) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to char");
    return (char) -1;
}

/* FetchCommonType */
  static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) {
    PyObject* fake_module;
    PyTypeObject* cached_type = NULL;
    fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI);
    if (!fake_module) return NULL;
    Py_INCREF(fake_module);
    cached_type = (PyTypeObject*) PyObject_GetAttrString(fake_module, type->tp_name);
    if (cached_type) {
        if (!PyType_Check((PyObject*)cached_type)) {
            PyErr_Format(PyExc_TypeError,
                "Shared Cython type %.200s is not a type object",
                type->tp_name);
            goto bad;
        }
        if (cached_type->tp_basicsize != type->tp_basicsize) {
            PyErr_Format(PyExc_TypeError,
                "Shared Cython type %.200s has the wrong size, try recompiling",
                type->tp_name);
            goto bad;
        }
    } else {
        if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad;
        PyErr_Clear();
        if (PyType_Ready(type) < 0) goto bad;
        if (PyObject_SetAttrString(fake_module, type->tp_name, (PyObject*) type) < 0)
            goto bad;
        Py_INCREF(type);
        cached_type = type;
    }
done:
    Py_DECREF(fake_module);
    return cached_type;
bad:
    Py_XDECREF(cached_type);
    cached_type = NULL;
    goto done;
}

/* CoroutineBase */
  #include <structmember.h>
#include <frameobject.h>
#if PY_VERSION_HEX >= 0x030b00a6
  #ifndef Py_BUILD_CORE
    #define Py_BUILD_CORE 1
  #endif
  #include "internal/pycore_frame.h"
#endif
#define __Pyx_Coroutine_Undelegate(gen) Py_CLEAR((gen)->yieldfrom)
static int __Pyx_PyGen__FetchStopIterationValue(CYTHON_UNUSED PyThreadState *__pyx_tstate, PyObject **pvalue) {
    PyObject *et, *ev, *tb;
    PyObject *value = NULL;
    __Pyx_ErrFetch(&et, &ev, &tb);
    if (!et) {
        Py_XDECREF(tb);
        Py_XDECREF(ev);
        Py_INCREF(Py_None);
        *pvalue = Py_None;
        return 0;
    }
    if (likely(et == PyExc_StopIteration)) {
        if (!ev) {
            Py_INCREF(Py_None);
            value = Py_None;
        }
#if PY_VERSION_HEX >= 0x030300A0
        else if (Py_TYPE(ev) == (PyTypeObject*)PyExc_StopIteration) {
            value = ((PyStopIterationObject *)ev)->value;
            Py_INCREF(value);
            Py_DECREF(ev);
        }
#endif
        else if (unlikely(PyTuple_Check(ev))) {
            if (PyTuple_GET_SIZE(ev) >= 1) {
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
                value = PyTuple_GET_ITEM(ev, 0);
                Py_INCREF(value);
#else
                value = PySequence_ITEM(ev, 0);
#endif
            } else {
                Py_INCREF(Py_None);
                value = Py_None;
            }
            Py_DECREF(ev);
        }
        else if (!__Pyx_TypeCheck(ev, (PyTypeObject*)PyExc_StopIteration)) {
            value = ev;
        }
        if (likely(value)) {
            Py_XDECREF(tb);
            Py_DECREF(et);
            *pvalue = value;
            return 0;
        }
    } else if (!__Pyx_PyErr_GivenExceptionMatches(et, PyExc_StopIteration)) {
        __Pyx_ErrRestore(et, ev, tb);
        return -1;
    }
    PyErr_NormalizeException(&et, &ev, &tb);
    if (unlikely(!PyObject_TypeCheck(ev, (PyTypeObject*)PyExc_StopIteration))) {
        __Pyx_ErrRestore(et, ev, tb);
        return -1;
    }
    Py_XDECREF(tb);
    Py_DECREF(et);
#if PY_VERSION_HEX >= 0x030300A0
    value = ((PyStopIterationObject *)ev)->value;
    Py_INCREF(value);
    Py_DECREF(ev);
#else
    {
        PyObject* args = __Pyx_PyObject_GetAttrStr(ev, __pyx_n_s_args);
        Py_DECREF(ev);
        if (likely(args)) {
            value = PySequence_GetItem(args, 0);
            Py_DECREF(args);
        }
        if (unlikely(!value)) {
            __Pyx_ErrRestore(NULL, NULL, NULL);
            Py_INCREF(Py_None);
            value = Py_None;
        }
    }
#endif
    *pvalue = value;
    return 0;
}
static CYTHON_INLINE
void __Pyx_Coroutine_ExceptionClear(__Pyx_ExcInfoStruct *exc_state) {
    PyObject *t, *v, *tb;
    t = exc_state->exc_type;
    v = exc_state->exc_value;
    tb = exc_state->exc_traceback;
    exc_state->exc_type = NULL;
    exc_state->exc_value = NULL;
    exc_state->exc_traceback = NULL;
    Py_XDECREF(t);
    Py_XDECREF(v);
    Py_XDECREF(tb);
}
#define __Pyx_Coroutine_AlreadyRunningError(gen)  (__Pyx__Coroutine_AlreadyRunningError(gen), (PyObject*)NULL)
static void __Pyx__Coroutine_AlreadyRunningError(CYTHON_UNUSED __pyx_CoroutineObject *gen) {
    const char *msg;
    if ((0)) {
    #ifdef __Pyx_Coroutine_USED
    } else if (__Pyx_Coroutine_Check((PyObject*)gen)) {
        msg = "coroutine already executing";
    #endif
    #ifdef __Pyx_AsyncGen_USED
    } else if (__Pyx_AsyncGen_CheckExact((PyObject*)gen)) {
        msg = "async generator already executing";
    #endif
    } else {
        msg = "generator already executing";
    }
    PyErr_SetString(PyExc_ValueError, msg);
}
#define __Pyx_Coroutine_NotStartedError(gen)  (__Pyx__Coroutine_NotStartedError(gen), (PyObject*)NULL)
static void __Pyx__Coroutine_NotStartedError(CYTHON_UNUSED PyObject *gen) {
    const char *msg;
    if ((0)) {
    #ifdef __Pyx_Coroutine_USED
    } else if (__Pyx_Coroutine_Check(gen)) {
        msg = "can't send non-None value to a just-started coroutine";
    #endif
    #ifdef __Pyx_AsyncGen_USED
    } else if (__Pyx_AsyncGen_CheckExact(gen)) {
        msg = "can't send non-None value to a just-started async generator";
    #endif
    } else {
        msg = "can't send non-None value to a just-started generator";
    }
    PyErr_SetString(PyExc_TypeError, msg);
}
#define __Pyx_Coroutine_AlreadyTerminatedError(gen, value, closing)  (__Pyx__Coroutine_AlreadyTerminatedError(gen, value, closing), (PyObject*)NULL)
static void __Pyx__Coroutine_AlreadyTerminatedError(CYTHON_UNUSED PyObject *gen, PyObject *value, CYTHON_UNUSED int closing) {
    #ifdef __Pyx_Coroutine_USED
    if (!closing && __Pyx_Coroutine_Check(gen)) {
        PyErr_SetString(PyExc_RuntimeError, "cannot reuse already awaited coroutine");
    } else
    #endif
    if (value) {
        #ifdef __Pyx_AsyncGen_USED
        if (__Pyx_AsyncGen_CheckExact(gen))
            PyErr_SetNone(__Pyx_PyExc_StopAsyncIteration);
        else
        #endif
        PyErr_SetNone(PyExc_StopIteration);
    }
}
static
PyObject *__Pyx_Coroutine_SendEx(__pyx_CoroutineObject *self, PyObject *value, int closing) {
    __Pyx_PyThreadState_declare
    PyThreadState *tstate;
    __Pyx_ExcInfoStruct *exc_state;
    PyObject *retval;
    assert(!self->is_running);
    if (unlikely(self->resume_label == 0)) {
        if (unlikely(value && value != Py_None)) {
            return __Pyx_Coroutine_NotStartedError((PyObject*)self);
        }
    }
    if (unlikely(self->resume_label == -1)) {
        return __Pyx_Coroutine_AlreadyTerminatedError((PyObject*)self, value, closing);
    }
#if CYTHON_FAST_THREAD_STATE
    __Pyx_PyThreadState_assign
    tstate = __pyx_tstate;
#else
    tstate = __Pyx_PyThreadState_Current;
#endif
    exc_state = &self->gi_exc_state;
    if (exc_state->exc_type) {
        #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON
        #else
        if (exc_state->exc_traceback) {
            PyTracebackObject *tb = (PyTracebackObject *) exc_state->exc_traceback;
            PyFrameObject *f = tb->tb_frame;
            assert(f->f_back == NULL);
            #if PY_VERSION_HEX >= 0x030B00A1
            f->f_back = PyThreadState_GetFrame(tstate);
            #else
            Py_XINCREF(tstate->frame);
            f->f_back = tstate->frame;
            #endif
        }
        #endif
    }
#if CYTHON_USE_EXC_INFO_STACK
    exc_state->previous_item = tstate->exc_info;
    tstate->exc_info = exc_state;
#else
    if (exc_state->exc_type) {
        __Pyx_ExceptionSwap(&exc_state->exc_type, &exc_state->exc_value, &exc_state->exc_traceback);
    } else {
        __Pyx_Coroutine_ExceptionClear(exc_state);
        __Pyx_ExceptionSave(&exc_state->exc_type, &exc_state->exc_value, &exc_state->exc_traceback);
    }
#endif
    self->is_running = 1;
    retval = self->body((PyObject *) self, tstate, value);
    self->is_running = 0;
#if CYTHON_USE_EXC_INFO_STACK
    exc_state = &self->gi_exc_state;
    tstate->exc_info = exc_state->previous_item;
    exc_state->previous_item = NULL;
    __Pyx_Coroutine_ResetFrameBackpointer(exc_state);
#endif
    return retval;
}
static CYTHON_INLINE void __Pyx_Coroutine_ResetFrameBackpointer(__Pyx_ExcInfoStruct *exc_state) {
    PyObject *exc_tb = exc_state->exc_traceback;
    if (likely(exc_tb)) {
#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON
#else
        PyTracebackObject *tb = (PyTracebackObject *) exc_tb;
        PyFrameObject *f = tb->tb_frame;
        Py_CLEAR(f->f_back);
#endif
    }
}
static CYTHON_INLINE
PyObject *__Pyx_Coroutine_MethodReturn(CYTHON_UNUSED PyObject* gen, PyObject *retval) {
    if (unlikely(!retval)) {
        __Pyx_PyThreadState_declare
        __Pyx_PyThreadState_assign
        if (!__Pyx_PyErr_Occurred()) {
            PyObject *exc = PyExc_StopIteration;
            #ifdef __Pyx_AsyncGen_USED
            if (__Pyx_AsyncGen_CheckExact(gen))
                exc = __Pyx_PyExc_StopAsyncIteration;
            #endif
            __Pyx_PyErr_SetNone(exc);
        }
    }
    return retval;
}
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03030000 && (defined(__linux__) || PY_VERSION_HEX >= 0x030600B3)
static CYTHON_INLINE
PyObject *__Pyx_PyGen_Send(PyGenObject *gen, PyObject *arg) {
#if PY_VERSION_HEX <= 0x030A00A1
    return _PyGen_Send(gen, arg);
#else
    PyObject *result;
    if (PyIter_Send((PyObject*)gen, arg ? arg : Py_None, &result) == PYGEN_RETURN) {
        if (PyAsyncGen_CheckExact(gen)) {
            assert(result == Py_None);
            PyErr_SetNone(PyExc_StopAsyncIteration);
        }
        else if (result == Py_None) {
            PyErr_SetNone(PyExc_StopIteration);
        }
        else {
            _PyGen_SetStopIterationValue(result);
        }
        Py_CLEAR(result);
    }
    return result;
#endif
}
#endif
static CYTHON_INLINE
PyObject *__Pyx_Coroutine_FinishDelegation(__pyx_CoroutineObject *gen) {
    PyObject *ret;
    PyObject *val = NULL;
    __Pyx_Coroutine_Undelegate(gen);
    __Pyx_PyGen__FetchStopIterationValue(__Pyx_PyThreadState_Current, &val);
    ret = __Pyx_Coroutine_SendEx(gen, val, 0);
    Py_XDECREF(val);
    return ret;
}
static PyObject *__Pyx_Coroutine_Send(PyObject *self, PyObject *value) {
    PyObject *retval;
    __pyx_CoroutineObject *gen = (__pyx_CoroutineObject*) self;
    PyObject *yf = gen->yieldfrom;
    if (unlikely(gen->is_running))
        return __Pyx_Coroutine_AlreadyRunningError(gen);
    if (yf) {
        PyObject *ret;
        gen->is_running = 1;
        #ifdef __Pyx_Generator_USED
        if (__Pyx_Generator_CheckExact(yf)) {
            ret = __Pyx_Coroutine_Send(yf, value);
        } else
        #endif
        #ifdef __Pyx_Coroutine_USED
        if (__Pyx_Coroutine_Check(yf)) {
            ret = __Pyx_Coroutine_Send(yf, value);
        } else
        #endif
        #ifdef __Pyx_AsyncGen_USED
        if (__pyx_PyAsyncGenASend_CheckExact(yf)) {
            ret = __Pyx_async_gen_asend_send(yf, value);
        } else
        #endif
        #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03030000 && (defined(__linux__) || PY_VERSION_HEX >= 0x030600B3)
        if (PyGen_CheckExact(yf)) {
            ret = __Pyx_PyGen_Send((PyGenObject*)yf, value == Py_None ? NULL : value);
        } else
        #endif
        #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03050000 && defined(PyCoro_CheckExact) && (defined(__linux__) || PY_VERSION_HEX >= 0x030600B3)
        if (PyCoro_CheckExact(yf)) {
            ret = __Pyx_PyGen_Send((PyGenObject*)yf, value == Py_None ? NULL : value);
        } else
        #endif
        {
            if (value == Py_None)
                ret = Py_TYPE(yf)->tp_iternext(yf);
            else
                ret = __Pyx_PyObject_CallMethod1(yf, __pyx_n_s_send, value);
        }
        gen->is_running = 0;
        if (likely(ret)) {
            return ret;
        }
        retval = __Pyx_Coroutine_FinishDelegation(gen);
    } else {
        retval = __Pyx_Coroutine_SendEx(gen, value, 0);
    }
    return __Pyx_Coroutine_MethodReturn(self, retval);
}
static int __Pyx_Coroutine_CloseIter(__pyx_CoroutineObject *gen, PyObject *yf) {
    PyObject *retval = NULL;
    int err = 0;
    #ifdef __Pyx_Generator_USED
    if (__Pyx_Generator_CheckExact(yf)) {
        retval = __Pyx_Coroutine_Close(yf);
        if (!retval)
            return -1;
    } else
    #endif
    #ifdef __Pyx_Coroutine_USED
    if (__Pyx_Coroutine_Check(yf)) {
        retval = __Pyx_Coroutine_Close(yf);
        if (!retval)
            return -1;
    } else
    if (__Pyx_CoroutineAwait_CheckExact(yf)) {
        retval = __Pyx_CoroutineAwait_Close((__pyx_CoroutineAwaitObject*)yf, NULL);
        if (!retval)
            return -1;
    } else
    #endif
    #ifdef __Pyx_AsyncGen_USED
    if (__pyx_PyAsyncGenASend_CheckExact(yf)) {
        retval = __Pyx_async_gen_asend_close(yf, NULL);
    } else
    if (__pyx_PyAsyncGenAThrow_CheckExact(yf)) {
        retval = __Pyx_async_gen_athrow_close(yf, NULL);
    } else
    #endif
    {
        PyObject *meth;
        gen->is_running = 1;
        meth = __Pyx_PyObject_GetAttrStr(yf, __pyx_n_s_close);
        if (unlikely(!meth)) {
            if (!PyErr_ExceptionMatches(PyExc_AttributeError)) {
                PyErr_WriteUnraisable(yf);
            }
            PyErr_Clear();
        } else {
            retval = PyObject_CallFunction(meth, NULL);
            Py_DECREF(meth);
            if (!retval)
                err = -1;
        }
        gen->is_running = 0;
    }
    Py_XDECREF(retval);
    return err;
}
static PyObject *__Pyx_Generator_Next(PyObject *self) {
    __pyx_CoroutineObject *gen = (__pyx_CoroutineObject*) self;
    PyObject *yf = gen->yieldfrom;
    if (unlikely(gen->is_running))
        return __Pyx_Coroutine_AlreadyRunningError(gen);
    if (yf) {
        PyObject *ret;
        gen->is_running = 1;
        #ifdef __Pyx_Generator_USED
        if (__Pyx_Generator_CheckExact(yf)) {
            ret = __Pyx_Generator_Next(yf);
        } else
        #endif
        #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03030000 && (defined(__linux__) || PY_VERSION_HEX >= 0x030600B3)
        if (PyGen_CheckExact(yf)) {
            ret = __Pyx_PyGen_Send((PyGenObject*)yf, NULL);
        } else
        #endif
        #ifdef __Pyx_Coroutine_USED
        if (__Pyx_Coroutine_Check(yf)) {
            ret = __Pyx_Coroutine_Send(yf, Py_None);
        } else
        #endif
            ret = Py_TYPE(yf)->tp_iternext(yf);
        gen->is_running = 0;
        if (likely(ret)) {
            return ret;
        }
        return __Pyx_Coroutine_FinishDelegation(gen);
    }
    return __Pyx_Coroutine_SendEx(gen, Py_None, 0);
}
static PyObject *__Pyx_Coroutine_Close_Method(PyObject *self, CYTHON_UNUSED PyObject *arg) {
    return __Pyx_Coroutine_Close(self);
}
static PyObject *__Pyx_Coroutine_Close(PyObject *self) {
    __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self;
    PyObject *retval, *raised_exception;
    PyObject *yf = gen->yieldfrom;
    int err = 0;
    if (unlikely(gen->is_running))
        return __Pyx_Coroutine_AlreadyRunningError(gen);
    if (yf) {
        Py_INCREF(yf);
        err = __Pyx_Coroutine_CloseIter(gen, yf);
        __Pyx_Coroutine_Undelegate(gen);
        Py_DECREF(yf);
    }
    if (err == 0)
        PyErr_SetNone(PyExc_GeneratorExit);
    retval = __Pyx_Coroutine_SendEx(gen, NULL, 1);
    if (unlikely(retval)) {
        const char *msg;
        Py_DECREF(retval);
        if ((0)) {
        #ifdef __Pyx_Coroutine_USED
        } else if (__Pyx_Coroutine_Check(self)) {
            msg = "coroutine ignored GeneratorExit";
        #endif
        #ifdef __Pyx_AsyncGen_USED
        } else if (__Pyx_AsyncGen_CheckExact(self)) {
#if PY_VERSION_HEX < 0x03060000
            msg = "async generator ignored GeneratorExit - might require Python 3.6+ finalisation (PEP 525)";
#else
            msg = "async generator ignored GeneratorExit";
#endif
        #endif
        } else {
            msg = "generator ignored GeneratorExit";
        }
        PyErr_SetString(PyExc_RuntimeError, msg);
        return NULL;
    }
    raised_exception = PyErr_Occurred();
    if (likely(!raised_exception || __Pyx_PyErr_GivenExceptionMatches2(raised_exception, PyExc_GeneratorExit, PyExc_StopIteration))) {
        if (raised_exception) PyErr_Clear();
        Py_INCREF(Py_None);
        return Py_None;
    }
    return NULL;
}
static PyObject *__Pyx__Coroutine_Throw(PyObject *self, PyObject *typ, PyObject *val, PyObject *tb,
                                        PyObject *args, int close_on_genexit) {
    __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self;
    PyObject *yf = gen->yieldfrom;
    if (unlikely(gen->is_running))
        return __Pyx_Coroutine_AlreadyRunningError(gen);
    if (yf) {
        PyObject *ret;
        Py_INCREF(yf);
        if (__Pyx_PyErr_GivenExceptionMatches(typ, PyExc_GeneratorExit) && close_on_genexit) {
            int err = __Pyx_Coroutine_CloseIter(gen, yf);
            Py_DECREF(yf);
            __Pyx_Coroutine_Undelegate(gen);
            if (err < 0)
                return __Pyx_Coroutine_MethodReturn(self, __Pyx_Coroutine_SendEx(gen, NULL, 0));
            goto throw_here;
        }
        gen->is_running = 1;
        if (0
        #ifdef __Pyx_Generator_USED
            || __Pyx_Generator_CheckExact(yf)
        #endif
        #ifdef __Pyx_Coroutine_USED
            || __Pyx_Coroutine_Check(yf)
        #endif
            ) {
            ret = __Pyx__Coroutine_Throw(yf, typ, val, tb, args, close_on_genexit);
        #ifdef __Pyx_Coroutine_USED
        } else if (__Pyx_CoroutineAwait_CheckExact(yf)) {
            ret = __Pyx__Coroutine_Throw(((__pyx_CoroutineAwaitObject*)yf)->coroutine, typ, val, tb, args, close_on_genexit);
        #endif
        } else {
            PyObject *meth = __Pyx_PyObject_GetAttrStr(yf, __pyx_n_s_throw);
            if (unlikely(!meth)) {
                Py_DECREF(yf);
                if (!PyErr_ExceptionMatches(PyExc_AttributeError)) {
                    gen->is_running = 0;
                    return NULL;
                }
                PyErr_Clear();
                __Pyx_Coroutine_Undelegate(gen);
                gen->is_running = 0;
                goto throw_here;
            }
            if (likely(args)) {
                ret = PyObject_CallObject(meth, args);
            } else {
                ret = PyObject_CallFunctionObjArgs(meth, typ, val, tb, NULL);
            }
            Py_DECREF(meth);
        }
        gen->is_running = 0;
        Py_DECREF(yf);
        if (!ret) {
            ret = __Pyx_Coroutine_FinishDelegation(gen);
        }
        return __Pyx_Coroutine_MethodReturn(self, ret);
    }
throw_here:
    __Pyx_Raise(typ, val, tb, NULL);
    return __Pyx_Coroutine_MethodReturn(self, __Pyx_Coroutine_SendEx(gen, NULL, 0));
}
static PyObject *__Pyx_Coroutine_Throw(PyObject *self, PyObject *args) {
    PyObject *typ;
    PyObject *val = NULL;
    PyObject *tb = NULL;
    if (!PyArg_UnpackTuple(args, (char *)"throw", 1, 3, &typ, &val, &tb))
        return NULL;
    return __Pyx__Coroutine_Throw(self, typ, val, tb, args, 1);
}
static CYTHON_INLINE int __Pyx_Coroutine_traverse_excstate(__Pyx_ExcInfoStruct *exc_state, visitproc visit, void *arg) {
    Py_VISIT(exc_state->exc_type);
    Py_VISIT(exc_state->exc_value);
    Py_VISIT(exc_state->exc_traceback);
    return 0;
}
static int __Pyx_Coroutine_traverse(__pyx_CoroutineObject *gen, visitproc visit, void *arg) {
    Py_VISIT(gen->closure);
    Py_VISIT(gen->classobj);
    Py_VISIT(gen->yieldfrom);
    return __Pyx_Coroutine_traverse_excstate(&gen->gi_exc_state, visit, arg);
}
static int __Pyx_Coroutine_clear(PyObject *self) {
    __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self;
    Py_CLEAR(gen->closure);
    Py_CLEAR(gen->classobj);
    Py_CLEAR(gen->yieldfrom);
    __Pyx_Coroutine_ExceptionClear(&gen->gi_exc_state);
#ifdef __Pyx_AsyncGen_USED
    if (__Pyx_AsyncGen_CheckExact(self)) {
        Py_CLEAR(((__pyx_PyAsyncGenObject*)gen)->ag_finalizer);
    }
#endif
    Py_CLEAR(gen->gi_code);
    Py_CLEAR(gen->gi_frame);
    Py_CLEAR(gen->gi_name);
    Py_CLEAR(gen->gi_qualname);
    Py_CLEAR(gen->gi_modulename);
    return 0;
}
static void __Pyx_Coroutine_dealloc(PyObject *self) {
    __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self;
    PyObject_GC_UnTrack(gen);
    if (gen->gi_weakreflist != NULL)
        PyObject_ClearWeakRefs(self);
    if (gen->resume_label >= 0) {
        PyObject_GC_Track(self);
#if PY_VERSION_HEX >= 0x030400a1 && CYTHON_USE_TP_FINALIZE
        if (PyObject_CallFinalizerFromDealloc(self))
#else
        Py_TYPE(gen)->tp_del(self);
        if (Py_REFCNT(self) > 0)
#endif
        {
            return;
        }
        PyObject_GC_UnTrack(self);
    }
#ifdef __Pyx_AsyncGen_USED
    if (__Pyx_AsyncGen_CheckExact(self)) {
        /* We have to handle this case for asynchronous generators
           right here, because this code has to be between UNTRACK
           and GC_Del. */
        Py_CLEAR(((__pyx_PyAsyncGenObject*)self)->ag_finalizer);
    }
#endif
    __Pyx_Coroutine_clear(self);
    PyObject_GC_Del(gen);
}
static void __Pyx_Coroutine_del(PyObject *self) {
    PyObject *error_type, *error_value, *error_traceback;
    __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self;
    __Pyx_PyThreadState_declare
    if (gen->resume_label < 0) {
        return;
    }
#if !CYTHON_USE_TP_FINALIZE
    assert(self->ob_refcnt == 0);
    __Pyx_SET_REFCNT(self, 1);
#endif
    __Pyx_PyThreadState_assign
    __Pyx_ErrFetch(&error_type, &error_value, &error_traceback);
#ifdef __Pyx_AsyncGen_USED
    if (__Pyx_AsyncGen_CheckExact(self)) {
        __pyx_PyAsyncGenObject *agen = (__pyx_PyAsyncGenObject*)self;
        PyObject *finalizer = agen->ag_finalizer;
        if (finalizer && !agen->ag_closed) {
            PyObject *res = __Pyx_PyObject_CallOneArg(finalizer, self);
            if (unlikely(!res)) {
                PyErr_WriteUnraisable(self);
            } else {
                Py_DECREF(res);
            }
            __Pyx_ErrRestore(error_type, error_value, error_traceback);
            return;
        }
    }
#endif
    if (unlikely(gen->resume_label == 0 && !error_value)) {
#ifdef __Pyx_Coroutine_USED
#ifdef __Pyx_Generator_USED
    if (!__Pyx_Generator_CheckExact(self))
#endif
        {
        PyObject_GC_UnTrack(self);
#if PY_MAJOR_VERSION >= 3  || defined(PyErr_WarnFormat)
        if (unlikely(PyErr_WarnFormat(PyExc_RuntimeWarning, 1, "coroutine '%.50S' was never awaited", gen->gi_qualname) < 0))
            PyErr_WriteUnraisable(self);
#else
        {PyObject *msg;
        char *cmsg;
        #if CYTHON_COMPILING_IN_PYPY
        msg = NULL;
        cmsg = (char*) "coroutine was never awaited";
        #else
        char *cname;
        PyObject *qualname;
        qualname = gen->gi_qualname;
        cname = PyString_AS_STRING(qualname);
        msg = PyString_FromFormat("coroutine '%.50s' was never awaited", cname);
        if (unlikely(!msg)) {
            PyErr_Clear();
            cmsg = (char*) "coroutine was never awaited";
        } else {
            cmsg = PyString_AS_STRING(msg);
        }
        #endif
        if (unlikely(PyErr_WarnEx(PyExc_RuntimeWarning, cmsg, 1) < 0))
            PyErr_WriteUnraisable(self);
        Py_XDECREF(msg);}
#endif
        PyObject_GC_Track(self);
        }
#endif
    } else {
        PyObject *res = __Pyx_Coroutine_Close(self);
        if (unlikely(!res)) {
            if (PyErr_Occurred())
                PyErr_WriteUnraisable(self);
        } else {
            Py_DECREF(res);
        }
    }
    __Pyx_ErrRestore(error_type, error_value, error_traceback);
#if !CYTHON_USE_TP_FINALIZE
    assert(Py_REFCNT(self) > 0);
    if (--self->ob_refcnt == 0) {
        return;
    }
    {
        Py_ssize_t refcnt = Py_REFCNT(self);
        _Py_NewReference(self);
        __Pyx_SET_REFCNT(self, refcnt);
    }
#if CYTHON_COMPILING_IN_CPYTHON
    assert(PyType_IS_GC(Py_TYPE(self)) &&
           _Py_AS_GC(self)->gc.gc_refs != _PyGC_REFS_UNTRACKED);
    _Py_DEC_REFTOTAL;
#endif
#ifdef COUNT_ALLOCS
    --Py_TYPE(self)->tp_frees;
    --Py_TYPE(self)->tp_allocs;
#endif
#endif
}
static PyObject *
__Pyx_Coroutine_get_name(__pyx_CoroutineObject *self, CYTHON_UNUSED void *context)
{
    PyObject *name = self->gi_name;
    if (unlikely(!name)) name = Py_None;
    Py_INCREF(name);
    return name;
}
static int
__Pyx_Coroutine_set_name(__pyx_CoroutineObject *self, PyObject *value, CYTHON_UNUSED void *context)
{
    PyObject *tmp;
#if PY_MAJOR_VERSION >= 3
    if (unlikely(value == NULL || !PyUnicode_Check(value)))
#else
    if (unlikely(value == NULL || !PyString_Check(value)))
#endif
    {
        PyErr_SetString(PyExc_TypeError,
                        "__name__ must be set to a string object");
        return -1;
    }
    tmp = self->gi_name;
    Py_INCREF(value);
    self->gi_name = value;
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_Coroutine_get_qualname(__pyx_CoroutineObject *self, CYTHON_UNUSED void *context)
{
    PyObject *name = self->gi_qualname;
    if (unlikely(!name)) name = Py_None;
    Py_INCREF(name);
    return name;
}
static int
__Pyx_Coroutine_set_qualname(__pyx_CoroutineObject *self, PyObject *value, CYTHON_UNUSED void *context)
{
    PyObject *tmp;
#if PY_MAJOR_VERSION >= 3
    if (unlikely(value == NULL || !PyUnicode_Check(value)))
#else
    if (unlikely(value == NULL || !PyString_Check(value)))
#endif
    {
        PyErr_SetString(PyExc_TypeError,
                        "__qualname__ must be set to a string object");
        return -1;
    }
    tmp = self->gi_qualname;
    Py_INCREF(value);
    self->gi_qualname = value;
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_Coroutine_get_frame(__pyx_CoroutineObject *self, CYTHON_UNUSED void *context)
{
    PyObject *frame = self->gi_frame;
    if (!frame) {
        if (unlikely(!self->gi_code)) {
            Py_RETURN_NONE;
        }
        frame = (PyObject *) PyFrame_New(
            PyThreadState_Get(),            /*PyThreadState *tstate,*/
            (PyCodeObject*) self->gi_code,  /*PyCodeObject *code,*/
            __pyx_d,                 /*PyObject *globals,*/
            0                               /*PyObject *locals*/
        );
        if (unlikely(!frame))
            return NULL;
        self->gi_frame = frame;
    }
    Py_INCREF(frame);
    return frame;
}
static __pyx_CoroutineObject *__Pyx__Coroutine_New(
            PyTypeObject* type, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure,
            PyObject *name, PyObject *qualname, PyObject *module_name) {
    __pyx_CoroutineObject *gen = PyObject_GC_New(__pyx_CoroutineObject, type);
    if (unlikely(!gen))
        return NULL;
    return __Pyx__Coroutine_NewInit(gen, body, code, closure, name, qualname, module_name);
}
static __pyx_CoroutineObject *__Pyx__Coroutine_NewInit(
            __pyx_CoroutineObject *gen, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure,
            PyObject *name, PyObject *qualname, PyObject *module_name) {
    gen->body = body;
    gen->closure = closure;
    Py_XINCREF(closure);
    gen->is_running = 0;
    gen->resume_label = 0;
    gen->classobj = NULL;
    gen->yieldfrom = NULL;
    gen->gi_exc_state.exc_type = NULL;
    gen->gi_exc_state.exc_value = NULL;
    gen->gi_exc_state.exc_traceback = NULL;
#if CYTHON_USE_EXC_INFO_STACK
    gen->gi_exc_state.previous_item = NULL;
#endif
    gen->gi_weakreflist = NULL;
    Py_XINCREF(qualname);
    gen->gi_qualname = qualname;
    Py_XINCREF(name);
    gen->gi_name = name;
    Py_XINCREF(module_name);
    gen->gi_modulename = module_name;
    Py_XINCREF(code);
    gen->gi_code = code;
    gen->gi_frame = NULL;
    PyObject_GC_Track(gen);
    return gen;
}

/* PatchModuleWithCoroutine */
  static PyObject* __Pyx_Coroutine_patch_module(PyObject* module, const char* py_code) {
#if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED)
    int result;
    PyObject *globals, *result_obj;
    globals = PyDict_New();  if (unlikely(!globals)) goto ignore;
    result = PyDict_SetItemString(globals, "_cython_coroutine_type",
    #ifdef __Pyx_Coroutine_USED
        (PyObject*)__pyx_CoroutineType);
    #else
        Py_None);
    #endif
    if (unlikely(result < 0)) goto ignore;
    result = PyDict_SetItemString(globals, "_cython_generator_type",
    #ifdef __Pyx_Generator_USED
        (PyObject*)__pyx_GeneratorType);
    #else
        Py_None);
    #endif
    if (unlikely(result < 0)) goto ignore;
    if (unlikely(PyDict_SetItemString(globals, "_module", module) < 0)) goto ignore;
    if (unlikely(PyDict_SetItemString(globals, "__builtins__", __pyx_b) < 0)) goto ignore;
    result_obj = PyRun_String(py_code, Py_file_input, globals, globals);
    if (unlikely(!result_obj)) goto ignore;
    Py_DECREF(result_obj);
    Py_DECREF(globals);
    return module;
ignore:
    Py_XDECREF(globals);
    PyErr_WriteUnraisable(module);
    if (unlikely(PyErr_WarnEx(PyExc_RuntimeWarning, "Cython module failed to patch module with custom type", 1) < 0)) {
        Py_DECREF(module);
        module = NULL;
    }
#else
    py_code++;
#endif
    return module;
}

/* PatchGeneratorABC */
  #ifndef CYTHON_REGISTER_ABCS
#define CYTHON_REGISTER_ABCS 1
#endif
#if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED)
static PyObject* __Pyx_patch_abc_module(PyObject *module);
static PyObject* __Pyx_patch_abc_module(PyObject *module) {
    module = __Pyx_Coroutine_patch_module(
        module, ""
"if _cython_generator_type is not None:\n"
"    try: Generator = _module.Generator\n"
"    except AttributeError: pass\n"
"    else: Generator.register(_cython_generator_type)\n"
"if _cython_coroutine_type is not None:\n"
"    try: Coroutine = _module.Coroutine\n"
"    except AttributeError: pass\n"
"    else: Coroutine.register(_cython_coroutine_type)\n"
    );
    return module;
}
#endif
static int __Pyx_patch_abc(void) {
#if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED)
    static int abc_patched = 0;
    if (CYTHON_REGISTER_ABCS && !abc_patched) {
        PyObject *module;
        module = PyImport_ImportModule((PY_MAJOR_VERSION >= 3) ? "collections.abc" : "collections");
        if (!module) {
            PyErr_WriteUnraisable(NULL);
            if (unlikely(PyErr_WarnEx(PyExc_RuntimeWarning,
                    ((PY_MAJOR_VERSION >= 3) ?
                        "Cython module failed to register with collections.abc module" :
                        "Cython module failed to register with collections module"), 1) < 0)) {
                return -1;
            }
        } else {
            module = __Pyx_patch_abc_module(module);
            abc_patched = 1;
            if (unlikely(!module))
                return -1;
            Py_DECREF(module);
        }
        module = PyImport_ImportModule("backports_abc");
        if (module) {
            module = __Pyx_patch_abc_module(module);
            Py_XDECREF(module);
        }
        if (!module) {
            PyErr_Clear();
        }
    }
#else
    if ((0)) __Pyx_Coroutine_patch_module(NULL, NULL);
#endif
    return 0;
}

/* Generator */
  static PyMethodDef __pyx_Generator_methods[] = {
    {"send", (PyCFunction) __Pyx_Coroutine_Send, METH_O,
     (char*) PyDoc_STR("send(arg) -> send 'arg' into generator,\nreturn next yielded value or raise StopIteration.")},
    {"throw", (PyCFunction) __Pyx_Coroutine_Throw, METH_VARARGS,
     (char*) PyDoc_STR("throw(typ[,val[,tb]]) -> raise exception in generator,\nreturn next yielded value or raise StopIteration.")},
    {"close", (PyCFunction) __Pyx_Coroutine_Close_Method, METH_NOARGS,
     (char*) PyDoc_STR("close() -> raise GeneratorExit inside generator.")},
    {0, 0, 0, 0}
};
static PyMemberDef __pyx_Generator_memberlist[] = {
    {(char *) "gi_running", T_BOOL, offsetof(__pyx_CoroutineObject, is_running), READONLY, NULL},
    {(char*) "gi_yieldfrom", T_OBJECT, offsetof(__pyx_CoroutineObject, yieldfrom), READONLY,
     (char*) PyDoc_STR("object being iterated by 'yield from', or None")},
    {(char*) "gi_code", T_OBJECT, offsetof(__pyx_CoroutineObject, gi_code), READONLY, NULL},
    {0, 0, 0, 0, 0}
};
static PyGetSetDef __pyx_Generator_getsets[] = {
    {(char *) "__name__", (getter)__Pyx_Coroutine_get_name, (setter)__Pyx_Coroutine_set_name,
     (char*) PyDoc_STR("name of the generator"), 0},
    {(char *) "__qualname__", (getter)__Pyx_Coroutine_get_qualname, (setter)__Pyx_Coroutine_set_qualname,
     (char*) PyDoc_STR("qualified name of the generator"), 0},
    {(char *) "gi_frame", (getter)__Pyx_Coroutine_get_frame, NULL,
     (char*) PyDoc_STR("Frame of the generator"), 0},
    {0, 0, 0, 0, 0}
};
static PyTypeObject __pyx_GeneratorType_type = {
    PyVarObject_HEAD_INIT(0, 0)
    "generator",
    sizeof(__pyx_CoroutineObject),
    0,
    (destructor) __Pyx_Coroutine_dealloc,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_HAVE_FINALIZE,
    0,
    (traverseproc) __Pyx_Coroutine_traverse,
    0,
    0,
    offsetof(__pyx_CoroutineObject, gi_weakreflist),
    0,
    (iternextfunc) __Pyx_Generator_Next,
    __pyx_Generator_methods,
    __pyx_Generator_memberlist,
    __pyx_Generator_getsets,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
#if CYTHON_USE_TP_FINALIZE
    0,
#else
    __Pyx_Coroutine_del,
#endif
    0,
#if CYTHON_USE_TP_FINALIZE
    __Pyx_Coroutine_del,
#elif PY_VERSION_HEX >= 0x030400a1
    0,
#endif
#if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
    0,
#endif
#if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
    0,
#endif
#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
    0,
#endif
};
static int __pyx_Generator_init(void) {
    __pyx_GeneratorType_type.tp_getattro = __Pyx_PyObject_GenericGetAttrNoDict;
    __pyx_GeneratorType_type.tp_iter = PyObject_SelfIter;
    __pyx_GeneratorType = __Pyx_FetchCommonType(&__pyx_GeneratorType_type);
    if (unlikely(!__pyx_GeneratorType)) {
        return -1;
    }
    return 0;
}

/* CheckBinaryVersion */
  static int __Pyx_check_binary_version(void) {
    char ctversion[5];
    int same=1, i, found_dot;
    const char* rt_from_call = Py_GetVersion();
    PyOS_snprintf(ctversion, 5, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
    found_dot = 0;
    for (i = 0; i < 4; i++) {
        if (!ctversion[i]) {
            same = (rt_from_call[i] < '0' || rt_from_call[i] > '9');
            break;
        }
        if (rt_from_call[i] != ctversion[i]) {
            same = 0;
            break;
        }
    }
    if (!same) {
        char rtversion[5] = {'\0'};
        char message[200];
        for (i=0; i<4; ++i) {
            if (rt_from_call[i] == '.') {
                if (found_dot) break;
                found_dot = 1;
            } else if (rt_from_call[i] < '0' || rt_from_call[i] > '9') {
                break;
            }
            rtversion[i] = rt_from_call[i];
        }
        PyOS_snprintf(message, sizeof(message),
                      "compiletime version %s of module '%.100s' "
                      "does not match runtime version %s",
                      ctversion, __Pyx_MODULE_NAME, rtversion);
        return PyErr_WarnEx(NULL, message, 1);
    }
    return 0;
}

/* InitStrings */
  static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
    while (t->p) {
        #if PY_MAJOR_VERSION < 3
        if (t->is_unicode) {
            *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
        } else if (t->intern) {
            *t->p = PyString_InternFromString(t->s);
        } else {
            *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
        }
        #else
        if (t->is_unicode | t->is_str) {
            if (t->intern) {
                *t->p = PyUnicode_InternFromString(t->s);
            } else if (t->encoding) {
                *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
            } else {
                *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
            }
        } else {
            *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
        }
        #endif
        if (!*t->p)
            return -1;
        if (PyObject_Hash(*t->p) == -1)
            return -1;
        ++t;
    }
    return 0;
}

static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
    return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
}
static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) {
    Py_ssize_t ignore;
    return __Pyx_PyObject_AsStringAndSize(o, &ignore);
}
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
#if !CYTHON_PEP393_ENABLED
static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
    char* defenc_c;
    PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
    if (!defenc) return NULL;
    defenc_c = PyBytes_AS_STRING(defenc);
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
    {
        char* end = defenc_c + PyBytes_GET_SIZE(defenc);
        char* c;
        for (c = defenc_c; c < end; c++) {
            if ((unsigned char) (*c) >= 128) {
                PyUnicode_AsASCIIString(o);
                return NULL;
            }
        }
    }
#endif
    *length = PyBytes_GET_SIZE(defenc);
    return defenc_c;
}
#else
static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
    if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL;
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
    if (likely(PyUnicode_IS_ASCII(o))) {
        *length = PyUnicode_GET_LENGTH(o);
        return PyUnicode_AsUTF8(o);
    } else {
        PyUnicode_AsASCIIString(o);
        return NULL;
    }
#else
    return PyUnicode_AsUTF8AndSize(o, length);
#endif
}
#endif
#endif
static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
    if (
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
            __Pyx_sys_getdefaultencoding_not_ascii &&
#endif
            PyUnicode_Check(o)) {
        return __Pyx_PyUnicode_AsStringAndSize(o, length);
    } else
#endif
#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
    if (PyByteArray_Check(o)) {
        *length = PyByteArray_GET_SIZE(o);
        return PyByteArray_AS_STRING(o);
    } else
#endif
    {
        char* result;
        int r = PyBytes_AsStringAndSize(o, &result, length);
        if (unlikely(r < 0)) {
            return NULL;
        } else {
            return result;
        }
    }
}
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
   int is_true = x == Py_True;
   if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
   else return PyObject_IsTrue(x);
}
static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) {
    int retval;
    if (unlikely(!x)) return -1;
    retval = __Pyx_PyObject_IsTrue(x);
    Py_DECREF(x);
    return retval;
}
static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) {
#if PY_MAJOR_VERSION >= 3
    if (PyLong_Check(result)) {
        if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1,
                "__int__ returned non-int (type %.200s).  "
                "The ability to return an instance of a strict subclass of int "
                "is deprecated, and may be removed in a future version of Python.",
                Py_TYPE(result)->tp_name)) {
            Py_DECREF(result);
            return NULL;
        }
        return result;
    }
#endif
    PyErr_Format(PyExc_TypeError,
                 "__%.4s__ returned non-%.4s (type %.200s)",
                 type_name, type_name, Py_TYPE(result)->tp_name);
    Py_DECREF(result);
    return NULL;
}
static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) {
#if CYTHON_USE_TYPE_SLOTS
  PyNumberMethods *m;
#endif
  const char *name = NULL;
  PyObject *res = NULL;
#if PY_MAJOR_VERSION < 3
  if (likely(PyInt_Check(x) || PyLong_Check(x)))
#else
  if (likely(PyLong_Check(x)))
#endif
    return __Pyx_NewRef(x);
#if CYTHON_USE_TYPE_SLOTS
  m = Py_TYPE(x)->tp_as_number;
  #if PY_MAJOR_VERSION < 3
  if (m && m->nb_int) {
    name = "int";
    res = m->nb_int(x);
  }
  else if (m && m->nb_long) {
    name = "long";
    res = m->nb_long(x);
  }
  #else
  if (likely(m && m->nb_int)) {
    name = "int";
    res = m->nb_int(x);
  }
  #endif
#else
  if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) {
    res = PyNumber_Int(x);
  }
#endif
  if (likely(res)) {
#if PY_MAJOR_VERSION < 3
    if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) {
#else
    if (unlikely(!PyLong_CheckExact(res))) {
#endif
        return __Pyx_PyNumber_IntOrLongWrongResultType(res, name);
    }
  }
  else if (!PyErr_Occurred()) {
    PyErr_SetString(PyExc_TypeError,
                    "an integer is required");
  }
  return res;
}
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
  Py_ssize_t ival;
  PyObject *x;
#if PY_MAJOR_VERSION < 3
  if (likely(PyInt_CheckExact(b))) {
    if (sizeof(Py_ssize_t) >= sizeof(long))
        return PyInt_AS_LONG(b);
    else
        return PyInt_AsSsize_t(b);
  }
#endif
  if (likely(PyLong_CheckExact(b))) {
    #if CYTHON_USE_PYLONG_INTERNALS
    const digit* digits = ((PyLongObject*)b)->ob_digit;
    const Py_ssize_t size = Py_SIZE(b);
    if (likely(__Pyx_sst_abs(size) <= 1)) {
        ival = likely(size) ? digits[0] : 0;
        if (size == -1) ival = -ival;
        return ival;
    } else {
      switch (size) {
         case 2:
           if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -2:
           if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case 3:
           if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -3:
           if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case 4:
           if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -4:
           if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
      }
    }
    #endif
    return PyLong_AsSsize_t(b);
  }
  x = PyNumber_Index(b);
  if (!x) return -1;
  ival = PyInt_AsSsize_t(x);
  Py_DECREF(x);
  return ival;
}
static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject* o) {
  if (sizeof(Py_hash_t) == sizeof(Py_ssize_t)) {
    return (Py_hash_t) __Pyx_PyIndex_AsSsize_t(o);
#if PY_MAJOR_VERSION < 3
  } else if (likely(PyInt_CheckExact(o))) {
    return PyInt_AS_LONG(o);
#endif
  } else {
    Py_ssize_t ival;
    PyObject *x;
    x = PyNumber_Index(o);
    if (!x) return -1;
    ival = PyInt_AsLong(x);
    Py_DECREF(x);
    return ival;
  }
}
static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) {
  return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False);
}
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
    return PyInt_FromSize_t(ival);
}


#endif /* Py_PYTHON_H */
