AUTHORS.rst
CC.pts
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
pyproject.toml
setup.cfg
setup.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/gettingstarted.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/modules.rst
docs/references.rst
docs/scripts.rst
scripts/bonndit2mrtrix
scripts/bundle-filtering
scripts/csd-peaks
scripts/data2fodf
scripts/dtiselectvols
scripts/kurtosis
scripts/low-rank-k-approx
scripts/mtdeconv
scripts/peak-modelling
scripts/prob-tracking
scripts/stdeconv
src/bonndit/__init__.py
src/bonndit.egg-info/PKG-INFO
src/bonndit.egg-info/SOURCES.txt
src/bonndit.egg-info/dependency_links.txt
src/bonndit.egg-info/not-zip-safe
src/bonndit.egg-info/top_level.txt
src/bonndit/data/CC.pts
src/bonndit/data/__init__.py
src/bonndit/deconv/__init__.py
src/bonndit/deconv/base.py
src/bonndit/deconv/dki.py
src/bonndit/deconv/multivoxel.py
src/bonndit/deconv/shdeconv.py
src/bonndit/deconv/shoredeconv.py
src/bonndit/directions/__init__.pxd
src/bonndit/directions/__init__.py
src/bonndit/directions/__init__.pyx
src/bonndit/directions/csd_peaks.pyx
src/bonndit/directions/fodfapprox.pyx
src/bonndit/directions/sphere.npz
src/bonndit/directions/watsonfit.py
src/bonndit/filter/__init__.py
src/bonndit/filter/filter.pyx
src/bonndit/pmodels/__init__.py
src/bonndit/pmodels/means.pxd
src/bonndit/pmodels/means.pyx
src/bonndit/pmodels/model_avg.pyx
src/bonndit/tracking/ItoW.pxd
src/bonndit/tracking/ItoW.pyx
src/bonndit/tracking/__init__.py
src/bonndit/tracking/alignedDirection.pxd
src/bonndit/tracking/alignedDirection.pyx
src/bonndit/tracking/alignedDirection_struct.pyx
src/bonndit/tracking/integration.pxd
src/bonndit/tracking/integration.pyx
src/bonndit/tracking/interpolation.pxd
src/bonndit/tracking/interpolation.pyx
src/bonndit/tracking/stopping.pxd
src/bonndit/tracking/stopping.pyx
src/bonndit/tracking/tracking_prob.pyx
src/bonndit/tracking/kalman/__init__.py
src/bonndit/tracking/kalman/kalman.pxd
src/bonndit/tracking/kalman/kalman.pyx
src/bonndit/tracking/kalman/model.pxd
src/bonndit/tracking/kalman/model.pyx
src/bonndit/utilc/__init__.pxd
src/bonndit/utilc/__init__.py
src/bonndit/utilc/average.pyx
src/bonndit/utilc/blas_lapack.pxd
src/bonndit/utilc/blas_lapack.pyx
src/bonndit/utilc/cython_helpers.pxd
src/bonndit/utilc/cython_helpers.pyx
src/bonndit/utilc/hota.pxd
src/bonndit/utilc/hota.pyx
src/bonndit/utilc/lowrank.pxd
src/bonndit/utilc/lowrank.pyx
src/bonndit/utilc/penalty_spherical.pxd
src/bonndit/utilc/penalty_spherical.pyx
src/bonndit/utilc/structures.pxd
src/bonndit/utilc/structures.pyx
src/bonndit/utilc/trilinear.pxd
src/bonndit/utilc/trilinear.pyx
src/bonndit/utils/__init__.py
src/bonndit/utils/constants.py
src/bonndit/utils/dwmri.py
src/bonndit/utils/esh.py
src/bonndit/utils/fields.py
src/bonndit/utils/gradients.py
src/bonndit/utils/io.py
src/bonndit/utils/mmath.py
src/bonndit/utils/multivoxel.py
src/bonndit/utils/nrrd.py
src/bonndit/utils/shore.py
src/bonndit/utils/storage.py
src/bonndit/utils/tensor.py
src/bonndit/utils/vector.py
tests/__init__.py
tests/constants.py
tests/test_DkiFit.py
tests/test_DkiModel.py
tests/test_ShResponse.py
tests/test_ShResponseEstimator.py
tests/test_ShoreFitMt.py
tests/test_ShoreModelMt.py
tests/test_bonndit.py
tests/test_gradients.py
tests/test_io.py
tests/data/bvals
tests/data/bvecs
tests/data/data.nii.gz
tests/data/dti_FA.nii.gz
tests/data/dti_V1.nii.gz
tests/data/fast_pve_0.nii.gz
tests/data/fast_pve_1.nii.gz
tests/data/fast_pve_2.nii.gz
tests/data/mask.nii.gz
tests/data/sh_response_complete.npz
tests/data/shore_response_complete.npz
tests/data/results/cs_deconvolution/odf_hpsd_delta.nrrd
tests/data/results/cs_deconvolution/odf_hpsd_rank1.nrrd
tests/data/results/cs_deconvolution/odf_none_delta.nrrd
tests/data/results/cs_deconvolution/odf_none_rank1.nrrd
tests/data/results/cs_deconvolution/odf_nonneg_delta.nrrd
tests/data/results/cs_deconvolution/odf_nonneg_rank1.nrrd
tests/data/results/cs_deconvolution/response.npz
tests/data/results/cs_deconvolution/wm_hpsd_delta.nrrd
tests/data/results/cs_deconvolution/wm_hpsd_rank1.nrrd
tests/data/results/cs_deconvolution/wm_none_delta.nrrd
tests/data/results/cs_deconvolution/wm_none_rank1.nrrd
tests/data/results/cs_deconvolution/wm_nonneg_delta.nrrd
tests/data/results/cs_deconvolution/wm_nonneg_rank1.nrrd
tests/data/results/dki/da.nii
tests/data/results/dki/dm.nii
tests/data/results/dki/dr.nii
tests/data/results/dki/fa.nii
tests/data/results/dki/ka.nii
tests/data/results/dki/kappaAxial.nii
tests/data/results/dki/kappaDiamond.nii
tests/data/results/dki/kappaRadial.nii
tests/data/results/dki/km.nii
tests/data/results/dki/kr.nii
tests/data/results/dki/kurtosis_fit.npz
tests/data/results/kurtosis/da.nii
tests/data/results/kurtosis/dm.nii
tests/data/results/kurtosis/dr.nii
tests/data/results/kurtosis/fa.nii
tests/data/results/kurtosis/ka.nii
tests/data/results/kurtosis/kappaAxial.nii
tests/data/results/kurtosis/kappaDiamond.nii
tests/data/results/kurtosis/kappaRadial.nii
tests/data/results/kurtosis/km.nii
tests/data/results/kurtosis/kr.nii
tests/data/results/kurtosis/kurtosis_fit.nii
tests/data/results/shore_deconvolution/csf_hpsd_delta.nrrd
tests/data/results/shore_deconvolution/csf_hpsd_rank1.nrrd
tests/data/results/shore_deconvolution/csf_none_delta.nrrd
tests/data/results/shore_deconvolution/csf_none_rank1.nrrd
tests/data/results/shore_deconvolution/csf_nonneg_delta.nrrd
tests/data/results/shore_deconvolution/csf_nonneg_rank1.nrrd
tests/data/results/shore_deconvolution/gm_hpsd_delta.nrrd
tests/data/results/shore_deconvolution/gm_hpsd_rank1.nrrd
tests/data/results/shore_deconvolution/gm_none_delta.nrrd
tests/data/results/shore_deconvolution/gm_none_rank1.nrrd
tests/data/results/shore_deconvolution/gm_nonneg_delta.nrrd
tests/data/results/shore_deconvolution/gm_nonneg_rank1.nrrd
tests/data/results/shore_deconvolution/odf_hpsd_delta.nrrd
tests/data/results/shore_deconvolution/odf_hpsd_rank1.nrrd
tests/data/results/shore_deconvolution/odf_none_delta.nrrd
tests/data/results/shore_deconvolution/odf_none_rank1.nrrd
tests/data/results/shore_deconvolution/odf_nonneg_delta.nrrd
tests/data/results/shore_deconvolution/odf_nonneg_rank1.nrrd
tests/data/results/shore_deconvolution/response.npz
tests/data/results/shore_deconvolution/wm_hpsd_delta.nrrd
tests/data/results/shore_deconvolution/wm_hpsd_rank1.nrrd
tests/data/results/shore_deconvolution/wm_none_delta.nrrd
tests/data/results/shore_deconvolution/wm_none_rank1.nrrd
tests/data/results/shore_deconvolution/wm_nonneg_delta.nrrd
tests/data/results/shore_deconvolution/wm_nonneg_rank1.nrrd