LICENSE
README.md
pyproject.toml
src/boltzgen/__init__.py
src/boltzgen.egg-info/PKG-INFO
src/boltzgen.egg-info/SOURCES.txt
src/boltzgen.egg-info/dependency_links.txt
src/boltzgen.egg-info/entry_points.txt
src/boltzgen.egg-info/requires.txt
src/boltzgen.egg-info/top_level.txt
src/boltzgen/cli/__init__.py
src/boltzgen/cli/boltzgen.py
src/boltzgen/data/__init__.py
src/boltzgen/data/const.py
src/boltzgen/data/data.py
src/boltzgen/data/mol.py
src/boltzgen/data/pad.py
src/boltzgen/data/rmsd_computation.py
src/boltzgen/data/crop/__init__.py
src/boltzgen/data/crop/cropper.py
src/boltzgen/data/crop/multimer.py
src/boltzgen/data/feature/__init__.py
src/boltzgen/data/feature/featurizer.py
src/boltzgen/data/filter/__init__.py
src/boltzgen/data/filter/dynamic/__init__.py
src/boltzgen/data/filter/dynamic/confidence.py
src/boltzgen/data/filter/dynamic/date.py
src/boltzgen/data/filter/dynamic/error.py
src/boltzgen/data/filter/dynamic/filter.py
src/boltzgen/data/filter/dynamic/max_residues.py
src/boltzgen/data/filter/dynamic/min_protein_residues.py
src/boltzgen/data/filter/dynamic/pdb_id_txtfile.py
src/boltzgen/data/filter/dynamic/resolution.py
src/boltzgen/data/filter/dynamic/size.py
src/boltzgen/data/filter/static/__init__.py
src/boltzgen/data/filter/static/filter.py
src/boltzgen/data/filter/static/ligand.py
src/boltzgen/data/filter/static/polymer.py
src/boltzgen/data/parse/__init__.py
src/boltzgen/data/parse/a3m.py
src/boltzgen/data/parse/mmcif.py
src/boltzgen/data/parse/pdb_parser.py
src/boltzgen/data/parse/schema.py
src/boltzgen/data/sample/__init__.py
src/boltzgen/data/sample/cluster.py
src/boltzgen/data/sample/sampler.py
src/boltzgen/data/select/__init__.py
src/boltzgen/data/select/protein.py
src/boltzgen/data/select/selector.py
src/boltzgen/data/template/__init__.py
src/boltzgen/data/template/features.py
src/boltzgen/data/tokenize/__init__.py
src/boltzgen/data/tokenize/tokenizer.py
src/boltzgen/data/write/__init__.py
src/boltzgen/data/write/mmcif.py
src/boltzgen/data/write/pdb.py
src/boltzgen/model/__init__.py
src/boltzgen/model/layers/__init__.py
src/boltzgen/model/layers/attention.py
src/boltzgen/model/layers/confidence_utils.py
src/boltzgen/model/layers/dropout.py
src/boltzgen/model/layers/initialize.py
src/boltzgen/model/layers/miniformer.py
src/boltzgen/model/layers/outer_product_mean.py
src/boltzgen/model/layers/pair_averaging.py
src/boltzgen/model/layers/pairformer.py
src/boltzgen/model/layers/relative.py
src/boltzgen/model/layers/transition.py
src/boltzgen/model/layers/triangular.py
src/boltzgen/model/layers/triangular_attention/__init__.py
src/boltzgen/model/layers/triangular_attention/attention.py
src/boltzgen/model/layers/triangular_attention/primitives.py
src/boltzgen/model/layers/triangular_attention/utils.py
src/boltzgen/model/loss/__init__.py
src/boltzgen/model/loss/bfactor.py
src/boltzgen/model/loss/confidence.py
src/boltzgen/model/loss/diffusion.py
src/boltzgen/model/loss/distogram.py
src/boltzgen/model/loss/res_type.py
src/boltzgen/model/loss/validation.py
src/boltzgen/model/models/__init__.py
src/boltzgen/model/models/boltz.py
src/boltzgen/model/modules/__init__.py
src/boltzgen/model/modules/affinity.py
src/boltzgen/model/modules/confidence.py
src/boltzgen/model/modules/diffusion.py
src/boltzgen/model/modules/diffusion_conditioning.py
src/boltzgen/model/modules/encoders.py
src/boltzgen/model/modules/inverse_fold.py
src/boltzgen/model/modules/masker.py
src/boltzgen/model/modules/scatter_utils.py
src/boltzgen/model/modules/transformers.py
src/boltzgen/model/modules/trunk.py
src/boltzgen/model/modules/utils.py
src/boltzgen/model/optim/__init__.py
src/boltzgen/model/optim/ema.py
src/boltzgen/model/optim/scheduler.py
src/boltzgen/model/validation/design.py
src/boltzgen/model/validation/rcsb.py
src/boltzgen/model/validation/refolding.py
src/boltzgen/model/validation/validator.py
src/boltzgen/resources/main.py
src/boltzgen/resources/config/affinity.yaml
src/boltzgen/resources/config/analysis.yaml
src/boltzgen/resources/config/design.yaml
src/boltzgen/resources/config/filtering.yaml
src/boltzgen/resources/config/fold.yaml
src/boltzgen/resources/config/inverse_fold.yaml
src/boltzgen/resources/config/inverse_fold_only.yaml
src/boltzgen/resources/config/train/boltzgen.yaml
src/boltzgen/resources/config/train/boltzgen_small.yaml
src/boltzgen/resources/config/train/inverse_folding.yaml
src/boltzgen/task/__init__.py
src/boltzgen/task/task.py
src/boltzgen/task/analyze/analyze.py
src/boltzgen/task/analyze/analyze_utils.py
src/boltzgen/task/filter/__init__.py
src/boltzgen/task/filter/filter.py
src/boltzgen/task/filter/seqplot_utils.py
src/boltzgen/task/predict/__init__.py
src/boltzgen/task/predict/data_from_generated.py
src/boltzgen/task/predict/data_from_yaml.py
src/boltzgen/task/predict/loading_utils.py
src/boltzgen/task/predict/predict.py
src/boltzgen/task/predict/writer.py
src/boltzgen/task/train/__init__.py
src/boltzgen/task/train/data.py
src/boltzgen/task/train/train.py
src/boltzgen/utils/__init__.py
src/boltzgen/utils/pipeline_progress_bar.py
src/boltzgen/utils/quiet.py