LICENSE.txt
MANIFEST.in
README.md
setup.cfg
setup.py
bohra/ReRunSnpDetection.py
bohra/SnpDetection.py
bohra/Utils.py
bohra/__init__.py
bohra/bohra.py
bohra/version.py
bohra.egg-info/PKG-INFO
bohra.egg-info/SOURCES.txt
bohra.egg-info/dependency_links.txt
bohra.egg-info/entry_points.txt
bohra.egg-info/not-zip-safe
bohra.egg-info/requires.txt
bohra.egg-info/top_level.txt
bohra/templates/cluster.tmpl
bohra/templates/config_snippy.yaml
bohra/templates/index.html
bohra/tests/test.bed
bohra/tests/test.gbk
bohra/tests/test.tab
bohra/tests/test_bohra.py
bohra/tests/test_file.txt
bohra/utils/assemble.py
bohra/utils/assembly_combine.py
bohra/utils/assembly_stat.py
bohra/utils/bohra.smk
bohra/utils/collate_tomls.py
bohra/utils/combine_kraken.py
bohra/utils/combine_mlst.py
bohra/utils/combine_resistome.py
bohra/utils/combine_seqdata.py
bohra/utils/compile.py
bohra/utils/gubbins.py
bohra/utils/iqtree_generator.sh
bohra/utils/kraken.py
bohra/utils/mash.py
bohra/utils/mlst.py
bohra/utils/move_outputs.py
bohra/utils/pan_figure.py
bohra/utils/preview.py
bohra/utils/prokka.py
bohra/utils/resistome.py
bohra/utils/roary.py
bohra/utils/roary2svg.pl
bohra/utils/run_iqtree.py
bohra/utils/seqdata.py
bohra/utils/snippy.py
bohra/utils/snippy_core.py
bohra/utils/snippy_qc.py
bohra/utils/snp_dists.py
bohra/utils/tomls.py
bohra/utils/write_report.py