MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
src/blobtoolkit.egg-info/PKG-INFO
src/blobtoolkit.egg-info/SOURCES.txt
src/blobtoolkit.egg-info/dependency_links.txt
src/blobtoolkit.egg-info/entry_points.txt
src/blobtoolkit.egg-info/not-zip-safe
src/blobtoolkit.egg-info/requires.txt
src/blobtoolkit.egg-info/top_level.txt
src/blobtools/__init__.py
src/blobtools/__main__.py
src/blobtools/blobtools.py
src/blobtools/bin/blobtoolkit-api-linux
src/blobtools/bin/blobtoolkit-viewer-linux
src/blobtools/example/FXWY01/ERR1656467_cov.json
src/blobtools/example/FXWY01/ERR1656467_read_cov.json
src/blobtools/example/FXWY01/bestsumorder_class.json
src/blobtools/example/FXWY01/bestsumorder_class_cindex.json
src/blobtools/example/FXWY01/bestsumorder_class_positions.json
src/blobtools/example/FXWY01/bestsumorder_class_score.json
src/blobtools/example/FXWY01/bestsumorder_family.json
src/blobtools/example/FXWY01/bestsumorder_family_cindex.json
src/blobtools/example/FXWY01/bestsumorder_family_positions.json
src/blobtools/example/FXWY01/bestsumorder_family_score.json
src/blobtools/example/FXWY01/bestsumorder_genus.json
src/blobtools/example/FXWY01/bestsumorder_genus_cindex.json
src/blobtools/example/FXWY01/bestsumorder_genus_positions.json
src/blobtools/example/FXWY01/bestsumorder_genus_score.json
src/blobtools/example/FXWY01/bestsumorder_kingdom.json
src/blobtools/example/FXWY01/bestsumorder_kingdom_cindex.json
src/blobtools/example/FXWY01/bestsumorder_kingdom_positions.json
src/blobtools/example/FXWY01/bestsumorder_kingdom_score.json
src/blobtools/example/FXWY01/bestsumorder_order.json
src/blobtools/example/FXWY01/bestsumorder_order_cindex.json
src/blobtools/example/FXWY01/bestsumorder_order_positions.json
src/blobtools/example/FXWY01/bestsumorder_order_score.json
src/blobtools/example/FXWY01/bestsumorder_phylum.json
src/blobtools/example/FXWY01/bestsumorder_phylum_cindex.json
src/blobtools/example/FXWY01/bestsumorder_phylum_positions.json
src/blobtools/example/FXWY01/bestsumorder_phylum_score.json
src/blobtools/example/FXWY01/bestsumorder_positions.json
src/blobtools/example/FXWY01/bestsumorder_species.json
src/blobtools/example/FXWY01/bestsumorder_species_cindex.json
src/blobtools/example/FXWY01/bestsumorder_species_positions.json
src/blobtools/example/FXWY01/bestsumorder_species_score.json
src/blobtools/example/FXWY01/bestsumorder_superkingdom.json
src/blobtools/example/FXWY01/bestsumorder_superkingdom_cindex.json
src/blobtools/example/FXWY01/bestsumorder_superkingdom_positions.json
src/blobtools/example/FXWY01/bestsumorder_superkingdom_score.json
src/blobtools/example/FXWY01/eukaryota_odb9_busco.json
src/blobtools/example/FXWY01/gc.json
src/blobtools/example/FXWY01/identifiers.json
src/blobtools/example/FXWY01/length.json
src/blobtools/example/FXWY01/meta.json
src/blobtools/example/FXWY01/metazoa_odb9_busco.json
src/blobtools/example/FXWY01/ncount.json
src/blobtools/example/FXWY01/nematoda_odb9_busco.json
src/blobtools/lib/__init__.py
src/blobtools/lib/add.py
src/blobtools/lib/bed.py
src/blobtools/lib/blob_db.py
src/blobtools/lib/busco.py
src/blobtools/lib/calc.py
src/blobtools/lib/cov.py
src/blobtools/lib/dataset.py
src/blobtools/lib/fasta.py
src/blobtools/lib/fetch.py
src/blobtools/lib/field.py
src/blobtools/lib/file_io.py
src/blobtools/lib/filter.py
src/blobtools/lib/hits.py
src/blobtools/lib/host.py
src/blobtools/lib/key.py
src/blobtools/lib/link.py
src/blobtools/lib/remove.py
src/blobtools/lib/run_external.py
src/blobtools/lib/synonyms.py
src/blobtools/lib/taxdump.py
src/blobtools/lib/taxid.py
src/blobtools/lib/text.py
src/blobtools/lib/trnascan.py
src/blobtools/lib/validate.py
src/blobtools/lib/version.py
src/blobtools/lib/view.py
src/blobtools/schema/basic.schema.json
src/blobtools/schema/meta.schema.json
src/blobtools/schema/subschemas/array.data.schema.json
src/blobtools/schema/subschemas/array.meta.schema.json
src/blobtools/schema/subschemas/assembly.basic.schema.json
src/blobtools/schema/subschemas/assembly.schema.json
src/blobtools/schema/subschemas/category.data.schema.json
src/blobtools/schema/subschemas/category.meta.schema.json
src/blobtools/schema/subschemas/fields.schema.json
src/blobtools/schema/subschemas/identifier.data.schema.json
src/blobtools/schema/subschemas/identifier.meta.schema.json
src/blobtools/schema/subschemas/multiarray.data.schema.json
src/blobtools/schema/subschemas/multiarray.meta.schema.json
src/blobtools/schema/subschemas/plot.schema.json
src/blobtools/schema/subschemas/reads.schema.json
src/blobtools/schema/subschemas/taxon.basic.schema.json
src/blobtools/schema/subschemas/taxon.schema.json
src/blobtools/schema/subschemas/variable.data.schema.json
src/blobtools/schema/subschemas/variable.meta.schema.json
src/btk/__init__.py
src/btk/__main__.py
src/btk/btk.py
src/btk/lib/version.py
src/btk_pipeline/__init__.py
src/btk_pipeline/__main__.py
src/btk_pipeline/add_reads.smk
src/btk_pipeline/blastn.smk
src/btk_pipeline/blobtoolkit.smk
src/btk_pipeline/blobtools.smk
src/btk_pipeline/btk_pipeline.py
src/btk_pipeline/busco.smk
src/btk_pipeline/chunk_stats.smk
src/btk_pipeline/cov_stats.smk
src/btk_pipeline/diamond.smk
src/btk_pipeline/diamond_blastp.smk
src/btk_pipeline/minimap.smk
src/btk_pipeline/view.smk
src/btk_pipeline/window_stats.smk
src/btk_pipeline/windowmasker.smk
src/btk_pipeline/lib/__init__.py
src/btk_pipeline/lib/add_summary_to_metadata.py
src/btk_pipeline/lib/chunk_fasta.py
src/btk_pipeline/lib/count_busco_genes.py
src/btk_pipeline/lib/data.py
src/btk_pipeline/lib/extract_busco_genes.py
src/btk_pipeline/lib/functions.py
src/btk_pipeline/lib/generate_config.py
src/btk_pipeline/lib/generate_configs.sh
src/btk_pipeline/lib/generate_static_images.py
src/btk_pipeline/lib/lsf_wrapper.sh
src/btk_pipeline/lib/resume_pipeline.py
src/btk_pipeline/lib/run.py
src/btk_pipeline/lib/run_btk_pipeline.sh
src/btk_pipeline/lib/track_bioproject_accessions.py
src/btk_pipeline/lib/transfer_completed.py
src/btk_pipeline/lib/unchunk_blast.py
src/btk_pipeline/lib/version.py
src/btk_pipeline/lib/window_stats.py
src/btk_pipeline/rules/_transfer_dataset.smk
src/btk_pipeline/rules/add_cov_to_tsv.smk
src/btk_pipeline/rules/add_summary_to_metadata.smk
src/btk_pipeline/rules/checksum_files.smk
src/btk_pipeline/rules/chunk_fasta.smk
src/btk_pipeline/rules/chunk_fasta_by_busco.smk
src/btk_pipeline/rules/chunk_nohit_fasta.smk
src/btk_pipeline/rules/combine_stats.smk
src/btk_pipeline/rules/count_busco_genes.smk
src/btk_pipeline/rules/extract_busco_genes.smk
src/btk_pipeline/rules/extract_nohit_fasta.smk
src/btk_pipeline/rules/generate_images.smk
src/btk_pipeline/rules/generate_summary.smk
src/btk_pipeline/rules/get_chunked_stats.smk
src/btk_pipeline/rules/get_window_stats.smk
src/btk_pipeline/rules/run_bamtools_stats.smk
src/btk_pipeline/rules/run_blastn.smk
src/btk_pipeline/rules/run_blobtools_add.smk
src/btk_pipeline/rules/run_blobtools_create.smk
src/btk_pipeline/rules/run_busco5.smk
src/btk_pipeline/rules/run_diamond_blastp.smk
src/btk_pipeline/rules/run_diamond_blastx.smk
src/btk_pipeline/rules/run_minimap2_align.smk
src/btk_pipeline/rules/run_minimap2_index.smk
src/btk_pipeline/rules/run_mosdepth.smk
src/btk_pipeline/rules/run_sub_pipeline.smk
src/btk_pipeline/rules/run_windowmasker.smk
src/btk_pipeline/rules/unchunk_blastn.smk
src/btk_pipeline/rules/unchunk_blastx.smk
src/btk_pipeline/rules/unzip_assembly_fasta.smk
src/btk_pipeline/rules/validate_dataset.smk